COPASI's Use In Chemistry

Stasiw DE, Mandal M, Neisen BD, Mitchell LA, Cramer CJ, Tolman WB (2017) Why So Slow? Mechanistic Insights from Studies of a Poor Catalyst for Polymerization of ε-Caprolactone. Inorganic Chemistry 56:725–728 Chemistry Link

Burés J (2016) A Simple Graphical Method to Determine the Order in Catalyst. Angew. Chem. Int. Ed. Engl. 55:2028-31 Chemistry Link
Laviska DA, Zhou T, Kumar A, Emge TJ, Krogh-Jespersen K, Goldman AS (2016) Single and Double C–H Activation of Biphenyl or Phenanthrene. An Example of C–H Addition to Ir(III) More Facile than Addition to Ir(I). Organometallics 35:1613–1623 Chemistry Link
Levin MD, Kaphan DM, Hong CM, Bergman RG, Raymond KN, Toste FD (2016) Scope and Mechanism of Cooperativity at the Intersection of Organometallic and Supramolecular Catalysis. Journal of the American Chemical Society 138:9682–9693 Enzymology Chemistry Link
Özkar S, Finke RG (2016) Palladium(0) Nanoparticle Formation, Stabilization, and Mechanistic Studies: Pd(acac) 2 as a Preferred Precursor, [Bu 4 N] 2 HPO 4 Stabilizer, plus the Stoichiometry, Kinetics, and Minimal, Four-Step Mechanism of the Palladium Nanoparticle Formation and Subsequent Agglomeration Reactions. Langmuir 32:3699–3716 Chemistry Link
Semenov SN, Kraft LJ, Ainla A, Zhao M, Baghbanzadeh M, Campbell VE, Kang K, Fox JM, Whitesides GM (2016) Autocatalytic, bistable, oscillatory networks of biologically relevant organic reactions. Nature 537:656–660 Chemistry Biochemistry Link
Sung S, Sale D, Braddock DC, Armstrong A, Brennan C, Davies RP (2016) Mechanistic Studies on the Copper-Catalyzed N-Arylation of Alkylamines Promoted by Organic Soluble Ionic Bases. ACS Catalysis 6:3965–74 Chemistry Link
Tootoonchi MH, Sharma G, Calles J, Prabhakar R, Kaifer AE (2016) Cooperative Self-Assembly of a Quaternary Complex Formed by Two Cucurbit [7] uril Hosts, Cyclobis (paraquat-p-phenylene), and a “Designer” Guest. Angewandte Chemie 128:11679–83 Chemistry Link
Wei D, Roisnel T, Darcel C, Clot E, Sortais J-B (2016) Hydrogenation of Carbonyl Derivatives with a Well-Defined Rhenium Precatalyst. ChemCatChem 9:80–83 Chemistry Link
Xu H, Diccianni JB, Katigbak J, Hu C, Zhang Y, Diao T (2016) Bimetallic C–C Bond-Forming Reductive Elimination from Nickel. Journal of the American Chemical Society 138:4779–4786 Chemistry Link

Aullón G, Crespo M, Font-Bardia M, Jover J, Martínez M, Pike J (2015) A combined kinetico-mechanistic and computational study on the competitive formation of seven- versus five-membered platinacycles; the relevance of spectator halide ligands. Dalton Trans. 44:17968-79 Chemistry Link
Compel WS, Wong OA, Chen X, Yi C, Geiss R, Häkkinen H, Knappenberger KL Jr, Ackerson CJ (2015) Dynamic Diglyme-Mediated Self-Assembly of Gold Nanoclusters. ACS Nano. 9:11690-8. Chemistry Link
della Sala F, Kay ER (2015) Reversible Control of Nanoparticle Functionalization and Physicochemical Properties by Dynamic Covalent Exchange. Angew. Chem. 127:4261-5 Chemistry Link
Hristova-Neeley D, Neshchadin D, Gescheidt G (2015) Time-Resolved EPR as a Tool to Investigate Oxygen Quenching in Photoinitiated Radical Polymerizations. J. Phys. Chem. B, 119:13883-7 Chemistry Link
Jeong H, John JM, Schrock RR, Hoveyda AH (2015) Synthesis of Alternating trans-AB Copolymers through Ring-Opening Metathesis Polymerization Initiated by Molybdenum Alkylidenes. J. Am. Chem. Soc. 137:2239-42 Chemistry Link
Ji Y, Benkovics T, Beutner GL, Sfouggatakis C, Eastgate MD, Blackmond DG (2015) Mechanistic Insights into the Vanadium-Catalyzed Achmatowicz Rearrangement of Furfurol. J. Organic Chem. 80:1696-1702 Chemistry Link
Laurell Nash A, Hertzberg R, Wen YQ, Dahlgren B, Brinck T, Moberg C (2015) Dual Lewis Acid-Lewis Base Catalyzed Acylcyanation of Aldehydes: A Mechanistic Study. Chemistry doi:10.1002/chem.201503782 Chemistry Link
Luo J, Theron R, Sewell LJ, Hooper TN, Weller AS, Oliver AG, McIndoe JS (2015) Rhodium-Catalyzed Selective Partial Hydrogenation of Alkynes. Organometallics 34:3021-8 Chemistry Link
Nelsen ER, Brezny AC, Landis CR (2015) Interception and Characterization of Catalyst Species in Rhodium Bis(diazaphospholane)-Catalyzed Hydroformylation of Octene, Vinyl Acetate, Allyl Cyanide, and 1-Phenyl-1,3-butadiene. J. Am. Chem. Soc., 2015, 137:14208-219 Chemistry Link
Patschinski P (2015) Chemoselective Silylation of Alcohols Through Lewis Base-catalyzed Reactions. Experimental and Theoretical Studies. PhD Thesis, Ludwig-Maximilians University of Munich Chemistry Link
Torbensen K, Rossi F, Pantani OL, Ristori S, Abou-Hassan A (2015) Interaction of the Belousov-Zhabotinsky Reaction with Phospholipid Engineered Membranes. J. Phys. Chem. B 119:10224-30 Chemistry Link

Carrasco D, Pérez-Temprano MH, Casares JA, Espinet P (2014) Cross Alkyl-Aryl versus Homo Aryl-Aryl Coupling in Palladium-Catalyzed Coupling of Alkyl-Gold (I) and Aryl-Halide. Organometallics 33:3540-3545 Chemistry Link
Claudino M, Jonsson M, Johansson M (2014) Utilizing thiol-ene coupling kinetics in the design of renewable thermoset resins based on D-limonene and polyfunctional thiols. Royal Soc. Chem. Advances 4:10317-10329 Chemistry Link
Kefalidis CE, Davi M, Holstein PM, Clot E, Baudoin O (2014) Mechanistic Study of the Selectivity of Olefin versus Cyclobutene Formation by Palladium (0)-Catalyzed Intramolecular C (sp3)-H Activation. J. Organic Chem. 79:11903-11910 Chemistry Link
Kent PD, Mondloch JE, Finke RG (2014) A Four-Step Mechanism for the Formation of Supported-Nanoparticle Heterogenous Catalysts in Contact with Solution: The Conversion of Ir (1, 5-COD) Cl/gamma-Al2O3 to Ir (0) 170/gamma-Al2O3. J Am. Chem. Soc. 136:1930-41 Chemistry Link
Miller AJM, Kaminsky W, Goldberg KI (2014) Arene Activation at Iridium Facilitates C-O Bond Cleavage of Aryl Ethers. Organometallics 33:1245-1252 Chemistry Link
Valero González G (2014) Estudis mecanístics i metodològics de processos d'autocatàlisi i organocatàlisi asimètriques. Ph.D. Thesis, Department of Organic Chemistry, University of Barcelona Chemistry Link
Vickers JW, Sumliner JM, Lv H, Morris M, Geletii YV, Hill CL (2014) Collecting meaningful early-time kinetic data in homogeneous catalytic water oxidation with a sacrificial oxidant. Phys. Chem. Chemical Physics 16:11942-11949 Chemistry Link

Diao T, Pun D, Stahl SS (2013) Aerobic Dehydrogenation of Cyclohexanone to Cyclohexenone Catalyzed by Pd(DMSO)2(TFA)2: Evidence for Ligand-Controlled Chemoselectivity. J. Am. Chem. Soc. 135:8205-8212 Chemistry Link
Khan HA (2013) Asymmetric Synthesis of Lactones and Lactams: Rhodium Catalysis in the Hydroacylation of Ketones and the Hydrogenation of Cyclic Dehydropeptides. Ph.D. Thesis, Department of Chemistry, University of Toronto Chemistry Link
Lv H, Rudd JA, Zhuk PF, Lee JY, Constable EC, Housecroft CE, Hill CL, Musaev DG, Geletii YV (2013) Bis (4'-(4-pyridyl)-2,2':6',2''-terpyridine)ruthenium (ii) complexes and their N-alkylated derivatives in catalytic light-driven water oxidation. Royal Soc. Chem. Advances 3:20647-20654 Chemistry Link
Reeves BD, Hilmer JK, Mellmann L, Hartzheim M, Poffenberger K, Johnson K, Joshi N, Singel DJ, Grieco PA (2013) Selective trapping of SNO-BSA and GSNO by benzenesulfinic acid sodium salt: mechanistic study of thiosulfonate formation and feasibility as a protein S-nitrosothiol detection strategy. Tetrahedron Lett. 54:5707-10 Chemistry Link
Scheller S, Goenrich M, Thauer RK, Jaun B (2013) Methyl-coenzyme M reductase from methanogenic archaea: isotope effects on label exchange and ethane formation with the homologous substrate ethyl-coenzyme M. J. Am. Chem. Soc 135:14985-14995 Chemistry Enzymology Link
Sundin S, Dahlgren B, Roth O, Jonsson M (2013) H2O2 and radiation induced dissolution of UO2 and SIMFUEL in deficient aqueous solution. J. Nuclear Materials 443:291-297 Chemistry Link

Biswas S, Huang Z, Choliy Y, Wang DY, Brookhart M, Krogh-Jespersen K, Goldman AS (2012) Olefin Isomerization by Iridium Pincer Catalysts. Experimental Evidence for an η 3 -Allyl Pathway and an Unconventional Mechanism Predicted by DFT Calculations. Journal of the American Chemical Society 134:13276-13295 Chemistry Link
Burés J, Armstrong A, Blackmond DG (2012) Curtin-Hammett Paradigm for Stereocontrol in Organocatalysis by Diarylprolinol Ether Catalysts. Journal of the American Chemical Society 134:6741-6750 Chemistry Link
Criquet J, Allard S, Salhi E, Joll CA, Heitz A, von Gunten U (2012) Iodate and Iodo-Trihalomethane Formation during Chlorination of Iodide-Containing Waters: Role of Bromide. Environmental Science & Technology 46:7350-7357 Chemistry Link
Ding K, Miranda MO, Moscato-Goodpaster B, Ajellal N, Breyfogle LE, Hermes ED, Schaller CP, Roe SE, Cramer CJ, Hillmyer MA, Tolman WB (2012) Roles of Monomer Binding and Alkoxide Nucleophilicity in Aluminum-Catalyzed Polymerization of ε - Caprolactone. Macromolecules 45:5387-5396 Chemistry Link
Friedrich LC, Mendes MA, Silva VO, Zanta CLPS, Machulek Jr. A, Quina FH (2012) Mechanistic implications of zinc(II) ions on the degradation of phenol by the fenton reaction. Journal of the Brazilian Chemical Society 23:1372-1377 Chemistry Link
Lindner, Christoph (2012) Phosphane in der Organokatalyse: experimentelle und theoretische Studien. PhD Thesis, Ludwig-Maximilians University Munich. Chemistry Link
Micheau J-C, Coudret C, Cruz J-M, Buhse T (2012) Amplification of enantiomeric excess, mirror-image symmetry breaking and kinetic proofreading in Soai reaction models with different oligomeric orders. Physical Chemistry Chemical Physics 14:13239 Chemistry Link
Monge ME, Rosenorn T, Favez O, Muller M, Adler G, Abo Riziq A, Rudich Y, Herrmann H, George C, D’Anna B (2012) Alternative pathway for atmospheric particles growth. Proceedings of the National Academy of Sciences 109:6840-6844 Chemistry Link
Moscato BM, Zhu B, Landis CR (2012) Mechanistic Investigations into the Behavior of a Labeled Zirconocene Polymerization Catalyst. Organometallics 31:2097-2107 Chemistry Link
Muntean N, Thuy LB, Kály-Kullai K, Wittmann M, Noszticzius Z, Onel L, Furrow SD (2012) Measurement of Hypoiodous Acid Concentration by a Novel Type Iodide Selective Electrode and a New Method To Prepare HOI. Monitoring HOI Levels in the Briggs-Rauscher Oscillatory Reaction. The Journal of Physical Chemistry A 116:6630-6642 Chemistry Link

Diao T, Stahl SS (2011) Synthesis of Cyclic Enones via Direct Palladium-Catalyzed Aerobic Dehydrogenation of Ketones. Journal of the American Chemical Society , 133:14566–9 Chemistry Link
Izawa Y, Pun D, Stahl SS (2011) Palladium-Catalyzed Aerobic Dehydrogenation of Substituted Cyclohexanones to Phenols. Science 333:209-213 Chemistry Link
Johnson KRD, Hayes PG (2011) Kinetic and Mechanistic Investigation of Metallacycle Ring Opening in an Ortho-Metalated Lutetium Aryl Complex. Organometallics 30:58–67 Chemistry Link
Keitz BK, Grubbs RH (2011) Probing the origin of degenerate metathesis selectivity via characterization and dynamics of ruthenacyclobutanes containing variable NHCs. J. Am. Chem. Soc. 133:16277-16284 Chemistry Link

Andreani A, Burnelli S, Granaiola M, Leoni A, Locatelli A, Morigi R, Rambaldi M, Varoli L, Cremonini MA, Placucci G (2010) New isatin derivatives with antioxidant activity. European Journal of Medicinal Chemistry 45:1374–1378 Chemistry Link
Orrillo AG, Furlan RLE (2010) Supramolecular Interactions between Library Members Modulate the Behavior of Dynamic Combinatorial Libraries. The Journal of Organic Chemistry 75:211–214 Chemistry Link
Zhang Y, Song D, Lanni LM, Shimizu KD (2010) Importance of Functional Monomer Dimerization in the Molecular Imprinting Process. Macromolecules 43:6284–6294 Chemistry Link

Blaquiere N, Shore DG, Rousseaux S, Fagnou K (2009) Decarboxylative Ketone Aldol Reactions: Development and Mechanistic Evaluation under Metal-Free Conditions. The Journal of Organic Chemistry 74:6190–6198 Chemistry Link
Shen Z, Dornan PK, Khan HA, WooTK, Dong VM (2009) Mechanistic Insights into the Rhodium-Catalyzed Intramolecular Ketone Hydroacylation (2009) J. Am. Chem. Soc. 131:1077-91 Chemistry Link