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basiCO: A simplified python interface to COPASI
CoRC: the COPASI R Connector
Piecewise parameter fitting
| COPASI 4.0.19 (development)
COPASI 4.0.19 (development)
Version 4.0.19 (development)
Release Date: October 6, 2006
Assignment and ODE rules
are now available for global quantities.
New optimization methods
Nelder & Mead
The user is now able to
control the weights
used in parameter estimation.
The user has now direct control of the
for parameter estimation and optimization.
Improved editing of mathematical expression avoids input errors.
The optimization and parameter estimation tasks display now a
count of adjustable parameters
Added a message box displaying problems which COPASI may have encountered when starting the GUI application.
interface of elementary flux modes
to allow scheduling of the task and printing of results including a total count of flux modes.
table display of functions
, which had line breaks in their mathematical expression.
Improved layout of
experimental data dialog
Fixed crash caused by committing an invalid expression for a function.
Fixed problem assigning kinetic function to reaction with
non integer stoichiometry
The display status (shown/hidden) of a curve in a plot is no preserved when a task is rerun.
Fixed crash when a product appeared as a parameter for the kinetic function in a irreversible reaction.
Fixed crash caused by sliders referring to no longer existing objects.
Fixed Madonna export of time parameter for explicitly time dependent models.
Improved check before deleting objects like compartments or metabolites to avoid crashes.
Fixed crashes related to viewing
, which have been obtained through task execution before the model has been changed.
Improved SBML import of function definitions.
international character support
in all filenames.
Fixed crash of stochastic simulation for empty models.