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Change History | COPASI 4.12 (Build 81)

COPASI 4.12 (Build 81)

Version 4.12.81

Release Date: Apr. 18, 2014

New Features since COPASI 4.11 (Build 65)

  • Graphical User Interface (CopasiUI)
    • Model Parameter Sets
    • Import and Export of Kinetic Function databases.
    • Improved Network Diagrams
    • Copy functionality for model entities (compartment, species, reactions, functions, etc.)
    • Improved child window management under the window menu entry.
    • Histograms are now displaying consistently scaled bars (% of total number of recorded values)
    • Fixed problem where MIRIAM hyperlinks where not correctly generated for some old style resource identifiers.
  • Simulation Engine
    • New optimization algorithm: Scatter Search
    • New MCA algorithm (Smallbone)
    • Continuation on simultaneous events
  • SED-ML
    • Implemented SED-ML support
  • Source package
    • CMake based build system

Bug Fixes since COPASI 4.11 (Build 65)

  • Graphical User Interface (CopasiUI)
    • COPASI now uses a decimal point even in countries where it is common to use a comma.
    • The results of optimization and parameter estimation display not the correct start values even if update model is selected.
    • The slider dialog shows now the currently active task and has been overall improved.
    • Reversible reaction in network diagrams are now displayed with 2 arrows.
    • Improved the C export of the ODEs and assignments.
    • Fixed crash occurring when the parameter estimation task was selected for models which had parameters defined acting on deleted experiments. Such models could only be created with 3rd party tools.
    • Fixed issues editing reactions parameters for models which have multiple compartments of which at least contained spaces in the name.
    • Improved display of expressions in the table widget for compartments, species, etc.
    • It is no longer possible to close the progress dialog by hitting the escape key which left the user interface in a disabled state.
  • Simulation Engine
    • Fixed a problem when simulating delayed events when the delayed execution coincided with an output time of the integration.
    • Fixed a crash which could occur at the end of a scan task when out put during sub task has been selected.
  • SBML
    • Annotation for kinetic laws is now preserved during an import/export cycle.
    • Export of the Avogadro constant has been implemented.