adaptiveSA enum value | CCopasiMethod | |
add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addGroup(const std::string &name) | CCopasiParameterGroup | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addParameter(const CCopasiParameter ¶meter) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value) | CCopasiParameterGroup | inline |
addParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
Array enum value | CCopasiObject | protected |
assertGroup(const std::string &name) | CCopasiParameterGroup | |
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue) | CCopasiParameterGroup | inline |
beginIndex() const | CCopasiParameterGroup | |
beginName() const | CCopasiParameterGroup | |
BOOL enum value | CCopasiParameter | |
buildInformants() | COptMethodPS | private |
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiMethod(const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL) | CCopasiMethod | protected |
CCopasiMethod(const CCopasiMethod &src, const CCopasiContainer *pParent=NULL) | CCopasiMethod | |
CCopasiObject() | CCopasiObject | protected |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL) | CCopasiParameter | |
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter") | CCopasiParameter | |
CCopasiParameterGroup() | CCopasiParameterGroup | protected |
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL) | CCopasiParameterGroup | |
CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup") | CCopasiParameterGroup | |
cleanup() | COptMethodPS | privatevirtual |
clear() | CCopasiParameterGroup | |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
CN enum value | CCopasiParameter | |
CObjectInterface() | CObjectInterface | inline |
Container enum value | CCopasiObject | protected |
COptMethod(const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL) | COptMethod | protected |
COptMethod(const COptMethod &src, const CCopasiContainer *pParent=NULL) | COptMethod | |
COptMethod::createMethod(CCopasiMethod::SubType subType) | COptMethodPS | friend |
COptMethodPS(const COptMethodPS &src, const CCopasiContainer *pParent=NULL) | COptMethodPS | |
COptMethodPS(const CCopasiContainer *pParent=NULL) | COptMethodPS | private |
CoranaWalk enum value | CCopasiMethod | |
create(const size_t &index) | COptMethodPS | private |
createMethod(CCopasiMethod::SubType subType=CCopasiMethod::RandomSearch) | COptMethod | static |
crossSectionMethod enum value | CCopasiMethod | |
DataModel enum value | CCopasiObject | protected |
DataObjectSet typedef | CCopasiObject | |
DataUpdateSequence typedef | CCopasiObject | |
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
deterministic enum value | CCopasiMethod | |
DifferentialEvolution enum value | CCopasiMethod | |
directMethod enum value | CCopasiMethod | |
DOUBLE enum value | CCopasiParameter | |
DsaLsodar enum value | CCopasiMethod | |
EFMAlgorithm enum value | CCopasiMethod | |
EFMBitPatternAlgorithm enum value | CCopasiMethod | |
EFMBitPatternTreeAlgorithm enum value | CCopasiMethod | |
elevateChildren() | CCopasiParameterGroup | virtual |
EmptyList | CCopasiContainer | static |
endIndex() const | CCopasiParameterGroup | |
endName() const | CCopasiParameterGroup | |
evaluate() | COptMethodPS | private |
EvolutionaryProgram enum value | CCopasiMethod | |
EXPRESSION enum value | CCopasiParameter | |
FILE enum value | CCopasiParameter | |
Flag enum name | CCopasiObject | protected |
GeneticAlgorithm enum value | CCopasiMethod | |
GeneticAlgorithmSR enum value | CCopasiMethod | |
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
getCN() const | CCopasiParameter | virtual |
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
getGroup(const std::string &name) | CCopasiParameterGroup | |
getGroup(const std::string &name) const | CCopasiParameterGroup | |
getGroup(const size_t &index) | CCopasiParameterGroup | |
getGroup(const size_t &index) const | CCopasiParameterGroup | |
getIndex(const std::string &name) const | CCopasiParameterGroup | |
getKey(const std::string &name) const | CCopasiParameterGroup | |
getKey(const size_t &index) const | CCopasiParameterGroup | |
CCopasiParameter::getKey() const | CCopasiParameter | virtual |
getName(const size_t &index) const | CCopasiParameterGroup | virtual |
getObject(const CCopasiObjectName &cn) const | CCopasiParameterGroup | virtual |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiParameter | virtual |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | virtual |
getObjectType() const | CCopasiObject | |
getParameter(const std::string &name) | CCopasiParameterGroup | |
getParameter(const std::string &name) const | CCopasiParameterGroup | |
getParameter(const size_t &index) | CCopasiParameterGroup | |
getParameter(const size_t &index) const | CCopasiParameterGroup | |
getPrerequisites() const | CCopasiObject | virtual |
getRefresh() const | CCopasiObject | virtual |
getSubType() const | CCopasiMethod | |
getType() const | CCopasiMethod | |
CCopasiParameterGroup::getType(const std::string &name) const | CCopasiParameterGroup | |
CCopasiParameterGroup::getType(const size_t &index) const | CCopasiParameterGroup | |
getUniqueParameterName(const CCopasiParameter *pParameter) const | CCopasiParameterGroup | |
getUnits() const | CCopasiContainer | virtual |
getUpdateMethod() const | CCopasiObject | |
getValue(const std::string &name) const | CCopasiParameterGroup | |
getValue(const size_t &index) const | CCopasiParameterGroup | |
getValue(const std::string &name) | CCopasiParameterGroup | |
getValue(const size_t &index) | CCopasiParameterGroup | |
CCopasiParameter::getValue() const | CCopasiParameter | |
CCopasiParameter::getValue() | CCopasiParameter | |
getValueObject() const | CCopasiContainer | virtual |
getValuePointer() const | CCopasiParameter | virtual |
getValueReference() const | CCopasiParameter | |
GROUP enum value | CCopasiParameter | |
Gui enum value | CCopasiObject | protected |
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
hasUpdateMethod() const | CCopasiObject | |
HookeJeeves enum value | CCopasiMethod | |
Householder enum value | CCopasiMethod | |
hybrid enum value | CCopasiMethod | |
HybridGASA enum value | CCopasiMethod | |
hybridLSODA enum value | CCopasiMethod | |
hybridODE45 enum value | CCopasiMethod | |
index_iterator typedef | CCopasiParameterGroup | |
initialize() | COptMethodPS | privatevirtual |
initObjects() | COptMethodPS | private |
INT enum value | CCopasiParameter | |
INVALID enum value | CCopasiParameter | |
isArray() const | CCopasiObject | |
isBounded(void) | COptMethod | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isValidProblem(const CCopasiProblem *pProblem) | COptMethod | virtual |
isValidValue(const C_FLOAT64 &value) const | CCopasiParameter | |
isValidValue(const C_INT32 &value) const | CCopasiParameter | |
isValidValue(const unsigned C_INT32 &value) const | CCopasiParameter | |
isValidValue(const bool &value) const | CCopasiParameter | |
isValidValue(const std::string &value) const | CCopasiParameter | |
isValidValue(const CCopasiObjectName &value) const | CCopasiParameter | |
isValidValue(const std::vector< CCopasiParameter * > &value) const | CCopasiParameter | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueInt64() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
KEY enum value | CCopasiParameter | |
LevenbergMarquardt enum value | CCopasiMethod | |
linearNoiseApproximation enum value | CCopasiMethod | |
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH) | CCopasiMethod | virtual |
LSODAR enum value | CCopasiMethod | |
lyapWolf enum value | CCopasiMethod | |
Matrix enum value | CCopasiObject | protected |
mBestIndex | COptMethodPS | private |
mBestPositions | COptMethodPS | private |
mBestValues | COptMethodPS | private |
mBounds | COptMethod | protected |
mcaMethodReder enum value | CCopasiMethod | |
mContinue | COptMethodPS | private |
mEvaluationValue | COptMethodPS | private |
mhIteration | COptMethodPS | private |
mIndividuals | COptMethodPS | private |
mInformants | COptMethodPS | private |
mIteration | COptMethodPS | private |
mIterationLimit | COptMethodPS | private |
mKey | CCopasiParameter | protected |
mNumInformed | COptMethodPS | private |
mNumInformedMin | COptMethodPS | private |
mObjects | CCopasiContainer | protected |
ModelEntity enum value | CCopasiObject | protected |
move(const size_t &index) | COptMethodPS | private |
mpCallBack | CCopasiMethod | protected |
mpOptContraints | COptMethod | protected |
mpOptItem | COptMethod | protected |
mpOptProblem | COptMethod | protected |
mpParentTask | COptMethod | protected |
mpPermutation | COptMethodPS | private |
mpRandom | COptMethodPS | private |
mpSetCalculateVariable | COptMethod | protected |
mpValueReference | CCopasiParameter | mutableprotected |
mSize | CCopasiParameter | protected |
mSwarmSize | COptMethodPS | private |
mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
mValue | CCopasiParameter | protected |
mValues | COptMethodPS | private |
mVariableSize | COptMethodPS | private |
mVariance | COptMethodPS | private |
mVelocities | COptMethodPS | private |
name_iterator typedef | CCopasiParameterGroup | |
NameVector enum value | CCopasiObject | protected |
NelderMead enum value | CCopasiMethod | |
Newton enum value | CCopasiMethod | |
NonUniqueName enum value | CCopasiObject | protected |
objectMap typedef | CCopasiContainer | |
ObjectSet typedef | CObjectInterface | |
operator=(const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | |
CCopasiParameter::operator=(const CCopasiParameter &rhs) | CCopasiParameter | |
optimise() | COptMethodPS | virtual |
parameterGroup typedef | CCopasiParameterGroup | |
ParticleSwarm enum value | CCopasiMethod | |
Praxis enum value | CCopasiMethod | |
print(std::ostream *ostream) const | CCopasiMethod | virtual |
printResult(std::ostream *ostream) const | CCopasiMethod | virtual |
RandomSearch enum value | CCopasiMethod | |
RandomSearchMaster enum value | CCopasiMethod | |
reachedStdDeviation() | COptMethodPS | private |
Reference enum value | CCopasiObject | protected |
remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
removeParameter(const std::string &name) | CCopasiParameterGroup | |
removeParameter(const size_t &index) | CCopasiParameterGroup | |
Root enum value | CCopasiObject | protected |
scanMethod enum value | CCopasiMethod | |
ScatterSearch enum value | CCopasiMethod | |
sensMethod enum value | CCopasiMethod | |
Separator enum value | CCopasiObject | protected |
setCallBack(CProcessReport *pCallBack) | CCopasiMethod | virtual |
setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setProblem(COptProblem *problem) | COptMethod | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
setValue(const std::string &name, const CType &value) | CCopasiParameterGroup | inline |
setValue(const size_t &index, const CType &value) | CCopasiParameterGroup | inline |
CCopasiParameter::setValue(const CType &value) | CCopasiParameter | inline |
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value) | CCopasiParameter | |
SimulatedAnnealing enum value | CCopasiMethod | |
size() const | CCopasiParameterGroup | |
smpRenameHandler | CCopasiObject | protectedstatic |
SRES enum value | CCopasiMethod | |
StaticString enum value | CCopasiObject | protected |
Statistics enum value | CCopasiMethod | |
SteepestDescent enum value | CCopasiMethod | |
stochastic enum value | CCopasiMethod | |
STRING enum value | CCopasiParameter | |
SubType enum name | CCopasiMethod | |
SubTypeName | CCopasiMethod | static |
swap(const size_t &iFrom, const size_t &iTo) | CCopasiParameterGroup | |
swap(index_iterator &from, index_iterator &to) | CCopasiParameterGroup | |
tauLeap enum value | CCopasiMethod | |
TruncatedNewton enum value | CCopasiMethod | |
tssCSP enum value | CCopasiMethod | |
tssILDM enum value | CCopasiMethod | |
tssILDMModified enum value | CCopasiMethod | |
Type enum name | CCopasiParameter | |
TypeName | CCopasiParameter | static |
UDOUBLE enum value | CCopasiParameter | |
UINT enum value | CCopasiParameter | |
unset enum value | CCopasiMethod | |
UpdateSequence typedef | CObjectInterface | |
ValueBool enum value | CCopasiObject | protected |
ValueDbl enum value | CCopasiObject | protected |
ValueInt enum value | CCopasiObject | protected |
ValueInt64 enum value | CCopasiObject | protected |
ValueString enum value | CCopasiObject | protected |
Vector enum value | CCopasiObject | protected |
XMLSubType | CCopasiMethod | static |
XMLType | CCopasiParameter | static |
~CCopasiContainer() | CCopasiContainer | virtual |
~CCopasiMethod() | CCopasiMethod | virtual |
~CCopasiObject() | CCopasiObject | virtual |
~CCopasiParameter() | CCopasiParameter | virtual |
~CCopasiParameterGroup() | CCopasiParameterGroup | virtual |
~CObjectInterface() | CObjectInterface | inlinevirtual |
~COptMethod() | COptMethod | virtual |
~COptMethodPS() | COptMethodPS | virtual |