adaptiveSA enum value | CCopasiMethod | |
add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addGroup(const std::string &name) | CCopasiParameterGroup | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addParameter(const CCopasiParameter ¶meter) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value) | CCopasiParameterGroup | inline |
addParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
Array enum value | CCopasiObject | protected |
assertGroup(const std::string &name) | CCopasiParameterGroup | |
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue) | CCopasiParameterGroup | inline |
basisRefinement(C_INT &N, C_INT &M, CMatrix< C_FLOAT64 > &ALA, CMatrix< C_FLOAT64 > &TAU, CMatrix< C_FLOAT64 > &A, CMatrix< C_FLOAT64 > &B, CMatrix< C_FLOAT64 > &A0, CMatrix< C_FLOAT64 > &B0) | CCSPMethod | |
beginIndex() const | CCopasiParameterGroup | |
beginName() const | CCopasiParameterGroup | |
BOOL enum value | CCopasiParameter | |
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
calculateDerivatives(C_FLOAT64 *X1, C_FLOAT64 *Y1) | CTSSAMethod | protected |
calculateDerivativesX(C_FLOAT64 *X1, C_FLOAT64 *Y1) | CTSSAMethod | protected |
calculateJacobian(C_INT &n, CVector< C_FLOAT64 > &y, CMatrix< C_FLOAT64 > &J) | CCSPMethod | |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiMethod(const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL) | CCopasiMethod | protected |
CCopasiMethod(const CCopasiMethod &src, const CCopasiContainer *pParent=NULL) | CCopasiMethod | |
CCopasiObject() | CCopasiObject | protected |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL) | CCopasiParameter | |
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter") | CCopasiParameter | |
CCopasiParameterGroup() | CCopasiParameterGroup | protected |
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL) | CCopasiParameterGroup | |
CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup") | CCopasiParameterGroup | |
CCSPMethod(const CCopasiContainer *pParent=NULL) | CCSPMethod | private |
CCSPMethod(const CCSPMethod &src, const CCopasiContainer *pParent=NULL) | CCSPMethod | |
clear() | CCopasiParameterGroup | |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
CN enum value | CCopasiParameter | |
CObjectInterface() | CObjectInterface | inline |
Container enum value | CCopasiObject | protected |
CoranaWalk enum value | CCopasiMethod | |
createAnnotationsM() | CCSPMethod | |
createMethod(CCopasiMethod::SubType subType=CCopasiMethod::unset) | CTSSAMethod | static |
crossSectionMethod enum value | CCopasiMethod | |
CSPImportanceIndex(C_INT &N, C_FLOAT64 &tauM1, CMatrix< C_FLOAT64 > &Q) | CCSPMethod | |
CSPOutput(C_INT &N, C_INT &M, C_INT &R) | CCSPMethod | |
CSPParticipationIndex(C_INT &N, C_INT &M, C_FLOAT64 &tauM1, CMatrix< C_FLOAT64 > &B0) | CCSPMethod | |
CSPradicalPointer(C_INT &N, C_INT &M, CMatrix< C_FLOAT64 > &A, CMatrix< C_FLOAT64 > &B) | CCSPMethod | |
cspstep(const double &deltaT, C_INT &n, C_INT &m, CMatrix< C_FLOAT64 > &A, CMatrix< C_FLOAT64 > &B) | CCSPMethod | |
CTSSAMethod(const CCopasiMethod::SubType &subType, const CCopasiContainer *pParent=NULL) | CTSSAMethod | protected |
CTSSAMethod(const CTSSAMethod &src, const CCopasiContainer *pParent=NULL) | CTSSAMethod | |
CTSSAMethod::createMethod(CCopasiMethod::SubType subType) | CCSPMethod | friend |
DataModel enum value | CCopasiObject | protected |
DataObjectSet typedef | CCopasiObject | |
DataUpdateSequence typedef | CCopasiObject | |
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
deterministic enum value | CCopasiMethod | |
DifferentialEvolution enum value | CCopasiMethod | |
directMethod enum value | CCopasiMethod | |
DOUBLE enum value | CCopasiParameter | |
DsaLsodar enum value | CCopasiMethod | |
EFMAlgorithm enum value | CCopasiMethod | |
EFMBitPatternAlgorithm enum value | CCopasiMethod | |
EFMBitPatternTreeAlgorithm enum value | CCopasiMethod | |
elevateChildren() | CTSSAMethod | protectedvirtual |
EmptyList | CCopasiContainer | static |
emptyOutputData(C_INT &N, C_INT &M, C_INT &R) | CCSPMethod | |
emptyVectors() | CCSPMethod | |
endIndex() const | CCopasiParameterGroup | |
endName() const | CCopasiParameterGroup | |
EvalF(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot) | CTSSAMethod | protectedstatic |
evalF(const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot) | CTSSAMethod | protected |
EvolutionaryProgram enum value | CCopasiMethod | |
EXPRESSION enum value | CCopasiParameter | |
FILE enum value | CCopasiParameter | |
findCandidatesNumber(C_INT &n, C_INT &k, CVector< C_FLOAT64 > &tsc, C_INT &info) | CCSPMethod | |
findTimeScaleSeparation(C_INT &n, C_INT &k, CVector< C_FLOAT64 > &tsc, C_INT &info) | CCSPMethod | |
Flag enum name | CCopasiObject | protected |
GeneticAlgorithm enum value | CCopasiMethod | |
GeneticAlgorithmSR enum value | CCopasiMethod | |
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
getAmplitudeAnn() const | CCSPMethod | inline |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
getCN() const | CCopasiParameter | virtual |
getCurrentStep() const | CTSSAMethod | |
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
getFastParticipationIndexAnn() const | CCSPMethod | inline |
getFastReactionPointerAnn() const | CCSPMethod | inline |
getFastReactionPointerNormedAnn() const | CCSPMethod | inline |
getGroup(const std::string &name) | CCopasiParameterGroup | |
getGroup(const std::string &name) const | CCopasiParameterGroup | |
getGroup(const size_t &index) | CCopasiParameterGroup | |
getGroup(const size_t &index) const | CCopasiParameterGroup | |
getImportanceIndexAnn() const | CCSPMethod | inline |
getImportanceIndexNormedRowAnn() const | CCSPMethod | inline |
getIndex(const std::string &name) const | CCopasiParameterGroup | |
getKey(const std::string &name) const | CCopasiParameterGroup | |
getKey(const size_t &index) const | CCopasiParameterGroup | |
CCopasiParameter::getKey() const | CCopasiParameter | virtual |
getName(const size_t &index) const | CCopasiParameterGroup | virtual |
getObject(const CCopasiObjectName &cn) const | CCopasiParameterGroup | virtual |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiParameter | virtual |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | virtual |
getObjectType() const | CCopasiObject | |
getParameter(const std::string &name) | CCopasiParameterGroup | |
getParameter(const std::string &name) const | CCopasiParameterGroup | |
getParameter(const size_t &index) | CCopasiParameterGroup | |
getParameter(const size_t &index) const | CCopasiParameterGroup | |
getParticipationIndexAnn() const | CCSPMethod | inline |
getParticipationIndexNormedColumnAnn() const | CCSPMethod | inline |
getParticipationIndexNormedRowAnn() const | CCSPMethod | inline |
getPrerequisites() const | CCopasiObject | virtual |
getRadicalPointerAnn() const | CCSPMethod | inline |
getRefresh() const | CCopasiObject | virtual |
getSlowParticipationIndexAnn() const | CCSPMethod | inline |
getSubType() const | CCopasiMethod | |
getTable(std::string name) | CTSSAMethod | inline |
getTableName() const | CTSSAMethod | inline |
getType() const | CCopasiMethod | |
CCopasiParameterGroup::getType(const std::string &name) const | CCopasiParameterGroup | |
CCopasiParameterGroup::getType(const size_t &index) const | CCopasiParameterGroup | |
getUniqueParameterName(const CCopasiParameter *pParameter) const | CCopasiParameterGroup | |
getUnits() const | CCopasiContainer | virtual |
getUpdateMethod() const | CCopasiObject | |
getValue(const std::string &name) const | CCopasiParameterGroup | |
getValue(const size_t &index) const | CCopasiParameterGroup | |
getValue(const std::string &name) | CCopasiParameterGroup | |
getValue(const size_t &index) | CCopasiParameterGroup | |
CCopasiParameter::getValue() const | CCopasiParameter | |
CCopasiParameter::getValue() | CCopasiParameter | |
getValueObject() const | CCopasiContainer | virtual |
getValuePointer() const | CCopasiParameter | virtual |
getValueReference() const | CCopasiParameter | |
getVec_TimeScale(int step) | CTSSAMethod | |
GROUP enum value | CCopasiParameter | |
Gui enum value | CCopasiObject | protected |
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
hasUpdateMethod() const | CCopasiObject | |
HookeJeeves enum value | CCopasiMethod | |
Householder enum value | CCopasiMethod | |
hybrid enum value | CCopasiMethod | |
HybridGASA enum value | CCopasiMethod | |
hybridLSODA enum value | CCopasiMethod | |
hybridODE45 enum value | CCopasiMethod | |
index_iterator typedef | CCopasiParameterGroup | |
initializeAtol() | CTSSAMethod | protected |
initializeIntegrationsParameter() | CTSSAMethod | protected |
initializeParameter() | CCSPMethod | virtual |
initObjects() | CCopasiContainer | protected |
INT enum value | CCopasiParameter | |
integrationMethodStart(const CState *initialState) | CTSSAMethod | protected |
integrationStep(const double &deltaT) | CTSSAMethod | protected |
INVALID enum value | CCopasiParameter | |
isArray() const | CCopasiObject | |
isBlockDiagonal(C_INT &N, C_INT &M, CMatrix< C_FLOAT64 > &ALA, C_FLOAT64 SMALL) | CCSPMethod | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isValidProblem(const CCopasiProblem *pProblem) | CTSSAMethod | virtual |
isValidValue(const C_FLOAT64 &value) const | CCopasiParameter | |
isValidValue(const C_INT32 &value) const | CCopasiParameter | |
isValidValue(const unsigned C_INT32 &value) const | CCopasiParameter | |
isValidValue(const bool &value) const | CCopasiParameter | |
isValidValue(const std::string &value) const | CCopasiParameter | |
isValidValue(const CCopasiObjectName &value) const | CCopasiParameter | |
isValidValue(const std::vector< CCopasiParameter * > &value) const | CCopasiParameter | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueInt64() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
KEY enum value | CCopasiParameter | |
LevenbergMarquardt enum value | CCopasiMethod | |
linearNoiseApproximation enum value | CCopasiMethod | |
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH) | CCopasiMethod | virtual |
LSODAR enum value | CCopasiMethod | |
lyapWolf enum value | CCopasiMethod | |
mAerror | CCSPMethod | |
mAmplitude | CCSPMethod | |
mAmplitudeTab | CCSPMethod | |
map_index(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim) | CTSSAMethod | protected |
map_index_desc(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim) | CTSSAMethod | protected |
mapTableToName | CTSSAMethod | |
mat_anal_fast_space(C_INT &slow) | CTSSAMethod | protected |
mat_anal_fast_space_thomas(C_INT &slow) | CTSSAMethod | protected |
mat_anal_metab(C_INT &slow) | CTSSAMethod | protected |
mat_anal_mod(C_INT &slow) | CTSSAMethod | protected |
mat_anal_mod_space(C_INT &slow) | CTSSAMethod | protected |
mAtol | CTSSAMethod | protected |
Matrix enum value | CCopasiObject | protected |
mB | CCSPMethod | |
mcaMethodReder enum value | CCopasiMethod | |
mCfast | CTSSAMethod | protected |
mCSPbasis | CCSPMethod | |
mCurrentStep | CTSSAMethod | protected |
mCurrentTime | CTSSAMethod | protected |
mData | CTSSAMethod | protected |
mDtol | CTSSAMethod | protected |
mDWork | CTSSAMethod | protected |
mEps | CCSPMethod | |
mEPS | CTSSAMethod | protected |
mErrorMsg | CTSSAMethod | protected |
mFastParticipationIndex | CCSPMethod | |
mFastParticipationIndexTab | CCSPMethod | |
mFastReactionPointer | CCSPMethod | |
mFastReactionPointerNormed | CCSPMethod | |
mFastReactionPointerNormedTab | CCSPMethod | |
mFastReactionPointerTab | CCSPMethod | |
mG | CCSPMethod | |
mI | CCSPMethod | |
mImportanceIndex | CCSPMethod | |
mImportanceIndexNormedRow | CCSPMethod | |
mImportanceIndexNormedRowTab | CCSPMethod | |
mImportanceIndexTab | CCSPMethod | |
mIter | CCSPMethod | |
mIWork | CTSSAMethod | protected |
mJacobian | CTSSAMethod | protected |
mJacobian_initial | CTSSAMethod | protected |
mJType | CTSSAMethod | protected |
mKey | CCopasiParameter | protected |
mLSODA | CTSSAMethod | protected |
mLsodaStatus | CTSSAMethod | protected |
mObjects | CCopasiContainer | protected |
ModelEntity enum value | CCopasiObject | protected |
modesAmplitude(C_INT &N, C_INT &M, CVector< C_FLOAT64 > &g, CMatrix< C_FLOAT64 > &B, CMatrix< C_FLOAT64 > &F) | CCSPMethod | |
modesAreExhausted(C_INT &N, C_INT &M, C_FLOAT64 &tauM, C_FLOAT64 &tauM1, CVector< C_FLOAT64 > &g, CMatrix< C_FLOAT64 > &A, CMatrix< C_FLOAT64 > &B, CMatrix< C_FLOAT64 > &F) | CCSPMethod | |
mParticipationIndex | CCSPMethod | |
mParticipationIndexNormedColumn | CCSPMethod | |
mParticipationIndexNormedColumnTab | CCSPMethod | |
mParticipationIndexNormedRow | CCSPMethod | |
mParticipationIndexNormedRowTab | CCSPMethod | |
mParticipationIndexTab | CCSPMethod | |
mpCallBack | CCopasiMethod | protected |
mpCurrentState | CTSSAMethod | protected |
mpModel | CTSSAMethod | protected |
mpProblem | CTSSAMethod | protected |
mpState | CTSSAMethod | protected |
mpValueReference | CCopasiParameter | mutableprotected |
mQ | CTSSAMethod | protected |
mQ_desc | CTSSAMethod | protected |
mQz | CTSSAMethod | protected |
mR | CTSSAMethod | protected |
mR_desc | CTSSAMethod | protected |
mRadicalPointer | CCSPMethod | |
mRadicalPointerTab | CCSPMethod | |
mReducedModel | CTSSAMethod | protected |
mRerror | CCSPMethod | |
mRtol | CTSSAMethod | protected |
mSetVectors | CCSPMethod | |
mSize | CCopasiParameter | protected |
mSlow | CTSSAMethod | protected |
mSlowParticipationIndex | CCSPMethod | |
mSlowParticipationIndexTab | CCSPMethod | |
mState | CTSSAMethod | protected |
mTd | CTSSAMethod | protected |
mTd_save | CTSSAMethod | protected |
mTdInverse | CTSSAMethod | protected |
mTdInverse_save | CTSSAMethod | protected |
mTime | CTSSAMethod | protected |
mTsc | CCSPMethod | |
mTStep | CCSPMethod | |
mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
mValue | CCopasiParameter | protected |
mVec_mAmplitude | CCSPMethod | |
mVec_mFastParticipationIndex | CCSPMethod | |
mVec_mFastReactionPointer | CCSPMethod | |
mVec_mFastReactionPointerNormed | CCSPMethod | |
mVec_mImportanceIndex | CCSPMethod | |
mVec_mImportanceIndexNormedRow | CCSPMethod | |
mVec_mParticipationIndex | CCSPMethod | |
mVec_mParticipationIndexNormedColumn | CCSPMethod | |
mVec_mParticipationIndexNormedRow | CCSPMethod | |
mVec_mRadicalPointer | CCSPMethod | |
mVec_mSlowParticipationIndex | CCSPMethod | |
mVec_SlowModes | CTSSAMethod | protected |
mVec_TimeScale | CTSSAMethod | protected |
mVfast_space | CTSSAMethod | protected |
mVslow | CTSSAMethod | protected |
mVslow_metab | CTSSAMethod | protected |
mVslow_space | CTSSAMethod | protected |
mY | CTSSAMethod | protected |
mY_cons | CTSSAMethod | protected |
mY_initial | CTSSAMethod | protected |
mYdot | CTSSAMethod | protected |
mYerror | CCSPMethod | |
name_iterator typedef | CCopasiParameterGroup | |
NameVector enum value | CCopasiObject | protected |
NelderMead enum value | CCopasiMethod | |
Newton enum value | CCopasiMethod | |
NonUniqueName enum value | CCopasiObject | protected |
objectMap typedef | CCopasiContainer | |
ObjectSet typedef | CObjectInterface | |
operator=(const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | |
CCopasiParameter::operator=(const CCopasiParameter &rhs) | CCopasiParameter | |
orthog(C_INT &number1, C_INT &number2) | CTSSAMethod | protected |
pAmplitudeAnn | CCSPMethod | |
parameterGroup typedef | CCopasiParameterGroup | |
ParticleSwarm enum value | CCopasiMethod | |
perturbateA(C_INT &n, CMatrix< C_FLOAT64 > &A, C_FLOAT64 delta) | CCSPMethod | |
pFastParticipationIndexAnn | CCSPMethod | |
pFastReactionPointerAnn | CCSPMethod | |
pFastReactionPointerNormedAnn | CCSPMethod | |
pImportanceIndexAnn | CCSPMethod | |
pImportanceIndexNormedRowAnn | CCSPMethod | |
pParticipationIndexAnn | CCSPMethod | |
pParticipationIndexNormedColumnAnn | CCSPMethod | |
pParticipationIndexNormedRowAnn | CCSPMethod | |
pRadicalPointerAnn | CCSPMethod | |
Praxis enum value | CCopasiMethod | |
predifineAnnotation() | CCSPMethod | virtual |
print(std::ostream *ostream) const | CCopasiMethod | virtual |
printResult(std::ostream *ostream) const | CCSPMethod | virtual |
pSlowParticipationIndexAnn | CCSPMethod | |
pTmp1 | CCSPMethod | |
pTmp2 | CCSPMethod | |
pTmp3 | CCSPMethod | |
pTmp3Normed | CCSPMethod | |
pTmp4 | CCSPMethod | |
pTmp4Fast | CCSPMethod | |
pTmp4NormedColumn | CCSPMethod | |
pTmp4NormedRow | CCSPMethod | |
pTmp4Slow | CCSPMethod | |
pTmp5 | CCSPMethod | |
pTmp5NormedRow | CCSPMethod | |
RandomSearch enum value | CCopasiMethod | |
RandomSearchMaster enum value | CCopasiMethod | |
Reference enum value | CCopasiObject | protected |
remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
removeParameter(const std::string &name) | CCopasiParameterGroup | |
removeParameter(const size_t &index) | CCopasiParameterGroup | |
returnCurrentTime(int step) | CTSSAMethod | |
Root enum value | CCopasiObject | protected |
scanMethod enum value | CCopasiMethod | |
ScatterSearch enum value | CCopasiMethod | |
schur(C_INT &info) | CTSSAMethod | protected |
schur_desc(C_INT &info) | CTSSAMethod | protected |
sensMethod enum value | CCopasiMethod | |
Separator enum value | CCopasiObject | protected |
setAnnotationM(size_t step) | CCSPMethod | virtual |
setCallBack(CProcessReport *pCallBack) | CCopasiMethod | virtual |
setCurrentState(CState *currentState) | CTSSAMethod | |
setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
setModel(CModel *model) | CTSSAMethod | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setProblem(CTSSAProblem *problem) | CTSSAMethod | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
setValue(const std::string &name, const CType &value) | CCopasiParameterGroup | inline |
setValue(const size_t &index, const CType &value) | CCopasiParameterGroup | inline |
CCopasiParameter::setValue(const CType &value) | CCopasiParameter | inline |
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value) | CCopasiParameter | |
setVectors(int fast) | CCSPMethod | |
setVectorsToNaN() | CCSPMethod | |
SimulatedAnnealing enum value | CCopasiMethod | |
size() const | CCopasiParameterGroup | |
smadd(CMatrix< C_FLOAT64 > &A, CMatrix< C_FLOAT64 > &B, CMatrix< C_FLOAT64 > &C, C_INT &n1, C_INT &n2) | CCSPMethod | |
sminverse(C_INT &n, CMatrix< C_FLOAT64 > &A, CMatrix< C_FLOAT64 > &B) | CCSPMethod | |
smmult(CMatrix< C_FLOAT64 > &A, CMatrix< C_FLOAT64 > &B, CMatrix< C_FLOAT64 > &C, C_INT &n1, C_INT &n2, C_INT &n3) | CCSPMethod | |
smnorm(C_INT &n, CMatrix< C_FLOAT64 > &A, CMatrix< C_FLOAT64 > &B, C_INT &n1) | CCSPMethod | |
smpRenameHandler | CCopasiObject | protectedstatic |
smsubst(CMatrix< C_FLOAT64 > &A, CMatrix< C_FLOAT64 > &B, CMatrix< C_FLOAT64 > &C, C_INT &n1, C_INT &n2) | CCSPMethod | |
SRES enum value | CCopasiMethod | |
start(const CState *initialState) | CCSPMethod | virtual |
StaticString enum value | CCopasiObject | protected |
Statistics enum value | CCopasiMethod | |
SteepestDescent enum value | CCopasiMethod | |
step(const double &deltaT) | CCSPMethod | virtual |
stochastic enum value | CCopasiMethod | |
STRING enum value | CCopasiParameter | |
SubType enum name | CCopasiMethod | |
SubTypeName | CCopasiMethod | static |
swap(const size_t &iFrom, const size_t &iTo) | CCopasiParameterGroup | |
swap(index_iterator &from, index_iterator &to) | CCopasiParameterGroup | |
sylvester(C_INT slow, C_INT &info) | CTSSAMethod | protected |
tableNames | CTSSAMethod | |
tauLeap enum value | CCopasiMethod | |
TruncatedNewton enum value | CCopasiMethod | |
tssCSP enum value | CCopasiMethod | |
tssILDM enum value | CCopasiMethod | |
tssILDMModified enum value | CCopasiMethod | |
Type enum name | CCopasiParameter | |
TypeName | CCopasiParameter | static |
UDOUBLE enum value | CCopasiParameter | |
UINT enum value | CCopasiParameter | |
unset enum value | CCopasiMethod | |
update_nid(C_INT *index, C_INT *nid, const C_INT &dim) | CTSSAMethod | protected |
update_pid(C_INT *index, C_INT *pid, const C_INT &dim) | CTSSAMethod | protected |
UpdateSequence typedef | CObjectInterface | |
ValueBool enum value | CCopasiObject | protected |
ValueDbl enum value | CCopasiObject | protected |
ValueInt enum value | CCopasiObject | protected |
ValueInt64 enum value | CCopasiObject | protected |
ValueString enum value | CCopasiObject | protected |
Vector enum value | CCopasiObject | protected |
XMLSubType | CCopasiMethod | static |
XMLType | CCopasiParameter | static |
yCorrection(C_INT &N, C_INT &M, CVector< C_FLOAT64 > &y, CMatrix< C_FLOAT64 > &TAUM, CMatrix< C_FLOAT64 > &F, CMatrix< C_FLOAT64 > &A) | CCSPMethod | |
~CCopasiContainer() | CCopasiContainer | virtual |
~CCopasiMethod() | CCopasiMethod | virtual |
~CCopasiObject() | CCopasiObject | virtual |
~CCopasiParameter() | CCopasiParameter | virtual |
~CCopasiParameterGroup() | CCopasiParameterGroup | virtual |
~CCSPMethod() | CCSPMethod | |
~CObjectInterface() | CObjectInterface | inlinevirtual |
~CTSSAMethod() | CTSSAMethod | |