COPASI's Use In Toxicology


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Hendrickx DM, Souza T, Jennen DG, Kleinjans JC (2016) DTNI: a novel toxicogenomics data analysis tool for identifying the molecular mechanisms underlying the adverse effects of toxic compounds. Archives of Toxicology 1–10 Toxicology Link

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Amemiya T, Honma M, Kariya Y, Ghosh S, Kitano H, Kurachi Y, Fujita K, Sasaki Y, Homma Y, Abernethy DR, Kume H, Suzuki H (2015) Elucidation of the molecular mechanisms underlying adverse reactions associated with a kinase inhibitor using systems toxicology. npj Systems Biology and Applications 1:15005 Toxicology Signaling Link
Gladkovskaya O, Greaney P, Gun'ko YK, O'Connor GM, Meere M, Rochev Y (2015) An experimental and theoretical assessment of quantum dot cytotoxicity. Toxicol. Res. 4:1409-15 Toxicology Link
Tóth A, Brózik A, Szakács G, Sarkadi B, Hegedüs T (2015) A Novel Mathematical Model Describing Adaptive Cellular Drug Metabolism and Toxicity in the Chemoimmune System. PLoS ONE 10:e0115533 Toxicology Link

3 publications
Talemi SR, Jacobson T, Garla V, Navarrete C, Wagner A, Tamás MJ, Schaber J (2014) Mathematical modelling of arsenic transport, distribution and detoxification processes in yeast. Molecular microbiology 92:1343–1356 Toxicology Metabolism Link

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Geenen S, du Preez FB, Snoep JL, Foster AJ, Sarda S, Kenna JG, Wilson ID, Westerhoff HV (2013) Glutathione metabolism modeling: a mechanism for liver drug-robustness and a new biomarker strategy. Biochim. Biophys. Acta 1830:4943- 59 Toxicology Metabolism Link
van't Erve TJ (2013) Discoveries on the storage of red blood cells and the exposure of cells in culture to xenobiotics. D.Phil. Thesis, The University of Iowa Toxicology Link

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Chen X (2011) Glutathione suppresses the autoxidation of 2’,5’-dihydroxy-4-chlorobiphenyl. MS Thesis, University of Iowa. Toxicology Link

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Shi Y, Varghese SM, Huang S, White J, Pervaiz S, Tucker-Kellogg L (2009) Computational modeling of pathway dynamics for detecting drug effects: paradoxical effects of LYS303511 on TRAIL-induced apoptosis. Proc LSS Comput Syst Bioinform Conf, 213–224 Toxicology Link

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