COPASI API  4.40.278
CTrajectoryMethodDsaLsodar Member List

This is the complete list of members for CTrajectoryMethodDsaLsodar, including all inherited members.

__SIZE enum valueCDataObject
add(CDataObject *pObject, const bool &adopt=true)CDataContainervirtual
addGroup(const std::string &name)CCopasiParameterGroup
addIssue(const CIssue &issue)CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addParameter(const CCopasiParameter &parameter)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroupinline
addParameter(CCopasiParameter *pParameter)CCopasiParameterGroup
addReference(const CDataContainer *pReference)CDataObject
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
ALL enum valueCLsodaMethodprotected
allocateValidValues(const Type &type, void *&pValidValues)CCopasiParameterstatic
allocateValue(const Type &type, void *&pValue)CCopasiParameterstatic
appendDeletedDependentData(CUndoData &undoData) constCDataContainervirtual
applyData(const CData &data, CUndoData::CChangeSet &changes)CCopasiParameterGroupvirtual
Array enum valueCDataObject
assertGroup(const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroupinline
assignDefault(const void *pDefault)CCopasiParameterprivate
assignValidValues(const void *pValidValues)CCopasiParameterprivate
assignValue(const Type &type, void *&pValue, const void *pNewValue)CCopasiParameterstatic
assignValue(const void *pValue)CCopasiParameterprivate
beginIndex() constCCopasiParameterGroup
beginName() constCCopasiParameterGroup
calculatePropensities()CTrajectoryMethodDsaLsodar
calculateTotalPropensity()CTrajectoryMethodDsaLsodar
calculateValue() overrideCDataObjectvirtual
CCopasiMethod()CCopasiMethodprivate
CCopasiMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType)CCopasiMethodprotected
CCopasiMethod(const CCopasiMethod &src)CCopasiMethodprotected
CCopasiMethod(const CCopasiMethod &src, const CDataContainer *pParent)CCopasiMethod
CCopasiParameter(const CCopasiParameter &src)CCopasiParameterprotected
CCopasiParameter()CCopasiParameterprivate
CCopasiParameter(const CCopasiParameter &src, const CDataContainer *pParent)CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter")CCopasiParameter
CCopasiParameterGroup()CCopasiParameterGroupprotected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")CCopasiParameterGroup
CDataContainer()CDataContainerprivate
CDataContainer(const CDataContainer &src)CDataContainerprotected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)CDataContainer
CDataObject()CDataObjectprotected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataObjectprotected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)CDataObject
cleanup()CTrajectoryMethodDsaLsodar
clear()CCopasiParameterGroup
clearCallBack()CCopasiMethodvirtual
CLsodaMethod()CLsodaMethodprivate
CLsodaMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::deterministic, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)CLsodaMethod
CLsodaMethod(const CLsodaMethod &src, const CDataContainer *pParent)CLsodaMethod
CObjectInterface()CObjectInterface
CObjectInterface(const CObjectInterface &src)CObjectInterface
const_name_iterator typedefCCopasiParameterGroup
Container enum valueCDataObject
ContainerList typedefCObjectInterface
createRootMask()CLsodaMethodprivate
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) constCCopasiParameterGroupvirtual
createValue()CCopasiParameterprivate
CTrajectoryMethod()CTrajectoryMethodprivate
CTrajectoryMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)CTrajectoryMethod
CTrajectoryMethod(const CTrajectoryMethod &src, const CDataContainer *pParent)CTrajectoryMethod
CTrajectoryMethodDsaLsodar()CTrajectoryMethodDsaLsodarprivate
CTrajectoryMethodDsaLsodar(const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::DsaLsodar, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)CTrajectoryMethodDsaLsodar
CTrajectoryMethodDsaLsodar(const CTrajectoryMethodDsaLsodar &src, const CDataContainer *pParent)CTrajectoryMethodDsaLsodar
CUndoObjectInterface()CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)CUndoObjectInterface
DataModel enum valueCDataObject
DataObject(const CObjectInterface *pInterface)CObjectInterfacestatic
DataObjectSet typedefCDataObject
deleteValidValues(const Type &type, void *&pValidValues)CCopasiParameterstatic
deleteValue(const Type &type, void *&pValue)CCopasiParameterstatic
destroyRootMask()CLsodaMethodprotected
destruct() overrideCDataObjectvirtual
DISCRETE enum valueCLsodaMethodprotected
DisplayName enum valueCDataObject
doSingleStep(C_FLOAT64 currentTime, C_FLOAT64 endTime)CTrajectoryMethodDsaLsodarvirtual
elements typedefCCopasiParameterGroup
elevateChildren()CTrajectoryMethodDsaLsodarvirtual
EmptyListCDataContainerstatic
endIndex() constCCopasiParameterGroup
endName() constCCopasiParameterGroup
eRootMasking enum nameCLsodaMethodprotected
eUserInterfaceFlag enum nameCCopasiParameter
evalF(const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)CTrajectoryMethodDsaLsodarvirtual
EvalF(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)CLsodaMethodstatic
EvalJ(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, const C_INT *ml, const C_INT *mu, C_FLOAT64 *pd, const C_INT *nRowPD)CLsodaMethodstatic
evalJ(const C_FLOAT64 *t, const C_FLOAT64 *y, const C_INT *ml, const C_INT *mu, C_FLOAT64 *pd, const C_INT *nRowPD)CLsodaMethodvirtual
evalR(const C_FLOAT64 *t, const C_FLOAT64 *y, const C_INT *nr, C_FLOAT64 *r)CTrajectoryMethodDsaLsodarvirtual
EvalR(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, const C_INT *nr, C_FLOAT64 *r)CLsodaMethodstatic
FAILURE enum valueCTrajectoryMethod
fireReaction(const size_t &index)CTrajectoryMethodDsaLsodar
Flag enum nameCDataObject
fromData(const CData &data, CUndoObjectInterface *pParent)CCopasiParameterstatic
generateUuid()CUndoObjectInterface
getCallBack() constCCopasiMethod
getChildObjectUnits(const CDataObject *pObject) constCDataContainervirtual
getCN() const overrideCCopasiParametervirtual
getDataObject() const overrideCDataObjectvirtual
getDefault() constCCopasiParameterinline
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) constCDataContainer
getElementTemplates()CCopasiParameterGroup
getElementTemplates() constCCopasiParameterGroup
getGroup(const std::string &name)CCopasiParameterGroup
getGroup(const std::string &name) constCCopasiParameterGroup
getGroup(const size_t &index)CCopasiParameterGroup
getGroup(const size_t &index) constCCopasiParameterGroup
getIndex(const CDataObject *pObject) constCCopasiParameterGroupvirtual
getIndex(const std::string &name) constCCopasiParameterGroup
getKey(const std::string &name) constCCopasiParameterGroup
getKey(const size_t &index) constCCopasiParameterGroup
CCopasiParameter::getKey() const overrideCCopasiParametervirtual
getMathContainer() constCCopasiMethod
getName(const size_t &index) constCCopasiParameterGroupvirtual
getObject(const CCommonName &cn) constCCopasiParameterGroupvirtual
getObjectAncestor(const std::string &type) constCDataObject
getObjectDataModel() constCDataObject
getObjectDisplayName() const overrideCCopasiParametervirtual
getObjectFromCN(const CCommonName &cn) constCDataObject
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)CObjectInterfacestatic
getObjectName() constCDataObject
getObjectParent() constCDataObject
getObjects() constCDataContainervirtual
getObjects()CDataContainervirtual
getObjectType() constCDataObject
getParameter(std::string name)CCopasiParameterGroup
getParameter(std::string name) constCCopasiParameterGroup
getParameter(const size_t &index)CCopasiParameterGroup
getParameter(const size_t &index) constCCopasiParameterGroup
getPrerequisites() const overrideCDataObjectvirtual
getRoots() constCTrajectoryMethod
getSubType() constCCopasiMethod
getType() constCCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) constCCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) constCCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) constCCopasiParameterGroup
getUnits() const overrideCDataContainervirtual
getUserInterfaceFlag() constCCopasiParameter
getUuid() constCUndoObjectInterface
getValidity() const overrideCDataObjectvirtual
getValidValues() constCCopasiParameterinline
getValidValues()CCopasiParameterinline
getValidValuesPointer() constCCopasiParameter
getValue(const std::string &name) constCCopasiParameterGroupinline
getValue(const std::string &name)CCopasiParameterGroupinline
getValue(const size_t &index) constCCopasiParameterGroupinline
getValue(const size_t &index)CCopasiParameterGroupinline
CCopasiParameter::getValue() constCCopasiParameterinline
CCopasiParameter::getValue()CCopasiParameterinline
getValueObject() const overrideCDataContainervirtual
getValuePointer() const overrideCCopasiParametervirtual
getValueReference() constCCopasiParameter
Gui enum valueCDataObject
hasFlag(const Flag &flag) constCDataObject
hasStateChanged(const CVectorCore< C_FLOAT64 > &startState) constCLsodaMethodprivate
hasValidValues() constCCopasiParameter
haveTemplate() constCCopasiParameterGroup
index_iterator typedefCCopasiParameterGroup
initializeParameter()CTrajectoryMethodDsaLsodarprivate
initObjects()CDataContainerprotected
insert(const CData &data)CCopasiParameterGroupvirtual
integrateDeterministicPart(const C_FLOAT64 &deltaT)CTrajectoryMethodDsaLsodar
integrateReducedModel() constCTrajectoryMethod
inValidValues(const CType &value) constCCopasiParameterinlineprivate
isBasic() constCCopasiParameter
isDefault() constCCopasiParameter
isEditable() constCCopasiParameter
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const overrideCDataObjectvirtual
isUnsupported() constCCopasiParameter
isValidProblem(const CCopasiProblem *pProblem)CTrajectoryMethodDsaLsodarvirtual
isValidValue(const C_FLOAT64 &value) constCCopasiParameter
isValidValue(const C_INT32 &value) constCCopasiParameter
isValidValue(const unsigned C_INT32 &value) constCCopasiParameter
isValidValue(const bool &value) constCCopasiParameter
isValidValue(const std::string &value) constCCopasiParameter
isValidValue(const CCommonName &value) constCCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) constCCopasiParameter
isValidValue(const CType &) constCCopasiParameterinline
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)CCopasiMethodvirtual
mA0CTrajectoryMethodDsaLsodarprotected
mAggregateValidityCDataObjectprivate
mAmuCTrajectoryMethodDsaLsodarprotected
maskRoots(CVectorCore< C_FLOAT64 > &rootValues)CLsodaMethodprivate
mAtolCLsodaMethodprivate
Matrix enum valueCDataObject
mContainerStateCTrajectoryMethodprotected
mDataCLsodaMethodprotected
mDiscreteRootsCLsodaMethodprivate
mDWorkCLsodaMethodprivate
mErrorMsgCLsodaMethodprivate
mFirstReactionSpeciesIndexCTrajectoryMethodDsaLsodarprotected
mIWorkCLsodaMethodprivate
mJTypeCLsodaMethodprivate
mKeyCCopasiParameterprotected
mLastRootStateCLsodaMethodprotected
mLastSuccessStateCLsodaMethodprotected
mLSODACLsodaMethodprivate
mLSODARCLsodaMethodprivate
mLsodaStatusCLsodaMethodprotected
mMaxStepsReachedCTrajectoryMethodDsaLsodarprotected
mNextReactionIndexCTrajectoryMethodDsaLsodarprotected
mNextReactionTimeCTrajectoryMethodDsaLsodarprotected
mNumReactionsCTrajectoryMethodDsaLsodarprotected
mNumRootsCLsodaMethodprivate
mObjectDisplayNameCDataObjectmutableprivate
mObjectFlagCDataObjectprivate
mObjectNameCDataObjectprivate
mObjectsCDataContainerprotected
mObjectTypeCDataObjectprivate
ModelEntity enum valueCDataObject
mpAbsoluteToleranceCLsodaMethodprivate
mPartitionCTrajectoryMethodDsaLsodarprotected
mpAtolCLsodaMethodprivate
mpContainerCCopasiMethodprotected
mpContainerStateTimeCTrajectoryMethodprotected
mpDefaultCCopasiParameterprotected
mPeekAheadModeCLsodaMethodprivate
mpElementTemplatesCCopasiParameterGroupprivate
mpLowerLimitCTrajectoryMethodDsaLsodarprotected
mpMaxInternalStepsCLsodaMethodprivate
mpMaxInternalStepSizeCLsodaMethodprivate
mpMaxStepsCTrajectoryMethodDsaLsodarprotected
mpObjectDisplayNameCDataObjectmutableprivate
mpObjectNameCDataObjectmutableprivate
mpObjectParentCDataObjectprivate
mpPartitioningIntervalCTrajectoryMethodDsaLsodarprotected
mpPartitioningStepsCTrajectoryMethodDsaLsodarprotected
mpProblemCTrajectoryMethodprotected
mpRandomGeneratorCTrajectoryMethodDsaLsodarprotected
mpReducedModelCTrajectoryMethodprotected
mpRelativeToleranceCLsodaMethodprivate
mPrerequisitsCDataObjectprotected
mProcessReportCCopasiMethodprotected
mPropensityObjectsCTrajectoryMethodDsaLsodarprotected
mpTaskCTrajectoryMethodprotected
mpUpperLimitCTrajectoryMethodDsaLsodarprotected
mpUuidCUndoObjectInterfaceprivate
mpValidValuesCCopasiParameterprotected
mpValueCCopasiParameterprotected
mpValueReferenceCCopasiParametermutableprotected
mpYCLsodaMethodprivate
mpYdotCLsodaMethodprivate
mReactionsCTrajectoryMethodDsaLsodarprotected
mReferencedValiditiesCDataObjectprivate
mReferencesCDataObjectprotected
mRootCounterCLsodaMethodprivate
mRootMaskCLsodaMethodprivate
mRootMaskingCLsodaMethodprotected
mRootsFoundCTrajectoryMethodprotected
mSavedStateCLsodaMethodprivate
mStatusCTrajectoryMethodDsaLsodarprotected
mStepsAfterPartitionSystemCTrajectoryMethodDsaLsodarprotected
mSubTypeCCopasiMethodprivate
mTargetTimeCLsodaMethodprivate
mTaskCLsodaMethodprivate
mTaskTypeCCopasiMethodprivate
mTimeCLsodaMethodprotected
mTypeCCopasiParameterprivate
mUpdateSequencesCTrajectoryMethodDsaLsodarprotected
mUserInterfaceFlagCCopasiParameterprotected
mUuidLockedCUndoObjectInterfaceprivate
mValidityCObjectInterfacemutableprotected
name_iterator typedefCCopasiParameterGroup
NameVector enum valueCDataObject
NONE enum valueCLsodaMethodprotected
NonUniqueName enum valueCDataObject
NORMAL enum valueCTrajectoryMethod
objectMap typedefCDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)CDataContainer
ObjectSet typedefCObjectInterface
operator=(const CCopasiMethod &rhs)CCopasiMethod
CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs)CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)CCopasiParameter
output(const bool &useMoieties)CTrajectoryMethodprotected
peekAhead()CLsodaMethodprivate
prerequisitsContains(const DataObjectSet &objects) constCDataObject
print(std::ostream *ostream) constCCopasiMethodvirtual
printResult(std::ostream *ostream) constCCopasiMethodvirtual
ReducedModelCTrajectoryMethodprotectedstatic
Reference enum valueCDataObject
refreshAggregateValidity()CDataObjectprivate
remove(CDataObject *pObject)CCopasiParameterGroupvirtual
removeIssue(const CIssue &issue)CDataObject
removeParameter(const std::string &name)CCopasiParameterGroup
removeParameter(const size_t &index)CCopasiParameterGroup
removeParameter(CCopasiParameter *pParameter)CCopasiParameterGroup
removeReference(const CDataContainer *pReference)CDataObject
resetState(State &state)CLsodaMethodprivate
ROOT enum valueCTrajectoryMethod
Root enum valueCDataObject
sanitizeObjectName(std::string &name)CDataObjectstatic
saveState(State &state, const CTrajectoryMethod::Status &status) constCLsodaMethodprivate
Separator enum valueCDataObject
setCallBack(CProcessReportLevel callBack)CCopasiMethodvirtual
setDefault(const CType &defaultValue)CCopasiParameterinline
setDefault(const std::vector< CCopasiParameter * > &defaultValue)CCopasiParameter
setMathContainer(CMathContainer *pContainer)CCopasiMethod
setObjectName(const std::string &name)CDataObject
setObjectParent(const CDataContainer *pParent) overrideCCopasiParametervirtual
setProblem(CTrajectoryProblem *problem)CTrajectoryMethod
setRootMaskType(const eRootMasking &maskType)CLsodaMethodprivate
setUserInterfaceFlag(const UserInterfaceFlag &flag)CCopasiParameterGroupvirtual
setUuid(const xg::Guid &uuid)CUndoObjectInterface
setUuid(const std::string &uuid)CUndoObjectInterface
setValidValues(const std::vector< std::pair< CType, CType > > &validValues)CCopasiParameterinline
setValidValues(const CEnumAnnotation< CType, Enum > &validValues)CCopasiParameterinline
setValue(const std::string &name, const CType &value)CCopasiParameterGroupinline
setValue(const size_t &index, const CType &value)CCopasiParameterGroupinline
CCopasiParameter::setValue(const CType &value)CCopasiParameterinline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)CCopasiParameter
signalMathContainerChanged()CTrajectoryMethodprotectedvirtual
size(const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) constCCopasiParameterGroup
start()CTrajectoryMethodDsaLsodarvirtual
stateChange(const CMath::StateChange &change)CTrajectoryMethodDsaLsodarvirtual
StaticString enum valueCDataObject
Status enum nameCTrajectoryMethod
step(const double &deltaT, const bool &final=false)CTrajectoryMethodDsaLsodarvirtual
swap(const size_t &iFrom, const size_t &iTo)CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)CCopasiParameterGroup
toData() constCCopasiParameterGroupvirtual
Type enum nameCCopasiParameter
TypeNameCCopasiParameterstatic
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)CCopasiParameterGroupvirtual
UserInterfaceFlag typedefCCopasiParameter
validityChanged(const CValidity &changedValidity) overrideCDataObjectvirtual
validityRemoved(const CValidity &changedValidity)CDataObject
ValueBool enum valueCDataObject
ValueDbl enum valueCDataObject
ValueInt enum valueCDataObject
ValueInt64 enum valueCDataObject
ValueString enum valueCDataObject
Vector enum valueCDataObject
XMLTypeCCopasiParameterstatic
~CCopasiMethod()CCopasiMethodvirtual
~CCopasiParameter()CCopasiParametervirtual
~CCopasiParameterGroup()CCopasiParameterGroupvirtual
~CDataContainer()CDataContainervirtual
~CDataObject()CDataObjectvirtual
~CLsodaMethod()CLsodaMethod
~CObjectInterface()CObjectInterfacevirtual
~CTrajectoryMethod()CTrajectoryMethod
~CTrajectoryMethodDsaLsodar()CTrajectoryMethodDsaLsodar
~CUndoObjectInterface()CUndoObjectInterfacevirtual