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User Manual | Model Creation | Parameter View

Parameter View

The parameter view widget can be displayed by selecting the leaf called Parameter Overview on the Model->Biochemical branch (see below). This widget allows you to view and edit all parameters of the model in one place. This saves you from moving around the model tree if you e.g. first have to edit the initial concentrations for some species and afterward parameters of one or more reactions. The view shows you the initial concentrations for the species at the top followed by the initial time and the volumes of all the compartments and at the bottom the kinetic parameters of all reactions.

In order to change a value, you double click on it which lets you input a new value. On hitting the return key or clicking somewhere else, the new value is not written to the object directly, but a '*' character appears in front of the name of the changed parameter. If you now leave this widget or press the Commit button at the bottom of the dialog, the new value is written to the corresponding object in the model.

Parameter View

The current parameterization can be serialized by clicking Save to File, where they can be exported to tabular formats (TSV / CSV), plain text, or the INI format (that can be used from the command line later on, see the command line reference).

The current parameterization can also be saved into a parameter set, which allows to apply it easily later on. For that simply select Store as Parameter Set.