These error messages can occur when reading COPASI files. Many of the error messages of the XML file reader are not serious. Since the COPASI file format has changed during development, current versions of COPASI might not recognize some elements used in older versions of the file format. And vice versa if you try to read a COPASI file generated with a version newer than the one you are currently using, the file might contain new elements unknown to the older version of COPASI. In the worst case some task settings might be lost.
Identifier
XML (1)
Message
Required attribute 'ATTRIBUTENAME' not found (line: 'LINENUMBER').
Description
The required attribute ATTRIBUTENAME is missing at line LINENUMBER. Please check the XML file.
Identifier
XML (2): XML error (line: 'LINENUMBER', column: 'POSITION')
Message
'MESSAGE'.
Description
Incorrect XML encountered at line LINENUMBER and character POSITION. The message gives further details about the error. This error is also shown when libsbml finds an error in an SBML file.
Identifier
XML (3)
Message
Unknown element 'ELEMENTNAME' encountered at line 'LINENUMBER'.
Description
The XML contained an unknown element ELEMENTNAME at line LINENUMBER. This element is ignored.
Identifier
XML (4)
Message
Unknown parameter 'PARAMETERNAME' encountered at line 'LINENUMBER'.
Description
The XML contained an unknown parameter PRAMETERNAME at line LINENUMBER. This parameter is ignored.
Identifier
XML (5)
Message
Unknown task type 'TASKTYPE' encountered at line 'LINENUMBER'.
Description
The XML contained an unknown task of type TASKTYPE at line LINENUMBER. This task is ignored.
Identifier
XML (6)
Message
Invalid function 'FUNCTIONNAME' encountered at line 'LINENUMBER'.
Description
The XML contains an invalid function FUNCTIONNAME at line LINENUMBER. This error should never occur, if it occurs with a file generated by COPASI, please send a bug report.
Identifier
XML (7)
Message
Unknown function 'FUNCTIONNAME' in reaction 'REACTIONNAME' encountered at line 'LINENUMBER'.
Description
The reaction REACTIONAME uses a call to an unknown function named FUNCTIONNAME in line LINENUMBER. Please check the XML file.
Identifier
XML (8)
Message
Unknown variable 'VARIABLENAME' in function 'FUNCTIONNAME' encountered at line 'LINENUMBER'. A possible reason is that the variable is a reserved string within the function description.
Description
Please check the file if a variable of the function FUNCTIONNAME at line LINENUMBER is a reserved keyword. For a list of reserved keywords see the section on
Identifier
XML (9)
Message
The file 'FILENAME' is written in a newer version 'COPASIVERSION' of the COPASI file format. This file might include features your version of COPASI does not support. To assure full compatibility please download the newest version at http://www.copasi.org.
Description
Self explanatory.
Identifier
XML (10)
Message
Invalid element '<ELEMENTNAME>' expecting '<ELEMENTNAME>' encountered at line 'LINENUMBER'.
Description
While reading a file, COPASI has encountered an element where it actually expected a different element.
Identifier
XML (11)
Message
Invalid closing element '<ELEMENTNAME>' expecting '<ELEMENTNAME>' encountered at line 'LINENUMBER'.
Description
While reading an XML file, COPASI encountered the end element tag for an element, but actually expected another element to end.
Identifier
XML (12)
Message
Order 'INDEX' out of range for variable 'VARIABLENAME' in function 'FUNCTIONNAME' encountered at line 'LINENUMBER'.
Description
!!!UNDOCUMENTED!!!
Identifier
XML (13)
Message
Unrecognized format in file 'FILENAME'.
Description
!!!UNDOCUMENTED!!!
Identifier
XML (14)
Message
Local reaction parameters may no longer be used in any expression in the model. The following automatic corrections have been applied: AUTOMATIC_CORRECTIONS Please note: Tasks, reports, and plots may have been affected by these changes and may no longer work as expected.
