COPASI API  4.16.103
CLNAMethod Member List

This is the complete list of members for CLNAMethod, including all inherited members.

adaptiveSA enum valueCCopasiMethod
add(CCopasiObject *pObject, const bool &adopt=true)CCopasiContainervirtual
addDirectDependency(const CCopasiObject *pObject)CCopasiObject
addGroup(const std::string &name)CCopasiParameterGroup
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addParameter(const CCopasiParameter &parameter)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value)CCopasiParameterGroupinline
addParameter(CCopasiParameter *pParameter)CCopasiParameterGroup
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
allNeg enum valueCLNAMethod
Array enum valueCCopasiObjectprotected
assertGroup(const std::string &name)CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue)CCopasiParameterGroupinline
beginIndex() const CCopasiParameterGroup
beginName() const CCopasiParameterGroup
BOOL enum valueCCopasiParameter
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())CCopasiObjectstatic
calculateCovarianceMatrixFull()CLNAMethod
calculateCovarianceMatrixReduced()CLNAMethod
CalculateLNA()CLNAMethod
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)CCopasiContainer
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)CCopasiContainer
CCopasiMethod(const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL)CCopasiMethodprotected
CCopasiMethod(const CCopasiMethod &src, const CCopasiContainer *pParent=NULL)CCopasiMethod
CCopasiObject()CCopasiObjectprotected
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)CCopasiObjectprotected
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL)CCopasiObject
CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL)CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter")CCopasiParameter
CCopasiParameterGroup()CCopasiParameterGroupprotected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL)CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup")CCopasiParameterGroup
clear()CCopasiParameterGroup
clearDirectDependencies()CCopasiObject
clearRefresh()CCopasiObject
CLNAMethod(const CCopasiContainer *pParent=NULL)CLNAMethod
CLNAMethod(const CLNAMethod &src, const CCopasiContainer *pParent=NULL)CLNAMethod
CN enum valueCCopasiParameter
CObjectInterface()CObjectInterfaceinline
Container enum valueCCopasiObjectprotected
CoranaWalk enum valueCCopasiMethod
createMethod(CCopasiMethod::SubType subType=CCopasiMethod::linearNoiseApproximation)CLNAMethodstatic
crossSectionMethod enum valueCCopasiMethod
DataModel enum valueCCopasiObjectprotected
DataObjectSet typedefCCopasiObject
DataUpdateSequence typedefCCopasiObject
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const CCopasiObject
deterministic enum valueCCopasiMethod
DifferentialEvolution enum valueCCopasiMethod
directMethod enum valueCCopasiMethod
DOUBLE enum valueCCopasiParameter
DsaLsodar enum valueCCopasiMethod
EFMAlgorithm enum valueCCopasiMethod
EFMBitPatternAlgorithm enum valueCCopasiMethod
EFMBitPatternTreeAlgorithm enum valueCCopasiMethod
elevateChildren()CLNAMethodvirtual
EmptyListCCopasiContainerstatic
endIndex() const CCopasiParameterGroup
endName() const CCopasiParameterGroup
EvolutionaryProgram enum valueCCopasiMethod
EVStatus enum nameCLNAMethod
EXPRESSION enum valueCCopasiParameter
FILE enum valueCCopasiParameter
Flag enum nameCCopasiObjectprotected
GeneticAlgorithm enum valueCCopasiMethod
GeneticAlgorithmSR enum valueCCopasiMethod
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const CCopasiObject
getBMatrixReduced() const CLNAMethodinline
getBMatrixReducedAnn() const CLNAMethodinline
getChildObjectUnits(const CCopasiObject *pObject) const CCopasiContainervirtual
getCN() const CCopasiParametervirtual
getCovarianceMatrix() const CLNAMethodinline
getCovarianceMatrixAnn() const CLNAMethodinline
getCovarianceMatrixReduced() const CLNAMethodinline
getCovarianceMatrixReducedAnn() const CLNAMethodinline
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const CCopasiObjectvirtual
getEigenValueStatus() const CLNAMethodinline
getGroup(const std::string &name)CCopasiParameterGroup
getGroup(const std::string &name) const CCopasiParameterGroup
getGroup(const size_t &index)CCopasiParameterGroup
getGroup(const size_t &index) const CCopasiParameterGroup
getIndex(const std::string &name) const CCopasiParameterGroup
getKey(const std::string &name) const CCopasiParameterGroup
getKey(const size_t &index) const CCopasiParameterGroup
CCopasiParameter::getKey() const CCopasiParametervirtual
getModel() const CLNAMethod
getName(const size_t &index) const CCopasiParameterGroupvirtual
getObject(const CCopasiObjectName &cn) const CCopasiParameterGroupvirtual
getObjectAncestor(const std::string &type) const CCopasiObject
getObjectDataModel()CCopasiObject
getObjectDataModel() const CCopasiObject
getObjectDisplayName(bool regular=true, bool richtext=false) const CCopasiParametervirtual
getObjectName() const CCopasiObject
getObjectParent() const CCopasiObject
getObjects() const CCopasiContainervirtual
getObjectType() const CCopasiObject
getParameter(const std::string &name)CCopasiParameterGroup
getParameter(const std::string &name) const CCopasiParameterGroup
getParameter(const size_t &index)CCopasiParameterGroup
getParameter(const size_t &index) const CCopasiParameterGroup
getPrerequisites() const CCopasiObjectvirtual
getRefresh() const CCopasiObjectvirtual
getScaledBMatrixReducedAnn() const CLNAMethodinline
getScaledCovarianceMatrixAnn() const CLNAMethodinline
getScaledCovarianceMatrixReducedAnn() const CLNAMethodinline
getSteadyStateStatus() const CLNAMethodinline
getSubType() const CCopasiMethod
getType() const CCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) const CCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) const CCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) const CCopasiParameterGroup
getUnits() const CCopasiContainervirtual
getUnscaledBMatrixReducedAnn() const CLNAMethodinline
getUnscaledCovarianceMatrixAnn() const CLNAMethodinline
getUnscaledCovarianceMatrixReducedAnn() const CLNAMethodinline
getUpdateMethod() const CCopasiObject
getValue(const std::string &name) const CCopasiParameterGroup
getValue(const size_t &index) const CCopasiParameterGroup
getValue(const std::string &name)CCopasiParameterGroup
getValue(const size_t &index)CCopasiParameterGroup
CCopasiParameter::getValue() const CCopasiParameter
CCopasiParameter::getValue()CCopasiParameter
getValueObject() const CCopasiContainervirtual
getValuePointer() const CCopasiParametervirtual
getValueReference() const CCopasiParameter
GROUP enum valueCCopasiParameter
Gui enum valueCCopasiObjectprotected
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const CCopasiObject
hasUpdateMethod() const CCopasiObject
HookeJeeves enum valueCCopasiMethod
Householder enum valueCCopasiMethod
hybrid enum valueCCopasiMethod
HybridGASA enum valueCCopasiMethod
hybridLSODA enum valueCCopasiMethod
hybridODE45 enum valueCCopasiMethod
index_iterator typedefCCopasiParameterGroup
initializeParameter()CLNAMethodprivate
initObjects()CLNAMethodprivate
INT enum valueCCopasiParameter
INVALID enum valueCCopasiParameter
isArray() const CCopasiObject
isContainer() const CCopasiObject
isDataModel() const CCopasiObject
isMatrix() const CCopasiObject
isNameVector() const CCopasiObject
isNonUniqueName() const CCopasiObject
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const CCopasiObjectvirtual
isReference() const CCopasiObject
isRoot() const CCopasiObject
isSeparator() const CCopasiObject
isStaticString() const CCopasiObject
isValidProblem(const CCopasiProblem *pProblem)CLNAMethodvirtual
isValidValue(const C_FLOAT64 &value) const CCopasiParameter
isValidValue(const C_INT32 &value) const CCopasiParameter
isValidValue(const unsigned C_INT32 &value) const CCopasiParameter
isValidValue(const bool &value) const CCopasiParameter
isValidValue(const std::string &value) const CCopasiParameter
isValidValue(const CCopasiObjectName &value) const CCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) const CCopasiParameter
isValueBool() const CCopasiObject
isValueDbl() const CCopasiObject
isValueInt() const CCopasiObject
isValueInt64() const CCopasiObject
isValueString() const CCopasiObject
isVector() const CCopasiObject
KEY enum valueCCopasiParameter
LevenbergMarquardt enum valueCCopasiMethod
linearNoiseApproximation enum valueCCopasiMethod
load(CReadConfig &configBuffer)CLNAMethod
CCopasiMethod::load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)CCopasiMethodvirtual
LSODAR enum valueCCopasiMethod
lyapWolf enum valueCCopasiMethod
Matrix enum valueCCopasiObjectprotected
mBMatrixReducedCLNAMethodprivate
mBMatrixReducedAnnCLNAMethodprivate
mcaMethodReder enum valueCCopasiMethod
mCovarianceMatrixCLNAMethodprivate
mCovarianceMatrixAnnCLNAMethodprivate
mCovarianceMatrixReducedCLNAMethodprivate
mCovarianceMatrixReducedAnnCLNAMethodprivate
mEVStatusCLNAMethodprivate
mJacobianReducedCLNAMethodprivate
mKeyCCopasiParameterprotected
mLCLNAMethodprivate
mObjectsCCopasiContainerprotected
ModelEntity enum valueCCopasiObjectprotected
mpCallBackCCopasiMethodprotected
mpModelCLNAMethodprivate
mpValueReferenceCCopasiParametermutableprotected
mSizeCCopasiParameterprotected
mSSStatusCLNAMethodprivate
mSteadyStateResolutionCLNAMethodprivate
mustBeDeleted(const DataObjectSet &deletedObjects) const CCopasiObjectvirtual
mValueCCopasiParameterprotected
name_iterator typedefCCopasiParameterGroup
NameVector enum valueCCopasiObjectprotected
NelderMead enum valueCCopasiMethod
Newton enum valueCCopasiMethod
nonNegEigenvaluesExist enum valueCLNAMethod
NonUniqueName enum valueCCopasiObjectprotected
objectMap typedefCCopasiContainer
ObjectSet typedefCObjectInterface
operator=(const CCopasiParameterGroup &rhs)CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)CCopasiParameter
parameterGroup typedefCCopasiParameterGroup
ParticleSwarm enum valueCCopasiMethod
Praxis enum valueCCopasiMethod
print(std::ostream *ostream) const CCopasiMethodvirtual
printResult(std::ostream *ostream) const CCopasiMethodvirtual
process()CLNAMethodvirtual
RandomSearch enum valueCCopasiMethod
RandomSearchMaster enum valueCCopasiMethod
Reference enum valueCCopasiObjectprotected
remove(CCopasiObject *pObject)CCopasiContainervirtual
removeDirectDependency(const CCopasiObject *pObject)CCopasiObject
removeParameter(const std::string &name)CCopasiParameterGroup
removeParameter(const size_t &index)CCopasiParameterGroup
resizeAllMatrices()CLNAMethodvirtual
Root enum valueCCopasiObjectprotected
scanMethod enum valueCCopasiMethod
ScatterSearch enum valueCCopasiMethod
sensMethod enum valueCCopasiMethod
Separator enum valueCCopasiObjectprotected
setCallBack(CProcessReport *pCallBack)CCopasiMethodvirtual
setDirectDependencies(const DataObjectSet &directDependencies)CCopasiObject
setEigenValueStatus(CLNAMethod::EVStatus status)CLNAMethod
setModel(CModel *model)CLNAMethod
setObjectName(const std::string &name)CCopasiObject
setObjectParent(const CCopasiContainer *pParent)CCopasiObjectvirtual
setObjectValue(const C_FLOAT64 &value)CCopasiObject
setObjectValue(const C_INT32 &value)CCopasiObject
setObjectValue(const bool &value)CCopasiObject
setRefresh(CType *pType, void(CType::*method)(void))CCopasiObjectinline
setRenameHandler(CRenameHandler *rh)CCopasiObjectinlinestatic
setSteadyStateResolution(C_FLOAT64 factor)CLNAMethod
setSteadyStateStatus(CSteadyStateMethod::ReturnCode SSStatus)CLNAMethod
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const bool &))CCopasiObjectinline
setValue(const std::string &name, const CType &value)CCopasiParameterGroupinline
setValue(const size_t &index, const CType &value)CCopasiParameterGroupinline
CCopasiParameter::setValue(const CType &value)CCopasiParameterinline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)CCopasiParameter
SimulatedAnnealing enum valueCCopasiMethod
size() const CCopasiParameterGroup
smpRenameHandlerCCopasiObjectprotectedstatic
SRES enum valueCCopasiMethod
StaticString enum valueCCopasiObjectprotected
Statistics enum valueCCopasiMethod
SteepestDescent enum valueCCopasiMethod
stochastic enum valueCCopasiMethod
STRING enum valueCCopasiParameter
SubType enum nameCCopasiMethod
SubTypeNameCCopasiMethodstatic
swap(const size_t &iFrom, const size_t &iTo)CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)CCopasiParameterGroup
tauLeap enum valueCCopasiMethod
TruncatedNewton enum valueCCopasiMethod
tssCSP enum valueCCopasiMethod
tssILDM enum valueCCopasiMethod
tssILDMModified enum valueCCopasiMethod
Type enum nameCCopasiParameter
TypeNameCCopasiParameterstatic
UDOUBLE enum valueCCopasiParameter
UINT enum valueCCopasiParameter
unset enum valueCCopasiMethod
UpdateSequence typedefCObjectInterface
ValueBool enum valueCCopasiObjectprotected
ValueDbl enum valueCCopasiObjectprotected
ValueInt enum valueCCopasiObjectprotected
ValueInt64 enum valueCCopasiObjectprotected
ValueString enum valueCCopasiObjectprotected
Vector enum valueCCopasiObjectprotected
XMLSubTypeCCopasiMethodstatic
XMLTypeCCopasiParameterstatic
~CCopasiContainer()CCopasiContainervirtual
~CCopasiMethod()CCopasiMethodvirtual
~CCopasiObject()CCopasiObjectvirtual
~CCopasiParameter()CCopasiParametervirtual
~CCopasiParameterGroup()CCopasiParameterGroupvirtual
~CLNAMethod()CLNAMethodvirtual
~CObjectInterface()CObjectInterfaceinlinevirtual