CHybridNextReactionLSODAMethod Member List

This is the complete list of members for CHybridNextReactionLSODAMethod, including all inherited members.

__SIZE enum value	CDataObject
add(CDataObject *pObject, const bool &adopt=true)	CDataContainer	virtual
addGroup(const std::string &name)	CCopasiParameterGroup
addIssue(const CIssue &issue)	CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addParameter(const CCopasiParameter &parameter)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup	inline
addParameter(CCopasiParameter *pParameter)	CCopasiParameterGroup
addReference(const CDataContainer *pReference)	CDataObject
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
allocateValidValues(const Type &type, void *&pValidValues)	CCopasiParameter	static
allocateValue(const Type &type, void *&pValue)	CCopasiParameter	static
appendDeletedDependentData(CUndoData &undoData) const	CDataContainer	virtual
applyData(const CData &data, CUndoData::CChangeSet &changes)	CCopasiParameterGroup	virtual
Array enum value	CDataObject
assertGroup(const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup	inline
assignDefault(const void *pDefault)	CCopasiParameter	private
assignValidValues(const void *pValidValues)	CCopasiParameter	private
assignValue(const Type &type, void *&pValue, const void *pNewValue)	CCopasiParameter	static
assignValue(const void *pValue)	CCopasiParameter	private
beginIndex() const	CCopasiParameterGroup
beginName() const	CCopasiParameterGroup
calculateDerivative(CVectorCore< C_FLOAT64 > &deriv)	CHybridMethod	protected
calculateValue() override	CDataObject	virtual
CCopasiMethod()	CCopasiMethod	private
CCopasiMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType)	CCopasiMethod	protected
CCopasiMethod(const CCopasiMethod &src)	CCopasiMethod	protected
CCopasiMethod(const CCopasiMethod &src, const CDataContainer *pParent)	CCopasiMethod
CCopasiParameter(const CCopasiParameter &src)	CCopasiParameter	protected
CCopasiParameter()	CCopasiParameter	private
CCopasiParameter(const CCopasiParameter &src, const CDataContainer *pParent)	CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter")	CCopasiParameter
CCopasiParameterGroup()	CCopasiParameterGroup	protected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)	CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")	CCopasiParameterGroup
CDataContainer()	CDataContainer	private
CDataContainer(const CDataContainer &src)	CDataContainer	protected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)	CDataContainer
CDataObject()	CDataObject	protected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataObject	protected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)	CDataObject
checkModel(CModel *model)	CHybridMethod	protectedstatic
CHybridMethod()	CHybridMethod	private
CHybridMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::hybrid, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)	CHybridMethod
CHybridMethod(const CHybridMethod &src, const CDataContainer *pParent)	CHybridMethod
CHybridNextReactionLSODAMethod()	CHybridNextReactionLSODAMethod	private
CHybridNextReactionLSODAMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::hybridLSODA, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)	CHybridNextReactionLSODAMethod
CHybridNextReactionLSODAMethod(const CHybridNextReactionLSODAMethod &src, const CDataContainer *pParent)	CHybridNextReactionLSODAMethod
cleanup()	CHybridMethod	protected
clear()	CCopasiParameterGroup
clearCallBack()	CCopasiMethod	virtual
CObjectInterface()	CObjectInterface
CObjectInterface(const CObjectInterface &src)	CObjectInterface
const_name_iterator typedef	CCopasiParameterGroup
Container enum value	CDataObject
ContainerList typedef	CObjectInterface
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const	CCopasiParameterGroup	virtual
createValue()	CCopasiParameter	private
CTrajectoryMethod()	CTrajectoryMethod	private
CTrajectoryMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)	CTrajectoryMethod
CTrajectoryMethod(const CTrajectoryMethod &src, const CDataContainer *pParent)	CTrajectoryMethod
CUndoObjectInterface()	CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)	CUndoObjectInterface
DataModel enum value	CDataObject
DataObject(const CObjectInterface *pInterface)	CObjectInterface	static
DataObjectSet typedef	CDataObject
deleteValidValues(const Type &type, void *&pValidValues)	CCopasiParameter	static
deleteValue(const Type &type, void *&pValue)	CCopasiParameter	static
destruct() override	CDataObject	virtual
DisplayName enum value	CDataObject
doSingleStep(C_FLOAT64 currentTime, C_FLOAT64 endTime)	CHybridMethod	protected
elements typedef	CCopasiParameterGroup
elevateChildren()	CHybridMethod	virtual
EmptyList	CDataContainer	static
endIndex() const	CCopasiParameterGroup
endName() const	CCopasiParameterGroup
eUserInterfaceFlag enum name	CCopasiParameter
evalF(C_FLOAT64 *ydot)	CHybridNextReactionLSODAMethod
FAILURE enum value	CTrajectoryMethod
Flag enum name	CDataObject
fromData(const CData &data, CUndoObjectInterface *pParent)	CCopasiParameter	static
generateReactionTime(size_t rIndex)	CHybridMethod	protected
generateUuid()	CUndoObjectInterface
getCallBack() const	CCopasiMethod
getChildObjectUnits(const CDataObject *pObject) const	CDataContainer	virtual
getCN() const override	CCopasiParameter	virtual
getDataObject() const override	CDataObject	virtual
getDefault() const	CCopasiParameter	inline
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const	CDataContainer
getElementTemplates()	CCopasiParameterGroup
getElementTemplates() const	CCopasiParameterGroup
getGroup(const std::string &name)	CCopasiParameterGroup
getGroup(const std::string &name) const	CCopasiParameterGroup
getGroup(const size_t &index)	CCopasiParameterGroup
getGroup(const size_t &index) const	CCopasiParameterGroup
getIndex(const CDataObject *pObject) const	CCopasiParameterGroup	virtual
getIndex(const std::string &name) const	CCopasiParameterGroup
getKey(const std::string &name) const	CCopasiParameterGroup
getKey(const size_t &index) const	CCopasiParameterGroup
CCopasiParameter::getKey() const override	CCopasiParameter	virtual
getMathContainer() const	CCopasiMethod
getName(const size_t &index) const	CCopasiParameterGroup	virtual
getObject(const CCommonName &cn) const	CCopasiParameterGroup	virtual
getObjectAncestor(const std::string &type) const	CDataObject
getObjectDataModel() const	CDataObject
getObjectDisplayName() const override	CCopasiParameter	virtual
getObjectFromCN(const CCommonName &cn) const	CDataObject
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)	CObjectInterface	static
getObjectName() const	CDataObject
getObjectParent() const	CDataObject
getObjects() const	CDataContainer	virtual
getObjects()	CDataContainer	virtual
getObjectType() const	CDataObject
getParameter(std::string name)	CCopasiParameterGroup
getParameter(std::string name) const	CCopasiParameterGroup
getParameter(const size_t &index)	CCopasiParameterGroup
getParameter(const size_t &index) const	CCopasiParameterGroup
getPrerequisites() const override	CDataObject	virtual
getRoots() const	CTrajectoryMethod
getStochTimeAndIndex(C_FLOAT64 &ds, size_t &rIndex)	CHybridMethod	protected
getSubType() const	CCopasiMethod
getType() const	CCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) const	CCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) const	CCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) const	CCopasiParameterGroup
getUnits() const override	CDataContainer	virtual
getUserInterfaceFlag() const	CCopasiParameter
getUuid() const	CUndoObjectInterface
getValidity() const override	CDataObject	virtual
getValidValues() const	CCopasiParameter	inline
getValidValues()	CCopasiParameter	inline
getValidValuesPointer() const	CCopasiParameter
getValue(const std::string &name) const	CCopasiParameterGroup	inline
getValue(const std::string &name)	CCopasiParameterGroup	inline
getValue(const size_t &index) const	CCopasiParameterGroup	inline
getValue(const size_t &index)	CCopasiParameterGroup	inline
CCopasiParameter::getValue() const	CCopasiParameter	inline
CCopasiParameter::getValue()	CCopasiParameter	inline
getValueObject() const override	CDataContainer	virtual
getValuePointer() const override	CCopasiParameter	virtual
getValueReference() const	CCopasiParameter
Gui enum value	CDataObject
hasFlag(const Flag &flag) const	CDataObject
hasValidValues() const	CCopasiParameter
haveTemplate() const	CCopasiParameterGroup
HIGH enum value	CHybridMethod	protected
index_iterator typedef	CCopasiParameterGroup
initializeParameter()	CHybridNextReactionLSODAMethod	private
initObjects()	CDataContainer	protected
insert(const CData &data)	CCopasiParameterGroup	virtual
insertDeterministicReaction(size_t rIndex)	CHybridMethod	protected
integrateDeterministicPart(C_FLOAT64 ds)	CHybridNextReactionLSODAMethod	virtual
integrateReducedModel() const	CTrajectoryMethod
inValidValues(const CType &value) const	CCopasiParameter	inlineprivate
isBasic() const	CCopasiParameter
isDefault() const	CCopasiParameter
isEditable() const	CCopasiParameter
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override	CDataObject	virtual
isUnsupported() const	CCopasiParameter
isValidProblem(const CCopasiProblem *pProblem)	CHybridMethod	virtual
isValidValue(const C_FLOAT64 &value) const	CCopasiParameter
isValidValue(const C_INT32 &value) const	CCopasiParameter
isValidValue(const unsigned C_INT32 &value) const	CCopasiParameter
isValidValue(const bool &value) const	CCopasiParameter
isValidValue(const std::string &value) const	CCopasiParameter
isValidValue(const CCommonName &value) const	CCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) const	CCopasiParameter
isValidValue(const CType &) const	CCopasiParameter	inline
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)	CCopasiMethod	virtual
LOW enum value	CHybridMethod	protected
mAggregateValidity	CDataObject	private
mAmu	CHybridMethod	protected
mAmuOld	CHybridMethod	protected
Matrix enum value	CDataObject
mContainerState	CTrajectoryMethod	protected
mCurrentState	CHybridMethod	protected
mDG	CHybridMethod	protected
metabStatus enum name	CHybridMethod	protected
mFirstMetabIndex	CHybridMethod	protected
mFirstReactionFlag	CHybridMethod	protected
mKey	CCopasiParameter	protected
mLowerStochLimit	CHybridMethod	protected
mLSODA	CHybridNextReactionLSODAMethod	private
mMaxBalance	CHybridMethod	protected
mMaxIntBeforeStep	CHybridMethod	protected
mMaxSteps	CHybridMethod	protected
mMaxStepsReached	CHybridMethod	protected
mMetab2React	CHybridMethod	protected
mMetabFlags	CHybridMethod	protected
mNumVariableMetabs	CHybridMethod	protected
mObjectDisplayName	CDataObject	mutableprivate
mObjectFlag	CDataObject	private
mObjectName	CDataObject	private
mObjects	CDataContainer	protected
mObjectType	CDataObject	private
ModelEntity enum value	CDataObject
mPartitioningInterval	CHybridMethod	protected
mpContainer	CCopasiMethod	protected
mpContainerStateTime	CTrajectoryMethod	protected
mpDefault	CCopasiParameter	protected
mpElementTemplates	CCopasiParameterGroup	private
mpFirstMetabValue	CHybridMethod	protected
mpObjectDisplayName	CDataObject	mutableprivate
mpObjectName	CDataObject	mutableprivate
mpObjectParent	CDataObject	private
mpProblem	CTrajectoryMethod	protected
mPQ	CHybridMethod	protected
mpRandomGenerator	CHybridMethod	protected
mpReducedModel	CTrajectoryMethod	protected
mPrerequisits	CDataObject	protected
mProcessReport	CCopasiMethod	protected
mpTask	CTrajectoryMethod	protected
mpUuid	CUndoObjectInterface	private
mpValidValues	CCopasiParameter	protected
mpValue	CCopasiParameter	protected
mpValueReference	CCopasiParameter	mutableprotected
mRandomSeed	CHybridMethod	protected
mRateOffset	CHybridMethod	protected
mReactionFlags	CHybridMethod	protected
mReactions	CHybridMethod	protected
mReferencedValidities	CDataObject	private
mReferences	CDataObject	protected
mRootsFound	CTrajectoryMethod	protected
mSpeciesRates	CHybridMethod	protected
mStepsAfterPartitionSystem	CHybridMethod	protected
mSubType	CCopasiMethod	private
mTaskType	CCopasiMethod	private
mType	CCopasiParameter	private
mUpdateSequences	CHybridMethod	protected
mUpperStochLimit	CHybridMethod	protected
mUseRandomSeed	CHybridMethod	protected
mUserInterfaceFlag	CCopasiParameter	protected
mUuidLocked	CUndoObjectInterface	private
mValidity	CObjectInterface	mutableprotected
name_iterator typedef	CCopasiParameterGroup
NameVector enum value	CDataObject
NonUniqueName enum value	CDataObject
NORMAL enum value	CTrajectoryMethod
objectMap typedef	CDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)	CDataContainer
ObjectSet typedef	CObjectInterface
operator=(const CCopasiMethod &rhs)	CCopasiMethod
CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs)	CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)	CCopasiParameter
output(const bool &useMoieties)	CTrajectoryMethod	protected
partitionSystem()	CHybridMethod	protected
prerequisitsContains(const DataObjectSet &objects) const	CDataObject
print(std::ostream *ostream) const	CCopasiMethod	virtual
printResult(std::ostream *ostream) const	CCopasiMethod	virtual
ReducedModel	CTrajectoryMethod	protectedstatic
Reference enum value	CDataObject
refreshAggregateValidity()	CDataObject	private
remove(CDataObject *pObject)	CCopasiParameterGroup	virtual
removeDeterministicReaction(size_t rIndex)	CHybridMethod	protected
removeIssue(const CIssue &issue)	CDataObject
removeParameter(const std::string &name)	CCopasiParameterGroup
removeParameter(const size_t &index)	CCopasiParameterGroup
removeParameter(CCopasiParameter *pParameter)	CCopasiParameterGroup
removeReference(const CDataContainer *pReference)	CDataObject
ROOT enum value	CTrajectoryMethod
Root enum value	CDataObject
sanitizeObjectName(std::string &name)	CDataObject	static
Separator enum value	CDataObject
setCallBack(CProcessReportLevel callBack)	CCopasiMethod	virtual
setDefault(const CType &defaultValue)	CCopasiParameter	inline
setDefault(const std::vector< CCopasiParameter * > &defaultValue)	CCopasiParameter
setMathContainer(CMathContainer *pContainer)	CCopasiMethod
setObjectName(const std::string &name)	CDataObject
setObjectParent(const CDataContainer *pParent) override	CCopasiParameter	virtual
setProblem(CTrajectoryProblem *problem)	CTrajectoryMethod
setupDependencyGraph()	CHybridMethod	protected
setupMetab2React()	CHybridMethod	protected
setupPartition()	CHybridMethod	protected
setupPriorityQueue()	CHybridMethod	protected
setUserInterfaceFlag(const UserInterfaceFlag &flag)	CCopasiParameterGroup	virtual
setUuid(const xg::Guid &uuid)	CUndoObjectInterface
setUuid(const std::string &uuid)	CUndoObjectInterface
setValidValues(const std::vector< std::pair< CType, CType > > &validValues)	CCopasiParameter	inline
setValidValues(const CEnumAnnotation< CType, Enum > &validValues)	CCopasiParameter	inline
setValue(const std::string &name, const CType &value)	CCopasiParameterGroup	inline
setValue(const size_t &index, const CType &value)	CCopasiParameterGroup	inline
CCopasiParameter::setValue(const CType &value)	CCopasiParameter	inline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)	CCopasiParameter
signalMathContainerChanged()	CTrajectoryMethod	protectedvirtual
size(const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const	CCopasiParameterGroup
start()	CHybridNextReactionLSODAMethod	virtual
stateChange(const CMath::StateChange &change)	CHybridNextReactionLSODAMethod	virtual
StaticString enum value	CDataObject
Status enum name	CTrajectoryMethod
step(const double &deltaT, const bool &final=false)	CHybridMethod	virtual
swap(const size_t &iFrom, const size_t &iTo)	CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)	CCopasiParameterGroup
toData() const	CCopasiParameterGroup	virtual
Type enum name	CCopasiParameter
TypeName	CCopasiParameter	static
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)	CCopasiParameterGroup	virtual
updatePriorityQueue(size_t rIndex, C_FLOAT64 time)	CHybridMethod	protected
updateTauMu(size_t rIndex, C_FLOAT64 time)	CHybridMethod	protected
UserInterfaceFlag typedef	CCopasiParameter
validityChanged(const CValidity &changedValidity) override	CDataObject	virtual
validityRemoved(const CValidity &changedValidity)	CDataObject
ValueBool enum value	CDataObject
ValueDbl enum value	CDataObject
ValueInt enum value	CDataObject
ValueInt64 enum value	CDataObject
ValueString enum value	CDataObject
Vector enum value	CDataObject
XMLType	CCopasiParameter	static
~CCopasiMethod()	CCopasiMethod	virtual
~CCopasiParameter()	CCopasiParameter	virtual
~CCopasiParameterGroup()	CCopasiParameterGroup	virtual
~CDataContainer()	CDataContainer	virtual
~CDataObject()	CDataObject	virtual
~CHybridMethod()	CHybridMethod
~CObjectInterface()	CObjectInterface	virtual
~CTrajectoryMethod()	CTrajectoryMethod
~CUndoObjectInterface()	CUndoObjectInterface	virtual