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basiCO: A simplified python interface to COPASI
CoRC: the COPASI R Connector
Piecewise parameter fitting
| COPASI 4.0 (Build 18)
COPASI 4.0 (Build 18)
Version 4.0 (Build 18)
Release Date: June 16, 2006
Added task to calculate the
via the Wolf method.
scanning for MCA and Lyapunov exponent
hybrid simulation methods
for calculating a Time Course.
Added two new optimization methods
Evolutionary Strategies (SRES)
Redesign Optimization and Parameter Estimation widget
to enable creation and editing of multiple parameters and constraints while simultaneously displaying the information for more condensed.
objective function editor
has been greatly enhanced.
description of experimental data
for Parameter Estimation can now copied to other experiments within one data file.
The GUI now displays the
results of Parameter Estimation
, which also can be saved from there.
plotting of fitted values and errors
for Parameter Estimation.
logarithmically scaled plots
Added a list
last visited files
, which can be found under the file menu.
Implemented export of
Berkeley Madonna files
C source code
. This feature is also accessible from the command line.
The parameter overview allows now
changing of global parameters
rendering of kinetic functions and ODEs
. The later may also be saved in MathML.
SBML support for non-autonomous models
method parameters more human readable
plotting and reporting for Scan
slider window behaves more civilized
, it no longer stays on top.
warning and error message handling
has been fixed, i.e., no more spurious messages.
problem loading Gepasi file
including metabolites named "PI".
closing the application
hitting cancel in the save dialog prevents COPASI from exiting.
Fixed problem leaving the
GUI in a non functional state
when deleting the last compartment, metabolite, reaction, or plot.
Fixed import of
SBML containing NaN
in the MathML.
Fixed problem editing and displaying the
comment for the model
Fixed resizing behavior in
object selection widget
COPASI no longer refuses to do
Parameter Estimation of steady state experiments for non-autonomous models
, instead it issues a warning.
SBML export of files with substance unit set to items
crash in reaction widget
when a function variable was not correctly mapped.
reports are associated with the correct task
, for which they are intended.
crash in Parameter Estimation
when the experimental data description is incorrect. Instead appropriate messages are created indicating the exact problem.
The Optimization widget now contains the previously missing
update model check box