CTimeSensLsodaMethod Member List

This is the complete list of members for CTimeSensLsodaMethod, including all inherited members.

__SIZE enum value	CDataObject
add(CDataObject *pObject, const bool &adopt=true)	CDataContainer	virtual
addGroup(const std::string &name)	CCopasiParameterGroup
addIssue(const CIssue &issue)	CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addParameter(const CCopasiParameter &parameter)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup	inline
addParameter(CCopasiParameter *pParameter)	CCopasiParameterGroup
addReference(const CDataContainer *pReference)	CDataObject
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
ALL enum value	CTimeSensLsodaMethod	protected
allocateValidValues(const Type &type, void *&pValidValues)	CCopasiParameter	static
allocateValue(const Type &type, void *&pValue)	CCopasiParameter	static
appendDeletedDependentData(CUndoData &undoData) const	CDataContainer	virtual
applyData(const CData &data, CUndoData::CChangeSet &changes)	CCopasiParameterGroup	virtual
Array enum value	CDataObject
assertGroup(const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup	inline
assignDefault(const void *pDefault)	CCopasiParameter	private
assignValidValues(const void *pValidValues)	CCopasiParameter	private
assignValue(const Type &type, void *&pValue, const void *pNewValue)	CCopasiParameter	static
assignValue(const void *pValue)	CCopasiParameter	private
beginIndex() const	CCopasiParameterGroup
beginName() const	CCopasiParameterGroup
calculate_dAssignments_dPar(CMatrix< C_FLOAT64 > &s)	CTimeSensMethod	protected
calculate_dAssignments_dState(CMatrix< C_FLOAT64 > &s, bool reduced)	CTimeSensMethod	protected
calculate_dInitialState_dPar(CMatrix< C_FLOAT64 > &s)	CTimeSensMethod	protected
calculate_dRate_dPar(CMatrix< C_FLOAT64 > &s, bool reduced)	CTimeSensMethod	protected
calculateValue() override	CDataObject	virtual
CCopasiMethod()	CCopasiMethod	private
CCopasiMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType)	CCopasiMethod	protected
CCopasiMethod(const CCopasiMethod &src)	CCopasiMethod	protected
CCopasiMethod(const CCopasiMethod &src, const CDataContainer *pParent)	CCopasiMethod
CCopasiParameter(const CCopasiParameter &src)	CCopasiParameter	protected
CCopasiParameter()	CCopasiParameter	private
CCopasiParameter(const CCopasiParameter &src, const CDataContainer *pParent)	CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter")	CCopasiParameter
CCopasiParameterGroup()	CCopasiParameterGroup	protected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)	CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")	CCopasiParameterGroup
CDataContainer()	CDataContainer	private
CDataContainer(const CDataContainer &src)	CDataContainer	protected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)	CDataContainer
CDataObject()	CDataObject	protected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataObject	protected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)	CDataObject
clear()	CCopasiParameterGroup
clearCallBack()	CCopasiMethod	virtual
CObjectInterface()	CObjectInterface
CObjectInterface(const CObjectInterface &src)	CObjectInterface
const_name_iterator typedef	CCopasiParameterGroup
Container enum value	CDataObject
ContainerList typedef	CObjectInterface
copySensitivitiesToResultMatrix()	CTimeSensLsodaMethod	virtual
createRootMask()	CTimeSensLsodaMethod	private
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const	CCopasiParameterGroup	virtual
createValue()	CCopasiParameter	private
CTimeSensLsodaMethod()	CTimeSensLsodaMethod	private
CTimeSensLsodaMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::deterministic, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)	CTimeSensLsodaMethod
CTimeSensLsodaMethod(const CTimeSensLsodaMethod &src, const CDataContainer *pParent)	CTimeSensLsodaMethod
CTimeSensMethod()	CTimeSensMethod	private
CTimeSensMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)	CTimeSensMethod
CTimeSensMethod(const CTimeSensMethod &src, const CDataContainer *pParent)	CTimeSensMethod
CUndoObjectInterface()	CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)	CUndoObjectInterface
DataModel enum value	CDataObject
DataObject(const CObjectInterface *pInterface)	CObjectInterface	static
DataObjectSet typedef	CDataObject
deleteValidValues(const Type &type, void *&pValidValues)	CCopasiParameter	static
deleteValue(const Type &type, void *&pValue)	CCopasiParameter	static
destroyRootMask()	CTimeSensLsodaMethod	protected
destruct() override	CDataObject	virtual
DISCRETE enum value	CTimeSensLsodaMethod	protected
DisplayName enum value	CDataObject
elements typedef	CCopasiParameterGroup
elevateChildren()	CTimeSensLsodaMethod	virtual
EmptyList	CDataContainer	static
endIndex() const	CCopasiParameterGroup
endName() const	CCopasiParameterGroup
eRootMasking enum name	CTimeSensLsodaMethod	protected
eUserInterfaceFlag enum name	CCopasiParameter
evalF(const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)	CTimeSensLsodaMethod	virtual
EvalF(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)	CTimeSensLsodaMethod	static
evalJ(const C_FLOAT64 *t, const C_FLOAT64 *y, const C_INT *ml, const C_INT *mu, C_FLOAT64 *pd, const C_INT *nRowPD)	CTimeSensLsodaMethod	virtual
EvalJ(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, const C_INT *ml, const C_INT *mu, C_FLOAT64 *pd, const C_INT *nRowPD)	CTimeSensLsodaMethod	static
evalR(const C_FLOAT64 *t, const C_FLOAT64 *y, const C_INT *nr, C_FLOAT64 *r)	CTimeSensLsodaMethod	virtual
EvalR(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, const C_INT *nr, C_FLOAT64 *r)	CTimeSensLsodaMethod	static
FAILURE enum value	CTimeSensMethod
Flag enum name	CDataObject
fromData(const CData &data, CUndoObjectInterface *pParent)	CCopasiParameter	static
generateUuid()	CUndoObjectInterface
getCallBack() const	CCopasiMethod
getChildObjectUnits(const CDataObject *pObject) const	CDataContainer	virtual
getCN() const override	CCopasiParameter	virtual
getDataObject() const override	CDataObject	virtual
getDefault() const	CCopasiParameter	inline
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const	CDataContainer
getElementTemplates()	CCopasiParameterGroup
getElementTemplates() const	CCopasiParameterGroup
getGroup(const std::string &name)	CCopasiParameterGroup
getGroup(const std::string &name) const	CCopasiParameterGroup
getGroup(const size_t &index)	CCopasiParameterGroup
getGroup(const size_t &index) const	CCopasiParameterGroup
getIndex(const CDataObject *pObject) const	CCopasiParameterGroup	virtual
getIndex(const std::string &name) const	CCopasiParameterGroup
getKey(const std::string &name) const	CCopasiParameterGroup
getKey(const size_t &index) const	CCopasiParameterGroup
CCopasiParameter::getKey() const override	CCopasiParameter	virtual
getMathContainer() const	CCopasiMethod
getName(const size_t &index) const	CCopasiParameterGroup	virtual
getObject(const CCommonName &cn) const	CCopasiParameterGroup	virtual
getObjectAncestor(const std::string &type) const	CDataObject
getObjectDataModel() const	CDataObject
getObjectDisplayName() const override	CCopasiParameter	virtual
getObjectFromCN(const CCommonName &cn) const	CDataObject
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)	CObjectInterface	static
getObjectName() const	CDataObject
getObjectParent() const	CDataObject
getObjects() const	CDataContainer	virtual
getObjects()	CDataContainer	virtual
getObjectType() const	CDataObject
getParameter(std::string name)	CCopasiParameterGroup
getParameter(std::string name) const	CCopasiParameterGroup
getParameter(const size_t &index)	CCopasiParameterGroup
getParameter(const size_t &index) const	CCopasiParameterGroup
getPrerequisites() const override	CDataObject	virtual
getRoots() const	CTimeSensMethod
getSubType() const	CCopasiMethod
getType() const	CCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) const	CCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) const	CCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) const	CCopasiParameterGroup
getUnits() const override	CDataContainer	virtual
getUserInterfaceFlag() const	CCopasiParameter
getUuid() const	CUndoObjectInterface
getValidity() const override	CDataObject	virtual
getValidValues() const	CCopasiParameter	inline
getValidValues()	CCopasiParameter	inline
getValidValuesPointer() const	CCopasiParameter
getValue(const std::string &name) const	CCopasiParameterGroup	inline
getValue(const std::string &name)	CCopasiParameterGroup	inline
getValue(const size_t &index) const	CCopasiParameterGroup	inline
getValue(const size_t &index)	CCopasiParameterGroup	inline
CCopasiParameter::getValue() const	CCopasiParameter	inline
CCopasiParameter::getValue()	CCopasiParameter	inline
getValueObject() const override	CDataContainer	virtual
getValuePointer() const override	CCopasiParameter	virtual
getValueReference() const	CCopasiParameter
Gui enum value	CDataObject
hasFlag(const Flag &flag) const	CDataObject
hasStateChanged(const CVectorCore< C_FLOAT64 > &startState) const	CTimeSensLsodaMethod	private
hasValidValues() const	CCopasiParameter
haveTemplate() const	CCopasiParameterGroup
index_iterator typedef	CCopasiParameterGroup
initializeDerivativesCalculations(bool reduced)	CTimeSensMethod
initializeParameter()	CTimeSensLsodaMethod	private
initObjects()	CDataContainer	protected
initResult()	CTimeSensMethod	virtual
insert(const CData &data)	CCopasiParameterGroup	virtual
integrateReducedModel() const	CTimeSensMethod
inValidValues(const CType &value) const	CCopasiParameter	inlineprivate
isBasic() const	CCopasiParameter
isDefault() const	CCopasiParameter
isEditable() const	CCopasiParameter
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override	CDataObject	virtual
isUnsupported() const	CCopasiParameter
isValidProblem(const CCopasiProblem *pProblem)	CTimeSensMethod	virtual
isValidValue(const C_FLOAT64 &value) const	CCopasiParameter
isValidValue(const C_INT32 &value) const	CCopasiParameter
isValidValue(const unsigned C_INT32 &value) const	CCopasiParameter
isValidValue(const bool &value) const	CCopasiParameter
isValidValue(const std::string &value) const	CCopasiParameter
isValidValue(const CCommonName &value) const	CCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) const	CCopasiParameter
isValidValue(const CType &) const	CCopasiParameter	inline
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)	CCopasiMethod	virtual
mAggregateValidity	CDataObject	private
maskRoots(CVectorCore< C_FLOAT64 > &rootValues)	CTimeSensLsodaMethod	private
mAssignmentJacobian	CTimeSensMethod	protected
mAssTargetValuePointers	CTimeSensMethod	protected
mAtol	CTimeSensLsodaMethod	private
Matrix enum value	CDataObject
mContainerState	CTimeSensMethod	protected
mdAssignment_dPar	CTimeSensMethod	protected
mData	CTimeSensLsodaMethod	protected
mDiscreteRoots	CTimeSensLsodaMethod	private
mdRate_dPar	CTimeSensMethod	protected
mDWork	CTimeSensLsodaMethod	private
mErrorMsg	CTimeSensLsodaMethod	private
mIWork	CTimeSensLsodaMethod	private
mJacobian	CTimeSensMethod	protected
mJType	CTimeSensLsodaMethod	private
mKey	CCopasiParameter	protected
mLastRootState	CTimeSensLsodaMethod	protected
mLastSuccessState	CTimeSensLsodaMethod	protected
mLSODA	CTimeSensLsodaMethod	private
mLSODAR	CTimeSensLsodaMethod	private
mLsodaStatus	CTimeSensLsodaMethod	protected
mNumAssTargets	CTimeSensMethod	protected
mNumParameters	CTimeSensMethod	protected
mNumRoots	CTimeSensLsodaMethod	private
mObjectDisplayName	CDataObject	mutableprivate
mObjectFlag	CDataObject	private
mObjectName	CDataObject	private
mObjects	CDataContainer	protected
mObjectType	CDataObject	private
ModelEntity enum value	CDataObject
mpAbsoluteTolerance	CTimeSensLsodaMethod	private
mParameterInitialValuePointers	CTimeSensMethod	protected
mParameterIsInitialConcentration	CTimeSensMethod	protected
mParameterTransientValuePointers	CTimeSensMethod	protected
mpContainer	CCopasiMethod	protected
mpContainerStateTime	CTimeSensMethod	protected
mpDefault	CCopasiParameter	protected
mPeekAheadMode	CTimeSensLsodaMethod	private
mpElementTemplates	CCopasiParameterGroup	private
mpMaxInternalSteps	CTimeSensLsodaMethod	private
mpMaxInternalStepSize	CTimeSensLsodaMethod	private
mpObjectDisplayName	CDataObject	mutableprivate
mpObjectName	CDataObject	mutableprivate
mpObjectParent	CDataObject	private
mpProblem	CTimeSensMethod	protected
mpReducedModel	CTimeSensMethod	protected
mpRelativeTolerance	CTimeSensLsodaMethod	private
mPrerequisits	CDataObject	protected
mProcessReport	CCopasiMethod	protected
mpTask	CTimeSensMethod	protected
mpUuid	CUndoObjectInterface	private
mpValidValues	CCopasiParameter	protected
mpValue	CCopasiParameter	protected
mpValueReference	CCopasiParameter	mutableprotected
mpYdot	CTimeSensLsodaMethod	private
mReferencedValidities	CDataObject	private
mReferences	CDataObject	protected
mRootCounter	CTimeSensLsodaMethod	private
mRootMask	CTimeSensLsodaMethod	private
mRootMasking	CTimeSensLsodaMethod	protected
mRootsFound	CTimeSensMethod	protected
mSavedState	CTimeSensLsodaMethod	private
mSeq1	CTimeSensMethod	protected
mSeq2	CTimeSensMethod	protected
mSeq3	CTimeSensMethod	protected
mSubType	CCopasiMethod	private
mSystemSize	CTimeSensMethod	protected
mTargetTime	CTimeSensLsodaMethod	private
mTask	CTimeSensLsodaMethod	private
mTaskType	CCopasiMethod	private
mTime	CTimeSensLsodaMethod	protected
mType	CCopasiParameter	private
mUserInterfaceFlag	CCopasiParameter	protected
mUuidLocked	CUndoObjectInterface	private
mValidity	CObjectInterface	mutableprotected
mVariables	CTimeSensLsodaMethod	private
name_iterator typedef	CCopasiParameterGroup
NameVector enum value	CDataObject
NONE enum value	CTimeSensLsodaMethod	protected
NonUniqueName enum value	CDataObject
NORMAL enum value	CTimeSensMethod
objectMap typedef	CDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)	CDataContainer
ObjectSet typedef	CObjectInterface
operator=(const CCopasiMethod &rhs)	CCopasiMethod
CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs)	CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)	CCopasiParameter
output(const bool &useMoieties)	CTimeSensMethod	protected
peekAhead()	CTimeSensLsodaMethod	private
prerequisitsContains(const DataObjectSet &objects) const	CDataObject
print(std::ostream *ostream) const	CCopasiMethod	virtual
printObjectSet(const std::string &s, const CObjectInterface::ObjectSet &os)	CTimeSensMethod	protectedstatic
printResult(std::ostream *ostream) const	CCopasiMethod	virtual
printUpdateSeq(const std::string &s, const CCore::CUpdateSequence &us)	CTimeSensMethod	protectedstatic
ReducedModel	CTimeSensMethod	protectedstatic
Reference enum value	CDataObject
refreshAggregateValidity()	CDataObject	private
remove(CDataObject *pObject)	CCopasiParameterGroup	virtual
removeIssue(const CIssue &issue)	CDataObject
removeParameter(const std::string &name)	CCopasiParameterGroup
removeParameter(const size_t &index)	CCopasiParameterGroup
removeParameter(CCopasiParameter *pParameter)	CCopasiParameterGroup
removeReference(const CDataContainer *pReference)	CDataObject
resetState(State &state)	CTimeSensLsodaMethod	private
ROOT enum value	CTimeSensMethod
Root enum value	CDataObject
sanitizeObjectName(std::string &name)	CDataObject	static
saveState(State &state, const CTimeSensMethod::Status &status) const	CTimeSensLsodaMethod	private
Separator enum value	CDataObject
setCallBack(CProcessReportLevel callBack)	CCopasiMethod	virtual
setDefault(const CType &defaultValue)	CCopasiParameter	inline
setDefault(const std::vector< CCopasiParameter * > &defaultValue)	CCopasiParameter
setMathContainer(CMathContainer *pContainer)	CCopasiMethod
setObjectName(const std::string &name)	CDataObject
setObjectParent(const CDataContainer *pParent) override	CCopasiParameter	virtual
setProblem(CTimeSensProblem *problem)	CTimeSensMethod
setRootMaskType(const eRootMasking &maskType)	CTimeSensLsodaMethod	private
setUserInterfaceFlag(const UserInterfaceFlag &flag)	CCopasiParameterGroup	virtual
setUuid(const xg::Guid &uuid)	CUndoObjectInterface
setUuid(const std::string &uuid)	CUndoObjectInterface
setValidValues(const std::vector< std::pair< CType, CType > > &validValues)	CCopasiParameter	inline
setValidValues(const CEnumAnnotation< CType, Enum > &validValues)	CCopasiParameter	inline
setValue(const std::string &name, const CType &value)	CCopasiParameterGroup	inline
setValue(const size_t &index, const CType &value)	CCopasiParameterGroup	inline
CCopasiParameter::setValue(const CType &value)	CCopasiParameter	inline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)	CCopasiParameter
signalMathContainerChanged()	CTimeSensMethod	protectedvirtual
size(const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const	CCopasiParameterGroup
start()	CTimeSensLsodaMethod	virtual
stateChange(const CMath::StateChange &change)	CTimeSensLsodaMethod	virtual
StaticString enum value	CDataObject
Status enum name	CTimeSensMethod
step(const double &deltaT, const bool &final=false)	CTimeSensLsodaMethod	virtual
swap(const size_t &iFrom, const size_t &iTo)	CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)	CCopasiParameterGroup
toData() const	CCopasiParameterGroup	virtual
Type enum name	CCopasiParameter
TypeName	CCopasiParameter	static
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)	CCopasiParameterGroup	virtual
UserInterfaceFlag typedef	CCopasiParameter
validityChanged(const CValidity &changedValidity) override	CDataObject	virtual
validityRemoved(const CValidity &changedValidity)	CDataObject
ValueBool enum value	CDataObject
ValueDbl enum value	CDataObject
ValueInt enum value	CDataObject
ValueInt64 enum value	CDataObject
ValueString enum value	CDataObject
Vector enum value	CDataObject
XMLType	CCopasiParameter	static
~CCopasiMethod()	CCopasiMethod	virtual
~CCopasiParameter()	CCopasiParameter	virtual
~CCopasiParameterGroup()	CCopasiParameterGroup	virtual
~CDataContainer()	CDataContainer	virtual
~CDataObject()	CDataObject	virtual
~CObjectInterface()	CObjectInterface	virtual
~CTimeSensLsodaMethod()	CTimeSensLsodaMethod
~CTimeSensMethod()	CTimeSensMethod
~CUndoObjectInterface()	CUndoObjectInterface	virtual