CILDMMethod Member List

This is the complete list of members for CILDMMethod, including all inherited members.

__SIZE enum value	CDataObject
add(CDataObject *pObject, const bool &adopt=true)	CDataContainer	virtual
addGroup(const std::string &name)	CCopasiParameterGroup
addIssue(const CIssue &issue)	CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addParameter(const CCopasiParameter &parameter)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup	inline
addParameter(CCopasiParameter *pParameter)	CCopasiParameterGroup
addReference(const CDataContainer *pReference)	CDataObject
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
allocateValidValues(const Type &type, void *&pValidValues)	CCopasiParameter	static
allocateValue(const Type &type, void *&pValue)	CCopasiParameter	static
appendDeletedDependentData(CUndoData &undoData) const	CDataContainer	virtual
applyData(const CData &data, CUndoData::CChangeSet &changes)	CCopasiParameterGroup	virtual
Array enum value	CDataObject
assertGroup(const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup	inline
assignDefault(const void *pDefault)	CCopasiParameter	private
assignValidValues(const void *pValidValues)	CCopasiParameter	private
assignValue(const Type &type, void *&pValue, const void *pNewValue)	CCopasiParameter	static
assignValue(const void *pValue)	CCopasiParameter	private
beginIndex() const	CCopasiParameterGroup
beginName() const	CCopasiParameterGroup
calculateDerivatives(C_FLOAT64 *X1, C_FLOAT64 *Y1, bool useReducedModel)	CTSSAMethod	protected
calculateValue() override	CDataObject	virtual
CCopasiMethod()	CCopasiMethod	private
CCopasiMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType)	CCopasiMethod	protected
CCopasiMethod(const CCopasiMethod &src)	CCopasiMethod	protected
CCopasiMethod(const CCopasiMethod &src, const CDataContainer *pParent)	CCopasiMethod
CCopasiParameter(const CCopasiParameter &src)	CCopasiParameter	protected
CCopasiParameter()	CCopasiParameter	private
CCopasiParameter(const CCopasiParameter &src, const CDataContainer *pParent)	CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter")	CCopasiParameter
CCopasiParameterGroup()	CCopasiParameterGroup	protected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)	CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")	CCopasiParameterGroup
CDataContainer()	CDataContainer	private
CDataContainer(const CDataContainer &src)	CDataContainer	protected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)	CDataContainer
CDataObject()	CDataObject	protected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataObject	protected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)	CDataObject
CILDMMethod()	CILDMMethod	private
CILDMMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::tssILDM, const CTaskEnum::Task &taskType=CTaskEnum::Task::tssAnalysis)	CILDMMethod
CILDMMethod(const CILDMMethod &src, const CDataContainer *pParent)	CILDMMethod
clear()	CCopasiParameterGroup
clearCallBack()	CCopasiMethod	virtual
CObjectInterface()	CObjectInterface
CObjectInterface(const CObjectInterface &src)	CObjectInterface
const_name_iterator typedef	CCopasiParameterGroup
Container enum value	CDataObject
ContainerList typedef	CObjectInterface
createAnnotationsM()	CILDMMethod	virtual
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const	CCopasiParameterGroup	virtual
createValue()	CCopasiParameter	private
CTSSAMethod()	CTSSAMethod	private
CTSSAMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType=CTaskEnum::Task::tssAnalysis)	CTSSAMethod
CTSSAMethod(const CTSSAMethod &src, const CDataContainer *pParent)	CTSSAMethod
CUndoObjectInterface()	CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)	CUndoObjectInterface
DataModel enum value	CDataObject
DataObject(const CObjectInterface *pInterface)	CObjectInterface	static
DataObjectSet typedef	CDataObject
deleteValidValues(const Type &type, void *&pValidValues)	CCopasiParameter	static
deleteValue(const Type &type, void *&pValue)	CCopasiParameter	static
destruct() override	CDataObject	virtual
deuflhard(C_INT &slow, C_INT &info)	CILDMMethod	protected
DisplayName enum value	CDataObject
elements typedef	CCopasiParameterGroup
elevateChildren()	CTSSAMethod	protectedvirtual
EmptyList	CDataContainer	static
emptyVectors()	CILDMMethod
endIndex() const	CCopasiParameterGroup
endName() const	CCopasiParameterGroup
eUserInterfaceFlag enum name	CCopasiParameter
Flag enum name	CDataObject
fromData(const CData &data, CUndoObjectInterface *pParent)	CCopasiParameter	static
generateUuid()	CUndoObjectInterface
getCallBack() const	CCopasiMethod
getChildObjectUnits(const CDataObject *pObject) const	CDataContainer	virtual
getCN() const override	CCopasiParameter	virtual
getCurrentStep() const	CTSSAMethod
getDataObject() const override	CDataObject	virtual
getDefault() const	CCopasiParameter	inline
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const	CDataContainer
getElementTemplates()	CCopasiParameterGroup
getElementTemplates() const	CCopasiParameterGroup
getGroup(const std::string &name)	CCopasiParameterGroup
getGroup(const std::string &name) const	CCopasiParameterGroup
getGroup(const size_t &index)	CCopasiParameterGroup
getGroup(const size_t &index) const	CCopasiParameterGroup
getIndex(const CDataObject *pObject) const	CCopasiParameterGroup	virtual
getIndex(const std::string &name) const	CCopasiParameterGroup
getKey(const std::string &name) const	CCopasiParameterGroup
getKey(const size_t &index) const	CCopasiParameterGroup
CCopasiParameter::getKey() const override	CCopasiParameter	virtual
getMathContainer() const	CCopasiMethod
getName(const size_t &index) const	CCopasiParameterGroup	virtual
getObject(const CCommonName &cn) const	CCopasiParameterGroup	virtual
getObjectAncestor(const std::string &type) const	CDataObject
getObjectDataModel() const	CDataObject
getObjectDisplayName() const override	CCopasiParameter	virtual
getObjectFromCN(const CCommonName &cn) const	CDataObject
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)	CObjectInterface	static
getObjectName() const	CDataObject
getObjectParent() const	CDataObject
getObjects() const	CDataContainer	virtual
getObjects()	CDataContainer	virtual
getObjectType() const	CDataObject
getParameter(std::string name)	CCopasiParameterGroup
getParameter(std::string name) const	CCopasiParameterGroup
getParameter(const size_t &index)	CCopasiParameterGroup
getParameter(const size_t &index) const	CCopasiParameterGroup
getPrerequisites() const override	CDataObject	virtual
getReacSlowSpacePrintAnn() const	CILDMMethod
getSubType() const	CCopasiMethod
getTable(const std::string &name)	CTSSAMethod
getTableNames() const	CTSSAMethod
getTimeForStep(int step) const	CTSSAMethod
getTMP1PrintAnn() const	CILDMMethod
getTMP2PrintAnn() const	CILDMMethod
getTMP3PrintAnn() const	CILDMMethod
getType() const	CCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) const	CCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) const	CCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) const	CCopasiParameterGroup
getUnits() const override	CDataContainer	virtual
getUserInterfaceFlag() const	CCopasiParameter
getUuid() const	CUndoObjectInterface
getValidity() const override	CDataObject	virtual
getValidValues() const	CCopasiParameter	inline
getValidValues()	CCopasiParameter	inline
getValidValuesPointer() const	CCopasiParameter
getValue(const std::string &name) const	CCopasiParameterGroup	inline
getValue(const std::string &name)	CCopasiParameterGroup	inline
getValue(const size_t &index) const	CCopasiParameterGroup	inline
getValue(const size_t &index)	CCopasiParameterGroup	inline
CCopasiParameter::getValue() const	CCopasiParameter	inline
CCopasiParameter::getValue()	CCopasiParameter	inline
getValueObject() const override	CDataContainer	virtual
getValuePointer() const override	CCopasiParameter	virtual
getValueReference() const	CCopasiParameter
getVec_TimeScale(int step)	CTSSAMethod
getVfastSpacePrintAnn() const	CILDMMethod
getVslowMetabPrintAnn() const	CILDMMethod
getVslowPrintAnn() const	CILDMMethod
getVslowSpacePrintAnn() const	CILDMMethod
Gui enum value	CDataObject
hasFlag(const Flag &flag) const	CDataObject
hasValidValues() const	CCopasiParameter
haveTemplate() const	CCopasiParameterGroup
index_iterator typedef	CCopasiParameterGroup
initializeOutput()	CILDMMethod	virtual
initializeParameter()	CILDMMethod	virtual
initObjects()	CDataContainer	protected
insert(const CData &data)	CCopasiParameterGroup	virtual
integrationMethodStart()	CTSSAMethod	protected
integrationStep(const double &deltaT)	CTSSAMethod	protected
inValidValues(const CType &value) const	CCopasiParameter	inlineprivate
isBasic() const	CCopasiParameter
isDefault() const	CCopasiParameter
isEditable() const	CCopasiParameter
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override	CDataObject	virtual
isUnsupported() const	CCopasiParameter
isValidProblem(const CCopasiProblem *pProblem)	CTSSAMethod	virtual
isValidValue(const C_FLOAT64 &value) const	CCopasiParameter
isValidValue(const C_INT32 &value) const	CCopasiParameter
isValidValue(const unsigned C_INT32 &value) const	CCopasiParameter
isValidValue(const bool &value) const	CCopasiParameter
isValidValue(const std::string &value) const	CCopasiParameter
isValidValue(const CCommonName &value) const	CCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) const	CCopasiParameter
isValidValue(const CType &) const	CCopasiParameter	inline
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)	CCopasiMethod	virtual
mAggregateValidity	CDataObject	private
map_index(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim)	CTSSAMethod	protected
map_index_desc(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim)	CTSSAMethod	protected
mapTableToName	CTSSAMethod	protected
mat_anal_fast_space(C_INT &slow)	CTSSAMethod	protected
mat_anal_fast_space_thomas(C_INT &slow)	CTSSAMethod	protected
mat_anal_metab(C_INT &slow)	CTSSAMethod	protected
mat_anal_mod(C_INT &slow)	CTSSAMethod	protected
mat_anal_mod_space(C_INT &slow)	CTSSAMethod	protected
Matrix enum value	CDataObject
mCfast	CTSSAMethod	protected
mConcentration2Number	CTSSAMethod	protected
mContainerState	CTSSAMethod	protected
mCurrentStep	CTSSAMethod	protected
mCurrentTime	CTSSAMethod	protected
mDim	CTSSAMethod	protected
mDtol	CTSSAMethod	protected
mEPS	CTSSAMethod	protected
mJacobian	CTSSAMethod	protected
mJacobian_initial	CTSSAMethod	protected
mKey	CCopasiParameter	protected
mNumber2Concentration	CTSSAMethod	protected
mObjectDisplayName	CDataObject	mutableprivate
mObjectFlag	CDataObject	private
mObjectName	CDataObject	private
mObjects	CDataContainer	protected
mObjectType	CDataObject	private
ModelEntity enum value	CDataObject
mpContainer	CCopasiMethod	protected
mpContainerStateTime	CTSSAMethod	protected
mpDefault	CCopasiParameter	protected
mpElementTemplates	CCopasiParameterGroup	private
mpFirstSpecies	CTSSAMethod	protected
mpFirstSpeciesRate	CTSSAMethod	protected
mpLsodaMethod	CTSSAMethod	protected
mpObjectDisplayName	CDataObject	mutableprivate
mpObjectName	CDataObject	mutableprivate
mpObjectParent	CDataObject	private
mpProblem	CTSSAMethod	protected
mPrerequisits	CDataObject	protected
mProcessReport	CCopasiMethod	protected
mpUuid	CUndoObjectInterface	private
mpValidValues	CCopasiParameter	protected
mpValue	CCopasiParameter	protected
mpValueReference	CCopasiParameter	mutableprotected
mQ	CTSSAMethod	protected
mQ_desc	CTSSAMethod	protected
mQz	CTSSAMethod	protected
mR	CTSSAMethod	protected
mR_desc	CTSSAMethod	protected
mReacSlowSpace	CILDMMethod	protected
mReacSlowSpacePrint	CILDMMethod	protected
mReferencedValidities	CDataObject	private
mReferences	CDataObject	protected
mSlow	CTSSAMethod	protected
mSubType	CCopasiMethod	private
mTaskType	CCopasiMethod	private
mTd	CTSSAMethod	protected
mTd_save	CTSSAMethod	protected
mTdInverse	CTSSAMethod	protected
mTdInverse_save	CTSSAMethod	protected
mTMP1	CILDMMethod	protected
mTMP1Print	CILDMMethod	protected
mTMP2	CILDMMethod	protected
mTMP2Print	CILDMMethod	protected
mTMP3	CILDMMethod	protected
mTMP3Print	CILDMMethod	protected
mType	CCopasiParameter	private
mUserInterfaceFlag	CCopasiParameter	protected
mUuidLocked	CUndoObjectInterface	private
mValidity	CObjectInterface	mutableprotected
mVec_mReacSlowSpace	CILDMMethod	protected
mVec_mTMP1	CILDMMethod	protected
mVec_mTMP2	CILDMMethod	protected
mVec_mTMP3	CILDMMethod	protected
mVec_mVfastSpace	CILDMMethod	protected
mVec_mVslow	CILDMMethod	protected
mVec_mVslowMetab	CILDMMethod	protected
mVec_mVslowSpace	CILDMMethod	protected
mVec_SlowModes	CTSSAMethod	protected
mVec_TimeScale	CTSSAMethod	protected
mVfast_space	CTSSAMethod	protected
mVfastSpacePrint	CILDMMethod	protected
mVslow	CTSSAMethod	protected
mVslow_metab	CTSSAMethod	protected
mVslow_space	CTSSAMethod	protected
mVslowMetabPrint	CILDMMethod	protected
mVslowPrint	CILDMMethod	protected
mVslowSpacePrint	CILDMMethod	protected
mY_cons	CTSSAMethod	protected
mY_initial	CTSSAMethod	protected
name_iterator typedef	CCopasiParameterGroup
NameVector enum value	CDataObject
newton(C_FLOAT64 *ys, C_INT &slow, C_INT &info)	CILDMMethod	protected
NonUniqueName enum value	CDataObject
objectMap typedef	CDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)	CDataContainer
ObjectSet typedef	CObjectInterface
operator=(const CCopasiMethod &rhs)	CCopasiMethod
CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs)	CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)	CCopasiParameter
orthog(C_INT &number1, C_INT &number2)	CTSSAMethod	protected
pReacSlowSpacePrintAnn	CILDMMethod	protected
prerequisitsContains(const DataObjectSet &objects) const	CDataObject
print(std::ostream *ostream) const	CCopasiMethod	virtual
printResult(std::ostream *ostream) const	CILDMMethod	virtual
pTmp1	CILDMMethod	protected
pTMP1	CILDMMethod	protected
pTMP1PrintAnn	CILDMMethod	protected
pTMP2	CILDMMethod	protected
pTmp2	CILDMMethod	protected
pTMP2PrintAnn	CILDMMethod	protected
pTMP3	CILDMMethod	protected
pTmp3	CILDMMethod	protected
pTMP3PrintAnn	CILDMMethod	protected
pTmp4	CILDMMethod	protected
pTmp5	CILDMMethod	protected
pVfastSpacePrintAnn	CILDMMethod	protected
pVslowMetabPrintAnn	CILDMMethod	protected
pVslowPrintAnn	CILDMMethod	protected
pVslowSpacePrintAnn	CILDMMethod	protected
Reference enum value	CDataObject
refreshAggregateValidity()	CDataObject	private
remove(CDataObject *pObject)	CCopasiParameterGroup	virtual
removeIssue(const CIssue &issue)	CDataObject
removeParameter(const std::string &name)	CCopasiParameterGroup
removeParameter(const size_t &index)	CCopasiParameterGroup
removeParameter(CCopasiParameter *pParameter)	CCopasiParameterGroup
removeReference(const CDataContainer *pReference)	CDataObject
Root enum value	CDataObject
sanitizeObjectName(std::string &name)	CDataObject	static
schur(C_INT &info)	CTSSAMethod	protected
schur_desc(C_INT &info)	CTSSAMethod	protected
Separator enum value	CDataObject
setAnnotationM(size_t step)	CILDMMethod	virtual
setCallBack(CProcessReportLevel callBack)	CCopasiMethod	virtual
setDefault(const CType &defaultValue)	CCopasiParameter	inline
setDefault(const std::vector< CCopasiParameter * > &defaultValue)	CCopasiParameter
setMathContainer(CMathContainer *pContainer)	CCopasiMethod
setObjectName(const std::string &name)	CDataObject
setObjectParent(const CDataContainer *pParent) override	CCopasiParameter	virtual
setProblem(CTSSAProblem *problem)	CTSSAMethod
setUserInterfaceFlag(const UserInterfaceFlag &flag)	CCopasiParameterGroup	virtual
setUuid(const xg::Guid &uuid)	CUndoObjectInterface
setUuid(const std::string &uuid)	CUndoObjectInterface
setValidValues(const std::vector< std::pair< CType, CType > > &validValues)	CCopasiParameter	inline
setValidValues(const CEnumAnnotation< CType, Enum > &validValues)	CCopasiParameter	inline
setValue(const std::string &name, const CType &value)	CCopasiParameterGroup	inline
setValue(const size_t &index, const CType &value)	CCopasiParameterGroup	inline
CCopasiParameter::setValue(const CType &value)	CCopasiParameter	inline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)	CCopasiParameter
setVectors(int slowMode)	CILDMMethod
signalMathContainerChanged()	CCopasiMethod	protectedvirtual
size(const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const	CCopasiParameterGroup
start()	CILDMMethod	virtual
StaticString enum value	CDataObject
step(const double &deltaT)	CILDMMethod	virtual
swap(const size_t &iFrom, const size_t &iTo)	CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)	CCopasiParameterGroup
sylvester(C_INT slow, C_INT &info)	CTSSAMethod	protected
tableNames	CTSSAMethod	protected
toData() const	CCopasiParameterGroup	virtual
transformation_norm(C_INT &slow, C_INT &info)	CILDMMethod	protected
Type enum name	CCopasiParameter
TypeName	CCopasiParameter	static
update_nid(C_INT *index, C_INT *nid, const C_INT &dim)	CTSSAMethod	protected
update_pid(C_INT *index, C_INT *pid, const C_INT &dim)	CTSSAMethod	protected
updateCurrentTime()	CTSSAMethod	protectedvirtual
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)	CCopasiParameterGroup	virtual
UserInterfaceFlag typedef	CCopasiParameter
validityChanged(const CValidity &changedValidity) override	CDataObject	virtual
validityRemoved(const CValidity &changedValidity)	CDataObject
ValueBool enum value	CDataObject
ValueDbl enum value	CDataObject
ValueInt enum value	CDataObject
ValueInt64 enum value	CDataObject
ValueString enum value	CDataObject
Vector enum value	CDataObject
XMLType	CCopasiParameter	static
~CCopasiMethod()	CCopasiMethod	virtual
~CCopasiParameter()	CCopasiParameter	virtual
~CCopasiParameterGroup()	CCopasiParameterGroup	virtual
~CDataContainer()	CDataContainer	virtual
~CDataObject()	CDataObject	virtual
~CILDMMethod()	CILDMMethod	virtual
~CObjectInterface()	CObjectInterface	virtual
~CTSSAMethod()	CTSSAMethod	virtual
~CUndoObjectInterface()	CUndoObjectInterface	virtual