COPASI API  4.16.103
CILDMMethod Member List

This is the complete list of members for CILDMMethod, including all inherited members.

adaptiveSA enum valueCCopasiMethod
add(CCopasiObject *pObject, const bool &adopt=true)CCopasiContainervirtual
addDirectDependency(const CCopasiObject *pObject)CCopasiObject
addGroup(const std::string &name)CCopasiParameterGroup
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addParameter(const CCopasiParameter &parameter)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value)CCopasiParameterGroupinline
addParameter(CCopasiParameter *pParameter)CCopasiParameterGroup
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
Array enum valueCCopasiObjectprotected
assertGroup(const std::string &name)CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue)CCopasiParameterGroupinline
beginIndex() const CCopasiParameterGroup
beginName() const CCopasiParameterGroup
BOOL enum valueCCopasiParameter
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())CCopasiObjectstatic
calculateDerivatives(C_FLOAT64 *X1, C_FLOAT64 *Y1)CTSSAMethodprotected
calculateDerivativesX(C_FLOAT64 *X1, C_FLOAT64 *Y1)CTSSAMethodprotected
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)CCopasiContainer
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)CCopasiContainer
CCopasiMethod(const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL)CCopasiMethodprotected
CCopasiMethod(const CCopasiMethod &src, const CCopasiContainer *pParent=NULL)CCopasiMethod
CCopasiObject()CCopasiObjectprotected
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)CCopasiObjectprotected
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL)CCopasiObject
CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL)CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter")CCopasiParameter
CCopasiParameterGroup()CCopasiParameterGroupprotected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL)CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup")CCopasiParameterGroup
CILDMMethod(const CCopasiContainer *pParent=NULL)CILDMMethodprivate
CILDMMethod(const CILDMMethod &src, const CCopasiContainer *pParent=NULL)CILDMMethod
clear()CCopasiParameterGroup
clearDirectDependencies()CCopasiObject
clearRefresh()CCopasiObject
CN enum valueCCopasiParameter
CObjectInterface()CObjectInterfaceinline
Container enum valueCCopasiObjectprotected
CoranaWalk enum valueCCopasiMethod
createAnnotationsM()CILDMMethod
createMethod(CCopasiMethod::SubType subType=CCopasiMethod::unset)CTSSAMethodstatic
crossSectionMethod enum valueCCopasiMethod
CTSSAMethod(const CCopasiMethod::SubType &subType, const CCopasiContainer *pParent=NULL)CTSSAMethodprotected
CTSSAMethod(const CTSSAMethod &src, const CCopasiContainer *pParent=NULL)CTSSAMethod
CTSSAMethod::createMethod(CCopasiMethod::SubType subType)CILDMMethodfriend
DataModel enum valueCCopasiObjectprotected
DataObjectSet typedefCCopasiObject
DataUpdateSequence typedefCCopasiObject
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const CCopasiObject
deterministic enum valueCCopasiMethod
deuflhard(C_INT &slow, C_INT &info)CILDMMethod
DifferentialEvolution enum valueCCopasiMethod
directMethod enum valueCCopasiMethod
DOUBLE enum valueCCopasiParameter
DsaLsodar enum valueCCopasiMethod
EFMAlgorithm enum valueCCopasiMethod
EFMBitPatternAlgorithm enum valueCCopasiMethod
EFMBitPatternTreeAlgorithm enum valueCCopasiMethod
elevateChildren()CTSSAMethodprotectedvirtual
EmptyListCCopasiContainerstatic
emptyVectors()CILDMMethod
endIndex() const CCopasiParameterGroup
endName() const CCopasiParameterGroup
EvalF(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)CTSSAMethodprotectedstatic
evalF(const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)CTSSAMethodprotected
EvolutionaryProgram enum valueCCopasiMethod
EXPRESSION enum valueCCopasiParameter
FILE enum valueCCopasiParameter
Flag enum nameCCopasiObjectprotected
GeneticAlgorithm enum valueCCopasiMethod
GeneticAlgorithmSR enum valueCCopasiMethod
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const CCopasiObject
getChildObjectUnits(const CCopasiObject *pObject) const CCopasiContainervirtual
getCN() const CCopasiParametervirtual
getCurrentStep() const CTSSAMethod
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const CCopasiObjectvirtual
getGroup(const std::string &name)CCopasiParameterGroup
getGroup(const std::string &name) const CCopasiParameterGroup
getGroup(const size_t &index)CCopasiParameterGroup
getGroup(const size_t &index) const CCopasiParameterGroup
getIndex(const std::string &name) const CCopasiParameterGroup
getKey(const std::string &name) const CCopasiParameterGroup
getKey(const size_t &index) const CCopasiParameterGroup
CCopasiParameter::getKey() const CCopasiParametervirtual
getName(const size_t &index) const CCopasiParameterGroupvirtual
getObject(const CCopasiObjectName &cn) const CCopasiParameterGroupvirtual
getObjectAncestor(const std::string &type) const CCopasiObject
getObjectDataModel()CCopasiObject
getObjectDataModel() const CCopasiObject
getObjectDisplayName(bool regular=true, bool richtext=false) const CCopasiParametervirtual
getObjectName() const CCopasiObject
getObjectParent() const CCopasiObject
getObjects() const CCopasiContainervirtual
getObjectType() const CCopasiObject
getParameter(const std::string &name)CCopasiParameterGroup
getParameter(const std::string &name) const CCopasiParameterGroup
getParameter(const size_t &index)CCopasiParameterGroup
getParameter(const size_t &index) const CCopasiParameterGroup
getPrerequisites() const CCopasiObjectvirtual
getReacSlowSpacePrintAnn() const CILDMMethodinline
getRefresh() const CCopasiObjectvirtual
getSubType() const CCopasiMethod
getTable(std::string name)CTSSAMethodinline
getTableName() const CTSSAMethodinline
getTMP1PrintAnn() const CILDMMethodinline
getTMP2PrintAnn() const CILDMMethodinline
getTMP3PrintAnn() const CILDMMethodinline
getType() const CCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) const CCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) const CCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) const CCopasiParameterGroup
getUnits() const CCopasiContainervirtual
getUpdateMethod() const CCopasiObject
getValue(const std::string &name) const CCopasiParameterGroup
getValue(const size_t &index) const CCopasiParameterGroup
getValue(const std::string &name)CCopasiParameterGroup
getValue(const size_t &index)CCopasiParameterGroup
CCopasiParameter::getValue() const CCopasiParameter
CCopasiParameter::getValue()CCopasiParameter
getValueObject() const CCopasiContainervirtual
getValuePointer() const CCopasiParametervirtual
getValueReference() const CCopasiParameter
getVec_TimeScale(int step)CTSSAMethod
getVfastSpacePrintAnn() const CILDMMethodinline
getVslowMetabPrintAnn() const CILDMMethodinline
getVslowPrintAnn() const CILDMMethodinline
getVslowSpacePrintAnn() const CILDMMethodinline
GROUP enum valueCCopasiParameter
Gui enum valueCCopasiObjectprotected
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const CCopasiObject
hasUpdateMethod() const CCopasiObject
HookeJeeves enum valueCCopasiMethod
Householder enum valueCCopasiMethod
hybrid enum valueCCopasiMethod
HybridGASA enum valueCCopasiMethod
hybridLSODA enum valueCCopasiMethod
hybridODE45 enum valueCCopasiMethod
index_iterator typedefCCopasiParameterGroup
initializeAtol()CTSSAMethodprotected
initializeIntegrationsParameter()CTSSAMethodprotected
initializeParameter()CILDMMethodvirtual
initObjects()CCopasiContainerprotected
INT enum valueCCopasiParameter
integrationMethodStart(const CState *initialState)CTSSAMethodprotected
integrationStep(const double &deltaT)CTSSAMethodprotected
INVALID enum valueCCopasiParameter
isArray() const CCopasiObject
isContainer() const CCopasiObject
isDataModel() const CCopasiObject
isMatrix() const CCopasiObject
isNameVector() const CCopasiObject
isNonUniqueName() const CCopasiObject
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const CCopasiObjectvirtual
isReference() const CCopasiObject
isRoot() const CCopasiObject
isSeparator() const CCopasiObject
isStaticString() const CCopasiObject
isValidProblem(const CCopasiProblem *pProblem)CTSSAMethodvirtual
isValidValue(const C_FLOAT64 &value) const CCopasiParameter
isValidValue(const C_INT32 &value) const CCopasiParameter
isValidValue(const unsigned C_INT32 &value) const CCopasiParameter
isValidValue(const bool &value) const CCopasiParameter
isValidValue(const std::string &value) const CCopasiParameter
isValidValue(const CCopasiObjectName &value) const CCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) const CCopasiParameter
isValueBool() const CCopasiObject
isValueDbl() const CCopasiObject
isValueInt() const CCopasiObject
isValueInt64() const CCopasiObject
isValueString() const CCopasiObject
isVector() const CCopasiObject
KEY enum valueCCopasiParameter
LevenbergMarquardt enum valueCCopasiMethod
linearNoiseApproximation enum valueCCopasiMethod
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)CCopasiMethodvirtual
LSODAR enum valueCCopasiMethod
lyapWolf enum valueCCopasiMethod
map_index(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim)CTSSAMethodprotected
map_index_desc(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim)CTSSAMethodprotected
mapTableToNameCTSSAMethod
mat_anal_fast_space(C_INT &slow)CTSSAMethodprotected
mat_anal_fast_space_thomas(C_INT &slow)CTSSAMethodprotected
mat_anal_metab(C_INT &slow)CTSSAMethodprotected
mat_anal_mod(C_INT &slow)CTSSAMethodprotected
mat_anal_mod_space(C_INT &slow)CTSSAMethodprotected
mAtolCTSSAMethodprotected
Matrix enum valueCCopasiObjectprotected
mcaMethodReder enum valueCCopasiMethod
mCfastCTSSAMethodprotected
mCurrentStepCTSSAMethodprotected
mCurrentTimeCTSSAMethodprotected
mDataCTSSAMethodprotected
mDtolCTSSAMethodprotected
mDWorkCTSSAMethodprotected
mEPSCTSSAMethodprotected
mErrorMsgCTSSAMethodprotected
mIWorkCTSSAMethodprotected
mJacobianCTSSAMethodprotected
mJacobian_initialCTSSAMethodprotected
mJTypeCTSSAMethodprotected
mKeyCCopasiParameterprotected
mLSODACTSSAMethodprotected
mLsodaStatusCTSSAMethodprotected
mObjectsCCopasiContainerprotected
ModelEntity enum valueCCopasiObjectprotected
mpCallBackCCopasiMethodprotected
mpCurrentStateCTSSAMethodprotected
mpModelCTSSAMethodprotected
mpProblemCTSSAMethodprotected
mpStateCTSSAMethodprotected
mpValueReferenceCCopasiParametermutableprotected
mQCTSSAMethodprotected
mQ_descCTSSAMethodprotected
mQzCTSSAMethodprotected
mRCTSSAMethodprotected
mR_descCTSSAMethodprotected
mReacSlowSpaceCILDMMethod
mReacSlowSpacePrintCILDMMethod
mReducedModelCTSSAMethodprotected
mRtolCTSSAMethodprotected
mSizeCCopasiParameterprotected
mSlowCTSSAMethodprotected
mStateCTSSAMethodprotected
mTdCTSSAMethodprotected
mTd_saveCTSSAMethodprotected
mTdInverseCTSSAMethodprotected
mTdInverse_saveCTSSAMethodprotected
mTimeCTSSAMethodprotected
mTMP1CILDMMethod
mTMP1PrintCILDMMethod
mTMP2CILDMMethod
mTMP2PrintCILDMMethod
mTMP3CILDMMethod
mTMP3PrintCILDMMethod
mustBeDeleted(const DataObjectSet &deletedObjects) const CCopasiObjectvirtual
mValueCCopasiParameterprotected
mVec_mReacSlowSpaceCILDMMethod
mVec_mTMP1CILDMMethod
mVec_mTMP2CILDMMethod
mVec_mTMP3CILDMMethod
mVec_mVfastSpaceCILDMMethod
mVec_mVslowCILDMMethod
mVec_mVslowMetabCILDMMethod
mVec_mVslowSpaceCILDMMethod
mVec_SlowModesCTSSAMethodprotected
mVec_TimeScaleCTSSAMethodprotected
mVfast_spaceCTSSAMethodprotected
mVfastSpacePrintCILDMMethod
mVslowCTSSAMethodprotected
mVslow_metabCTSSAMethodprotected
mVslow_spaceCTSSAMethodprotected
mVslowMetabPrintCILDMMethod
mVslowPrintCILDMMethod
mVslowSpacePrintCILDMMethod
mYCTSSAMethodprotected
mY_consCTSSAMethodprotected
mY_initialCTSSAMethodprotected
mYdotCTSSAMethodprotected
name_iterator typedefCCopasiParameterGroup
NameVector enum valueCCopasiObjectprotected
NelderMead enum valueCCopasiMethod
newton(C_FLOAT64 *ys, C_INT &slow, C_INT &info)CILDMMethod
Newton enum valueCCopasiMethod
NonUniqueName enum valueCCopasiObjectprotected
objectMap typedefCCopasiContainer
ObjectSet typedefCObjectInterface
operator=(const CCopasiParameterGroup &rhs)CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)CCopasiParameter
orthog(C_INT &number1, C_INT &number2)CTSSAMethodprotected
parameterGroup typedefCCopasiParameterGroup
ParticleSwarm enum valueCCopasiMethod
Praxis enum valueCCopasiMethod
pReacSlowSpacePrintAnnCILDMMethod
predifineAnnotation()CTSSAMethodvirtual
print(std::ostream *ostream) const CCopasiMethodvirtual
printResult(std::ostream *ostream) const CILDMMethodvirtual
pTmp1CILDMMethod
pTMP1CILDMMethod
pTMP1PrintAnnCILDMMethod
pTmp2CILDMMethod
pTMP2CILDMMethod
pTMP2PrintAnnCILDMMethod
pTMP3CILDMMethod
pTmp3CILDMMethod
pTMP3PrintAnnCILDMMethod
pTmp4CILDMMethod
pTmp5CILDMMethod
pVfastSpacePrintAnnCILDMMethod
pVslowMetabPrintAnnCILDMMethod
pVslowPrintAnnCILDMMethod
pVslowSpacePrintAnnCILDMMethod
RandomSearch enum valueCCopasiMethod
RandomSearchMaster enum valueCCopasiMethod
Reference enum valueCCopasiObjectprotected
remove(CCopasiObject *pObject)CCopasiContainervirtual
removeDirectDependency(const CCopasiObject *pObject)CCopasiObject
removeParameter(const std::string &name)CCopasiParameterGroup
removeParameter(const size_t &index)CCopasiParameterGroup
returnCurrentTime(int step)CTSSAMethod
Root enum valueCCopasiObjectprotected
scanMethod enum valueCCopasiMethod
ScatterSearch enum valueCCopasiMethod
schur(C_INT &info)CTSSAMethodprotected
schur_desc(C_INT &info)CTSSAMethodprotected
sensMethod enum valueCCopasiMethod
Separator enum valueCCopasiObjectprotected
setAnnotationM(size_t step)CILDMMethodvirtual
setCallBack(CProcessReport *pCallBack)CCopasiMethodvirtual
setCurrentState(CState *currentState)CTSSAMethod
setDirectDependencies(const DataObjectSet &directDependencies)CCopasiObject
setModel(CModel *model)CTSSAMethod
setObjectName(const std::string &name)CCopasiObject
setObjectParent(const CCopasiContainer *pParent)CCopasiObjectvirtual
setObjectValue(const C_FLOAT64 &value)CCopasiObject
setObjectValue(const C_INT32 &value)CCopasiObject
setObjectValue(const bool &value)CCopasiObject
setProblem(CTSSAProblem *problem)CTSSAMethod
setRefresh(CType *pType, void(CType::*method)(void))CCopasiObjectinline
setRenameHandler(CRenameHandler *rh)CCopasiObjectinlinestatic
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const bool &))CCopasiObjectinline
setValue(const std::string &name, const CType &value)CCopasiParameterGroupinline
setValue(const size_t &index, const CType &value)CCopasiParameterGroupinline
CCopasiParameter::setValue(const CType &value)CCopasiParameterinline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)CCopasiParameter
setVectors(int slowMode)CILDMMethod
SimulatedAnnealing enum valueCCopasiMethod
size() const CCopasiParameterGroup
smpRenameHandlerCCopasiObjectprotectedstatic
SRES enum valueCCopasiMethod
start(const CState *initialState)CILDMMethodvirtual
StaticString enum valueCCopasiObjectprotected
Statistics enum valueCCopasiMethod
SteepestDescent enum valueCCopasiMethod
step(const double &deltaT)CILDMMethodvirtual
stochastic enum valueCCopasiMethod
STRING enum valueCCopasiParameter
SubType enum nameCCopasiMethod
SubTypeNameCCopasiMethodstatic
swap(const size_t &iFrom, const size_t &iTo)CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)CCopasiParameterGroup
sylvester(C_INT slow, C_INT &info)CTSSAMethodprotected
tableNamesCTSSAMethod
tauLeap enum valueCCopasiMethod
transformation_norm(C_INT &slow, C_INT &info)CILDMMethod
TruncatedNewton enum valueCCopasiMethod
tssCSP enum valueCCopasiMethod
tssILDM enum valueCCopasiMethod
tssILDMModified enum valueCCopasiMethod
Type enum nameCCopasiParameter
TypeNameCCopasiParameterstatic
UDOUBLE enum valueCCopasiParameter
UINT enum valueCCopasiParameter
unset enum valueCCopasiMethod
update_nid(C_INT *index, C_INT *nid, const C_INT &dim)CTSSAMethodprotected
update_pid(C_INT *index, C_INT *pid, const C_INT &dim)CTSSAMethodprotected
UpdateSequence typedefCObjectInterface
ValueBool enum valueCCopasiObjectprotected
ValueDbl enum valueCCopasiObjectprotected
ValueInt enum valueCCopasiObjectprotected
ValueInt64 enum valueCCopasiObjectprotected
ValueString enum valueCCopasiObjectprotected
Vector enum valueCCopasiObjectprotected
XMLSubTypeCCopasiMethodstatic
XMLTypeCCopasiParameterstatic
~CCopasiContainer()CCopasiContainervirtual
~CCopasiMethod()CCopasiMethodvirtual
~CCopasiObject()CCopasiObjectvirtual
~CCopasiParameter()CCopasiParametervirtual
~CCopasiParameterGroup()CCopasiParameterGroupvirtual
~CILDMMethod()CILDMMethod
~CObjectInterface()CObjectInterfaceinlinevirtual
~CTSSAMethod()CTSSAMethod