COPASI API  4.40.278
CILDMModifiedMethod Member List

This is the complete list of members for CILDMModifiedMethod, including all inherited members.

__SIZE enum valueCDataObject
add(CDataObject *pObject, const bool &adopt=true)CDataContainervirtual
addGroup(const std::string &name)CCopasiParameterGroup
addIssue(const CIssue &issue)CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addParameter(const CCopasiParameter &parameter)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroupinline
addParameter(CCopasiParameter *pParameter)CCopasiParameterGroup
addReference(const CDataContainer *pReference)CDataObject
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
allocateValidValues(const Type &type, void *&pValidValues)CCopasiParameterstatic
allocateValue(const Type &type, void *&pValue)CCopasiParameterstatic
appendDeletedDependentData(CUndoData &undoData) constCDataContainervirtual
applyData(const CData &data, CUndoData::CChangeSet &changes)CCopasiParameterGroupvirtual
Array enum valueCDataObject
assertGroup(const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroupinline
assignDefault(const void *pDefault)CCopasiParameterprivate
assignValidValues(const void *pValidValues)CCopasiParameterprivate
assignValue(const Type &type, void *&pValue, const void *pNewValue)CCopasiParameterstatic
assignValue(const void *pValue)CCopasiParameterprivate
beginIndex() constCCopasiParameterGroup
beginName() constCCopasiParameterGroup
calculateDerivatives(C_FLOAT64 *X1, C_FLOAT64 *Y1, bool useReducedModel)CTSSAMethodprotected
calculateValue() overrideCDataObjectvirtual
CCopasiMethod()CCopasiMethodprivate
CCopasiMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType)CCopasiMethodprotected
CCopasiMethod(const CCopasiMethod &src)CCopasiMethodprotected
CCopasiMethod(const CCopasiMethod &src, const CDataContainer *pParent)CCopasiMethod
CCopasiParameter(const CCopasiParameter &src)CCopasiParameterprotected
CCopasiParameter()CCopasiParameterprivate
CCopasiParameter(const CCopasiParameter &src, const CDataContainer *pParent)CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter")CCopasiParameter
CCopasiParameterGroup()CCopasiParameterGroupprotected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")CCopasiParameterGroup
CDataContainer()CDataContainerprivate
CDataContainer(const CDataContainer &src)CDataContainerprotected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)CDataContainer
CDataObject()CDataObjectprotected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataObjectprotected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)CDataObject
CILDMModifiedMethod()CILDMModifiedMethodprivate
CILDMModifiedMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::tssILDMModified, const CTaskEnum::Task &taskType=CTaskEnum::Task::tssAnalysis)CILDMModifiedMethod
CILDMModifiedMethod(const CILDMModifiedMethod &src, const CDataContainer *pParent)CILDMModifiedMethod
clear()CCopasiParameterGroup
clearCallBack()CCopasiMethodvirtual
CObjectInterface()CObjectInterface
CObjectInterface(const CObjectInterface &src)CObjectInterface
const_name_iterator typedefCCopasiParameterGroup
Container enum valueCDataObject
ContainerList typedefCObjectInterface
createAnnotationsM()CILDMModifiedMethodvirtual
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) constCCopasiParameterGroupvirtual
createValue()CCopasiParameterprivate
CTSSAMethod()CTSSAMethodprivate
CTSSAMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType=CTaskEnum::Task::tssAnalysis)CTSSAMethod
CTSSAMethod(const CTSSAMethod &src, const CDataContainer *pParent)CTSSAMethod
CUndoObjectInterface()CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)CUndoObjectInterface
DataModel enum valueCDataObject
DataObject(const CObjectInterface *pInterface)CObjectInterfacestatic
DataObjectSet typedefCDataObject
deleteValidValues(const Type &type, void *&pValidValues)CCopasiParameterstatic
deleteValue(const Type &type, void *&pValue)CCopasiParameterstatic
destruct() overrideCDataObjectvirtual
deuflhard_metab(C_INT &slow, C_INT &info)CILDMModifiedMethodprotected
DisplayName enum valueCDataObject
elements typedefCCopasiParameterGroup
elevateChildren()CTSSAMethodprotectedvirtual
EmptyListCDataContainerstatic
emptyVectors()CILDMModifiedMethod
endIndex() constCCopasiParameterGroup
endName() constCCopasiParameterGroup
eUserInterfaceFlag enum nameCCopasiParameter
evalsort(C_FLOAT64 *reval, C_INT *index, const C_INT &dim_x)CILDMModifiedMethodprotected
Flag enum nameCDataObject
fromData(const CData &data, CUndoObjectInterface *pParent)CCopasiParameterstatic
generateUuid()CUndoObjectInterface
getCallBack() constCCopasiMethod
getChildObjectUnits(const CDataObject *pObject) constCDataContainervirtual
getCN() const overrideCCopasiParametervirtual
getCurrentStep() constCTSSAMethod
getDataObject() const overrideCDataObjectvirtual
getDefault() constCCopasiParameterinline
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) constCDataContainer
getElementTemplates()CCopasiParameterGroup
getElementTemplates() constCCopasiParameterGroup
getGroup(const std::string &name)CCopasiParameterGroup
getGroup(const std::string &name) constCCopasiParameterGroup
getGroup(const size_t &index)CCopasiParameterGroup
getGroup(const size_t &index) constCCopasiParameterGroup
getIndex(const CDataObject *pObject) constCCopasiParameterGroupvirtual
getIndex(const std::string &name) constCCopasiParameterGroup
getKey(const std::string &name) constCCopasiParameterGroup
getKey(const size_t &index) constCCopasiParameterGroup
CCopasiParameter::getKey() const overrideCCopasiParametervirtual
getMathContainer() constCCopasiMethod
getName(const size_t &index) constCCopasiParameterGroupvirtual
getObject(const CCommonName &cn) constCCopasiParameterGroupvirtual
getObjectAncestor(const std::string &type) constCDataObject
getObjectDataModel() constCDataObject
getObjectDisplayName() const overrideCCopasiParametervirtual
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)CObjectInterfacestatic
getObjectFromCN(const CCommonName &cn) constCDataObject
getObjectName() constCDataObject
getObjectParent() constCDataObject
getObjects() constCDataContainervirtual
getObjects()CDataContainervirtual
getObjectType() constCDataObject
getParameter(std::string name)CCopasiParameterGroup
getParameter(std::string name) constCCopasiParameterGroup
getParameter(const size_t &index)CCopasiParameterGroup
getParameter(const size_t &index) constCCopasiParameterGroup
getPrerequisites() const overrideCDataObjectvirtual
getSubType() constCCopasiMethod
getTable(const std::string &name)CTSSAMethod
getTableNames() constCTSSAMethod
getTimeForStep(int step) constCTSSAMethod
getType() constCCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) constCCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) constCCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) constCCopasiParameterGroup
getUnits() const overrideCDataContainervirtual
getUserInterfaceFlag() constCCopasiParameter
getUuid() constCUndoObjectInterface
getValidity() const overrideCDataObjectvirtual
getValidValues() constCCopasiParameterinline
getValidValues()CCopasiParameterinline
getValidValuesPointer() constCCopasiParameter
getValue(const std::string &name) constCCopasiParameterGroupinline
getValue(const std::string &name)CCopasiParameterGroupinline
getValue(const size_t &index) constCCopasiParameterGroupinline
getValue(const size_t &index)CCopasiParameterGroupinline
CCopasiParameter::getValue() constCCopasiParameterinline
CCopasiParameter::getValue()CCopasiParameterinline
getValueObject() const overrideCDataContainervirtual
getValuePointer() const overrideCCopasiParametervirtual
getValueReference() constCCopasiParameter
getVec_TimeScale(int step)CTSSAMethod
getVfastSpacePrintAnn() constCILDMModifiedMethod
getVslowMetabPrintAnn() constCILDMModifiedMethod
getVslowPrintAnn() constCILDMModifiedMethod
getVslowSpacePrintAnn() constCILDMModifiedMethod
Gui enum valueCDataObject
hasFlag(const Flag &flag) constCDataObject
hasValidValues() constCCopasiParameter
haveTemplate() constCCopasiParameterGroup
index_iterator typedefCCopasiParameterGroup
initializeOutput()CILDMModifiedMethodvirtual
initializeParameter()CILDMModifiedMethodvirtual
initObjects()CDataContainerprotected
insert(const CData &data)CCopasiParameterGroupvirtual
integrationMethodStart()CTSSAMethodprotected
integrationStep(const double &deltaT)CTSSAMethodprotected
inValidValues(const CType &value) constCCopasiParameterinlineprivate
isBasic() constCCopasiParameter
isDefault() constCCopasiParameter
isEditable() constCCopasiParameter
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const overrideCDataObjectvirtual
isUnsupported() constCCopasiParameter
isValidProblem(const CCopasiProblem *pProblem)CTSSAMethodvirtual
isValidValue(const C_FLOAT64 &value) constCCopasiParameter
isValidValue(const C_INT32 &value) constCCopasiParameter
isValidValue(const unsigned C_INT32 &value) constCCopasiParameter
isValidValue(const bool &value) constCCopasiParameter
isValidValue(const std::string &value) constCCopasiParameter
isValidValue(const CCommonName &value) constCCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) constCCopasiParameter
isValidValue(const CType &) constCCopasiParameterinline
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)CCopasiMethodvirtual
mAggregateValidityCDataObjectprivate
map_index(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim)CTSSAMethodprotected
map_index_desc(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim)CTSSAMethodprotected
mapTableToNameCTSSAMethodprotected
mat_anal_fast_space(C_INT &slow)CTSSAMethodprotected
mat_anal_fast_space_thomas(C_INT &slow)CTSSAMethodprotected
mat_anal_metab(C_INT &slow)CTSSAMethodprotected
mat_anal_mod(C_INT &slow)CTSSAMethodprotected
mat_anal_mod_space(C_INT &slow)CTSSAMethodprotected
Matrix enum valueCDataObject
mCfastCTSSAMethodprotected
mConcentration2NumberCTSSAMethodprotected
mContainerStateCTSSAMethodprotected
mCurrentStepCTSSAMethodprotected
mCurrentTimeCTSSAMethodprotected
mDimCTSSAMethodprotected
mDtolCTSSAMethodprotected
mEPSCTSSAMethodprotected
mJacobianCTSSAMethodprotected
mJacobian_initialCTSSAMethodprotected
mKeyCCopasiParameterprotected
mNumber2ConcentrationCTSSAMethodprotected
mObjectDisplayNameCDataObjectmutableprivate
mObjectFlagCDataObjectprivate
mObjectNameCDataObjectprivate
mObjectsCDataContainerprotected
mObjectTypeCDataObjectprivate
ModelEntity enum valueCDataObject
mpContainerCCopasiMethodprotected
mpContainerStateTimeCTSSAMethodprotected
mpDefaultCCopasiParameterprotected
mpElementTemplatesCCopasiParameterGroupprivate
mpFirstSpeciesCTSSAMethodprotected
mpFirstSpeciesRateCTSSAMethodprotected
mpLsodaMethodCTSSAMethodprotected
mpObjectDisplayNameCDataObjectmutableprivate
mpObjectNameCDataObjectmutableprivate
mpObjectParentCDataObjectprivate
mpProblemCTSSAMethodprotected
mPrerequisitsCDataObjectprotected
mProcessReportCCopasiMethodprotected
mpUuidCUndoObjectInterfaceprivate
mpValidValuesCCopasiParameterprotected
mpValueCCopasiParameterprotected
mpValueReferenceCCopasiParametermutableprotected
mQCTSSAMethodprotected
mQ_descCTSSAMethodprotected
mQzCTSSAMethodprotected
mRCTSSAMethodprotected
mR_descCTSSAMethodprotected
mReferencedValiditiesCDataObjectprivate
mReferencesCDataObjectprotected
mSlowCTSSAMethodprotected
mSubTypeCCopasiMethodprivate
mTaskTypeCCopasiMethodprivate
mTdCTSSAMethodprotected
mTd_saveCTSSAMethodprotected
mTdInverseCTSSAMethodprotected
mTdInverse_saveCTSSAMethodprotected
mTypeCCopasiParameterprivate
mUserInterfaceFlagCCopasiParameterprotected
mUuidLockedCUndoObjectInterfaceprivate
mValidityCObjectInterfacemutableprotected
mVec_mVfastSpaceCILDMModifiedMethodprotected
mVec_mVslowCILDMModifiedMethodprotected
mVec_mVslowMetabCILDMModifiedMethodprotected
mVec_mVslowSpaceCILDMModifiedMethodprotected
mVec_SlowModesCTSSAMethodprotected
mVec_TimeScaleCTSSAMethodprotected
mVfast_spaceCTSSAMethodprotected
mVfastSpacePrintCILDMModifiedMethodprotected
mVslowCTSSAMethodprotected
mVslow_metabCTSSAMethodprotected
mVslow_spaceCTSSAMethodprotected
mVslowMetabPrintCILDMModifiedMethodprotected
mVslowPrintCILDMModifiedMethodprotected
mVslowSpacePrintCILDMModifiedMethodprotected
mY_consCTSSAMethodprotected
mY_initialCTSSAMethodprotected
name_iterator typedefCCopasiParameterGroup
NameVector enum valueCDataObject
newton_for_timestep(C_INT metabolite_number, C_FLOAT64 &y_consistent, C_INT &info)CILDMModifiedMethodprotected
newton_new(C_INT *index_metab, C_INT &slow, C_INT &info)CILDMModifiedMethodprotected
NonUniqueName enum valueCDataObject
objectMap typedefCDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)CDataContainer
ObjectSet typedefCObjectInterface
operator=(const CCopasiMethod &rhs)CCopasiMethod
CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs)CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)CCopasiParameter
orthog(C_INT &number1, C_INT &number2)CTSSAMethodprotected
prerequisitsContains(const DataObjectSet &objects) constCDataObject
print(std::ostream *ostream) constCCopasiMethodvirtual
printResult(std::ostream *ostream) constCILDMModifiedMethodvirtual
pTmp1CILDMModifiedMethodprotected
pTmp2CILDMModifiedMethodprotected
pTmp3CILDMModifiedMethodprotected
pTmp4CILDMModifiedMethodprotected
pVfastSpacePrintAnnCILDMModifiedMethodprotected
pVslowMetabPrintAnnCILDMModifiedMethodprotected
pVslowPrintAnnCILDMModifiedMethodprotected
pVslowSpacePrintAnnCILDMModifiedMethodprotected
Reference enum valueCDataObject
refreshAggregateValidity()CDataObjectprivate
remove(CDataObject *pObject)CCopasiParameterGroupvirtual
removeIssue(const CIssue &issue)CDataObject
removeParameter(const std::string &name)CCopasiParameterGroup
removeParameter(const size_t &index)CCopasiParameterGroup
removeParameter(CCopasiParameter *pParameter)CCopasiParameterGroup
removeReference(const CDataContainer *pReference)CDataObject
Root enum valueCDataObject
sanitizeObjectName(std::string &name)CDataObjectstatic
schur(C_INT &info)CTSSAMethodprotected
schur_desc(C_INT &info)CTSSAMethodprotected
Separator enum valueCDataObject
setAnnotationM(size_t step)CILDMModifiedMethodvirtual
setCallBack(CProcessReportLevel callBack)CCopasiMethodvirtual
setDefault(const CType &defaultValue)CCopasiParameterinline
setDefault(const std::vector< CCopasiParameter * > &defaultValue)CCopasiParameter
setMathContainer(CMathContainer *pContainer)CCopasiMethod
setObjectName(const std::string &name)CDataObject
setObjectParent(const CDataContainer *pParent) overrideCCopasiParametervirtual
setProblem(CTSSAProblem *problem)CTSSAMethod
setUserInterfaceFlag(const UserInterfaceFlag &flag)CCopasiParameterGroupvirtual
setUuid(const xg::Guid &uuid)CUndoObjectInterface
setUuid(const std::string &uuid)CUndoObjectInterface
setValidValues(const std::vector< std::pair< CType, CType > > &validValues)CCopasiParameterinline
setValidValues(const CEnumAnnotation< CType, Enum > &validValues)CCopasiParameterinline
setValue(const std::string &name, const CType &value)CCopasiParameterGroupinline
setValue(const size_t &index, const CType &value)CCopasiParameterGroupinline
CCopasiParameter::setValue(const CType &value)CCopasiParameterinline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)CCopasiParameter
setVectors(int slowMode)CILDMModifiedMethod
signalMathContainerChanged()CCopasiMethodprotectedvirtual
size(const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) constCCopasiParameterGroup
start()CILDMModifiedMethodvirtual
StaticString enum valueCDataObject
step(const double &deltaT)CILDMModifiedMethodvirtual
swap(const size_t &iFrom, const size_t &iTo)CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)CCopasiParameterGroup
sylvester(C_INT slow, C_INT &info)CTSSAMethodprotected
tableNamesCTSSAMethodprotected
toData() constCCopasiParameterGroupvirtual
Type enum nameCCopasiParameter
TypeNameCCopasiParameterstatic
update_nid(C_INT *index, C_INT *nid, const C_INT &dim)CTSSAMethodprotected
update_pid(C_INT *index, C_INT *pid, const C_INT &dim)CTSSAMethodprotected
updateCurrentTime()CTSSAMethodprotectedvirtual
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)CCopasiParameterGroupvirtual
UserInterfaceFlag typedefCCopasiParameter
validityChanged(const CValidity &changedValidity) overrideCDataObjectvirtual
validityRemoved(const CValidity &changedValidity)CDataObject
ValueBool enum valueCDataObject
ValueDbl enum valueCDataObject
ValueInt enum valueCDataObject
ValueInt64 enum valueCDataObject
ValueString enum valueCDataObject
Vector enum valueCDataObject
XMLTypeCCopasiParameterstatic
~CCopasiMethod()CCopasiMethodvirtual
~CCopasiParameter()CCopasiParametervirtual
~CCopasiParameterGroup()CCopasiParameterGroupvirtual
~CDataContainer()CDataContainervirtual
~CDataObject()CDataObjectvirtual
~CILDMModifiedMethod()CILDMModifiedMethodvirtual
~CObjectInterface()CObjectInterfacevirtual
~CTSSAMethod()CTSSAMethodvirtual
~CUndoObjectInterface()CUndoObjectInterfacevirtual