Copy functionality for model entities (compartment, species, reactions, functions, etc.)
Improved child window management under the window menu entry.
Histograms are now displaying consistently scaled bars (% of total number of recorded values)
Fixed problem where MIRIAM hyperlinks where not correctly generated for some old style resource identifiers.
Simulation Engine
New optimization algorithm: Scatter Search
New MCA algorithm (Smallbone)
Continuation on simultaneous events
SED-ML
Implemented SED-ML support
Source package
CMake based build system
Bug Fixes since COPASI 4.11 (Build 65)
Graphical User Interface (CopasiUI)
COPASI now uses a decimal point even in countries where it is common to use a comma.
The results of optimization and parameter estimation display not the correct start values even if update model is selected.
The slider dialog shows now the currently active task and has been overall improved.
Reversible reaction in network diagrams are now displayed with 2 arrows.
Improved the C export of the ODEs and assignments.
Fixed crash occurring when the parameter estimation task was selected for models which had parameters defined acting on deleted experiments. Such models could only be created with 3rd party tools.
Fixed issues editing reactions parameters for models which have multiple compartments of which at least contained spaces in the name.
Improved display of expressions in the table widget for compartments, species, etc.
It is no longer possible to close the progress dialog by hitting the escape key which left the user interface in a disabled state.
Simulation Engine
Fixed a problem when simulating delayed events when the delayed execution coincided with an output time of the integration.
Fixed a crash which could occur at the end of a scan task when out put during sub task has been selected.
SBML
Annotation for kinetic laws is now preserved during an import/export cycle.
Export of the Avogadro constant has been implemented.
