CRDFUtilities Class Reference

#include <CRDFUtilities.h>

Public Member Functions
	CRDFUtilities ()
virtual	~CRDFUtilities ()

Static Public Member Functions
static bool	findNextElement (const std::string &rdfXml, const std::string &elementName, std::string::size_type &start, std::string::size_type &end)
static unsigned C_INT32	fixLocalFileAboutReference (std::string &rdfXml, const std::string &newId, const std::string &oldId)
static unsigned C_INT32	fixSBMLRdf (std::string &rdfXml)
static std::string	getNameSpaceQualifier (const std::string &rdfXml, const std::string &nameSpace)

Constructor & Destructor Documentation

CRDFUtilities()

CRDFUtilities::CRDFUtilities

(

)

Constructor

~CRDFUtilities()

CRDFUtilities::~CRDFUtilities ( )

virtual

Destructor

Member Function Documentation

findNextElement()

bool CRDFUtilities::findNextElement ( const std::string &  rdfXml, const std::string &  elementName, std::string::size_type &  start, std::string::size_type &  end  )

static

Find the the next XML element with the given name (either start or end).

Parameters

const	std::string & rdfXml
const	std::string & elementName
std::string::size_type	& start
std::string::size_type	& end

Returns

bool found

Referenced by fixLocalFileAboutReference(), and fixSBMLRdf().

fixLocalFileAboutReference()

unsigned C_INT32 CRDFUtilities::fixLocalFileAboutReference ( std::string &  rdfXml, const std::string &  newId, const std::string &  oldId  )

static

Fix local rdf:about attributes of the rdf:Description element. It returned the number of replacements made.

Parameters

std::string	& rdfXml
const	std::string & newId
const	std::string & oldId

Returns

unsigned C_INT32 replacements

References C_INT32, findNextElement(), and getNameSpaceQualifier().

Referenced by CAnnotation::operator==(), CAnnotation::setMiriamAnnotation(), and CSBMLExporter::updateMIRIAMAnnotation().

fixSBMLRdf()

unsigned C_INT32 CRDFUtilities::fixSBMLRdf ( std::string &  rdfXml )

static

Fix broken SBML RDF: <dc:creator rdf:parseType="Resource"> <rdf:Bag> It is not allowed to use the attribute rdf:parseType="Resource" and <rdf:Bag> simultaneously

Parameters

std::string

& rdfXml

Returns

unsigned C_INT32 corrections

References C_INT32, findNextElement(), getNameSpaceQualifier(), and min.

Referenced by CRDFGraphConverter::SBML2Copasi().

getNameSpaceQualifier()

std::string CRDFUtilities::getNameSpaceQualifier ( const std::string &  rdfXml, const std::string &  nameSpace  )

static

Find the qualifier for the given name space. Please note the qualifier if found has a ':' already appended.

Parameters

const	std::string & rdfXml
const	std::string & nameSpace

Returns

std::string qualifier

Referenced by fixLocalFileAboutReference(), and fixSBMLRdf().

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The documentation for this class was generated from the following files:

• CRDFUtilities.h
• CRDFUtilities.cpp