CReaction is COPASIs internal reaction representation. Many of the error messages in this class are related to SBML import/export.
Identifier
CReaction (1)
Message
Function 'FUNCTIONNAME' not found.
Description
INTERNAL. A reaction tries to use a function as a kinetic law that is unknown.
Identifier
CReaction (2)
Message
In Reaction 'REACTIONNAME' the compartment could not be guessed.
Description
!!!UNDOCUMENTED!!!
Identifier
CReaction (3)
Message
Reaction 'REACTIONNAME' has no substrates and no products.
Description
COPASI found a reaction with neither substrates nor products. A reaction needs to have at least one substrate or one product.
Identifier
CReaction (4)
Message
Only Species, Compartments or Parameter object nodes are allowed in kinetic functions.
Description
In kinetic functions, only references to compartments, species and/or parameters are allowed. For explicit time dependent models, time can also be referenced from a kinetic function. If this error message occurs, COPASI has found a reference that is neither a reference to a compartment, a species, a parameter or the time.
Identifier
CReaction (5)
Message
Nodes of type 'TYPENAME' are not implemented yet.
Description
INTERNAL
Identifier
CReaction (6)
Message
Nodes of type VARIABLE must not appear in an expression.
Description
INTERNAL
Identifier
CReaction (7)
Message
Species object 'OBJECTNAME' is neither substrate, product nor modifier to reaction 'REACTIONNAME' but it is used in the kinetic law.
Description
During SBML import COPASI found a name in a kinetic law that is neither a parameter, a substrate, product or modifier to the reaction. The most likely cause for this that a modifier has not been declared in the listOfModifiers of the reaction.
Identifier
CReaction (8)
Message
Could not find variable with name 'VARIABLENAME'.
Description
INTERNAL
Identifier
CReaction (9)
Message
Could not find object for key 'KEY'.
Description
INTERNAL
Identifier
CReaction (10)
Message
Parameter 'PARAMETER' is a vector.
Description
INTERNAL
Identifier
CReaction (11)
Message
Reaction 'REACTIONNAME' refers to unusable Function 'FUNCTIONNAME'.
