CAbstractLayoutInterface Class Reference

#include <CAbstractLayoutInterface.h>

Inheritance diagram for CAbstractLayoutInterface:

Classes
class	VariableDescription

Public Member Functions
	CAbstractLayoutInterface ()
virtual const std::vector< double > &	getInitialValues () const =0
virtual const std::vector< double > &	getMassVector () const
std::vector< double >::size_type	getNumVariables () const
virtual double	getPotential ()=0
const std::vector< VariableDescription > &	getVariablesDescription () const
virtual bool	setState (const std::vector< double > &vars)=0
virtual	~CAbstractLayoutInterface ()

Protected Attributes
std::vector< double >	mMassVector
std::vector< VariableDescription >	mVarDescription

Detailed Description

This abstract class describes how an optimization algorithm will see a layout.

Constructor & Destructor Documentation

CAbstractLayoutInterface()

CAbstractLayoutInterface::CAbstractLayoutInterface ( )

inline

~CAbstractLayoutInterface()

virtual CAbstractLayoutInterface::~CAbstractLayoutInterface ( )

inlinevirtual

Member Function Documentation

getInitialValues()

virtual const std::vector<double>& CAbstractLayoutInterface::getInitialValues ( ) const

pure virtual

Implemented in CCopasiSpringLayout.

Referenced by CLayoutEngine::CLayoutEngine().

getMassVector()

const std::vector< double > & CAbstractLayoutInterface::getMassVector ( ) const

virtual

References mMassVector.

Referenced by CLayoutEngine::calcRHS().

getNumVariables()

std::vector< double >::size_type CAbstractLayoutInterface::getNumVariables

(

)

const

References mVarDescription.

Referenced by CLayoutEngine::calcForces(), and CLayoutEngine::calcRHS().

getPotential()

virtual double CAbstractLayoutInterface::getPotential ( )

pure virtual

Implemented in CCopasiSpringLayout.

Referenced by CLayoutEngine::calcForces(), and CLayoutEngine::step().

getVariablesDescription()

const std::vector< CAbstractLayoutInterface::VariableDescription > & CAbstractLayoutInterface::getVariablesDescription

(

)

const

References mVarDescription.

setState()

virtual bool CAbstractLayoutInterface::setState ( const std::vector< double > &  vars )

pure virtual

Implemented in CCopasiSpringLayout.

Referenced by CLayoutEngine::calcForces(), CLayoutEngine::step(), and CLayoutEngine::stepIntegration().

Member Data Documentation

mMassVector

std::vector<double> CAbstractLayoutInterface::mMassVector

protected

Referenced by CCopasiSpringLayout::addCompartmentVariables(), CCopasiSpringLayout::addPositionVariables(), CCopasiSpringLayout::addReactionVariables(), CCopasiSpringLayout::createVariables(), and getMassVector().

mVarDescription

std::vector<VariableDescription> CAbstractLayoutInterface::mVarDescription

protected

Referenced by CCopasiSpringLayout::addCompartmentVariables(), CCopasiSpringLayout::addPositionVariables(), CCopasiSpringLayout::addReactionVariables(), CCopasiSpringLayout::createVariables(), getNumVariables(), getVariablesDescription(), and CCopasiSpringLayout::setState().

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The documentation for this class was generated from the following files:

• CAbstractLayoutInterface.h
• CAbstractLayoutInterface.cpp