Showing:

Annotations
Attributes
Diagrams
Facets
Instances
Model
Properties
Source
Used by
Main schema CopasiML.xsd
Namespace http://www.copasi.org/static/schema
Properties
attribute form default unqualified
element form default qualified
Element schema:COPASI
Namespace http://www.copasi.org/static/schema
Annotations
 
This is the only top element of a CopasiML file. It contains the models as
well as the task information.
Diagram
Diagram CopasiML_xsd.tmp#COPASI_versionMajor CopasiML_xsd.tmp#COPASI_versionMinor CopasiML_xsd.tmp#COPASI_versionDevel CopasiML_xsd.tmp#COPASI_copasiSourcesModified CopasiML_xsd.tmp#ListOfFunctions CopasiML_xsd.tmp#Model CopasiML_xsd.tmp#ListOfTasks CopasiML_xsd.tmp#ListOfReports CopasiML_xsd.tmp#ListOfPlots CopasiML_xsd.tmp#GUI CopasiML_xsd.tmp#ListOfLayouts CopasiML_xsd.tmp#SBMLReference CopasiML_xsd.tmp#ListOfUnitDefinitions
Properties
content complex
Model
Children schema:GUI, schema:ListOfFunctions, schema:ListOfLayouts, schema:ListOfPlots, schema:ListOfReports, schema:ListOfTasks, schema:ListOfUnitDefinitions, schema:Model, schema:SBMLReference
Instance
 
<schema:COPASI copasiSourcesModified="" versionDevel="" versionMajor="" versionMinor="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ListOfFunctions>{0,1}</schema:ListOfFunctions>
  <schema:Model areaUnit="" avogadroConstant="" key="" lengthUnit="" name="" quantityUnit="" simulationType="" timeUnit="" type="" volumeUnit="">{0,1}</schema:Model>
  <schema:ListOfTasks>{0,1}</schema:ListOfTasks>
  <schema:ListOfReports>{0,1}</schema:ListOfReports>
  <schema:ListOfPlots>{0,1}</schema:ListOfPlots>
  <schema:GUI>{0,1}</schema:GUI>
  <schema:ListOfLayouts>{0,1}</schema:ListOfLayouts>
  <schema:SBMLReference file="">{0,1}</schema:SBMLReference>
  <schema:ListOfUnitDefinitions>{0,1}</schema:ListOfUnitDefinitions>
</schema:COPASI>
Attributes
QName Type Use
copasiSourcesModified xs:boolean required
versionDevel xs:integer required
versionMajor xs:integer required
versionMinor xs:integer required
Wildcard: ANY attribute from ANY namespace OTHER than 'http://www.copasi.org/static/schema'
Source
 
<xs:element name="COPASI">
  <xs:annotation>
    <xs:documentation>This is the only top element of a CopasiML file. It contains the models as well as the task information.</xs:documentation>
  </xs:annotation>
  <xs:complexType>
    <xs:sequence>
      <xs:element minOccurs="0" ref="schema:ListOfFunctions"/>
      <xs:element minOccurs="0" ref="schema:Model"/>
      <xs:element minOccurs="0" ref="schema:ListOfTasks"/>
      <xs:element minOccurs="0" ref="schema:ListOfReports"/>
      <xs:element minOccurs="0" ref="schema:ListOfPlots"/>
      <xs:element minOccurs="0" ref="schema:GUI"/>
      <xs:element minOccurs="0" ref="schema:ListOfLayouts"/>
      <xs:element minOccurs="0" ref="schema:SBMLReference"/>
      <xs:element minOccurs="0" ref="schema:ListOfUnitDefinitions"/>
      <xs:any minOccurs="0" maxOccurs="unbounded" namespace="##other" processContents="skip">
        <xs:annotation>
          <xs:documentation>We explicitedly allow the addition of elements which are not in the CopasiML name space so that this may be expandend by other user to suit their needs.</xs:documentation>
        </xs:annotation>
      </xs:any>
    </xs:sequence>
    <xs:attribute name="versionMajor" use="required" type="xs:integer"/>
    <xs:attribute name="versionMinor" use="required" type="xs:integer"/>
    <xs:attribute name="versionDevel" use="required" type="xs:integer"/>
    <xs:attribute name="copasiSourcesModified" use="required" type="xs:boolean"/>
    <xs:anyAttribute namespace="##other" processContents="skip"/>
  </xs:complexType>
</xs:element>
Element schema:ListOfFunctions
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Function CopasiML_xsd.tmp#listOfFunctions.datatype
Type schema:listOfFunctions.datatype
Properties
content complex
Used by
Element schema:COPASI
Model
Children schema:Function
Instance
 
<schema:ListOfFunctions xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Function key="" name="" reversible="" type="">{1,unbounded}</schema:Function>
</schema:ListOfFunctions>
Source
 
<xs:element name="ListOfFunctions" type="schema:listOfFunctions.datatype"/>
Element schema:Function
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#Function_key CopasiML_xsd.tmp#Function_type CopasiML_xsd.tmp#Function_reversible CopasiML_xsd.tmp#MiriamAnnotation CopasiML_xsd.tmp#Comment CopasiML_xsd.tmp#ListOfUnsupportedAnnotations CopasiML_xsd.tmp#annotation.datatype CopasiML_xsd.tmp#Expression CopasiML_xsd.tmp#ListOfParameterDescriptions
Properties
content complex
Used by
Model
Children schema:Comment, schema:Expression, schema:ListOfParameterDescriptions, schema:ListOfUnsupportedAnnotations, schema:MiriamAnnotation
Instance
 
<schema:Function key="" name="" reversible="" type="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:MiriamAnnotation>{0,1}</schema:MiriamAnnotation>
  <schema:Comment>{0,1}</schema:Comment>
  <schema:ListOfUnsupportedAnnotations>{0,1}</schema:ListOfUnsupportedAnnotations>
  <schema:Expression>{1,1}</schema:Expression>
  <schema:ListOfParameterDescriptions>{0,1}</schema:ListOfParameterDescriptions>
</schema:Function>
Attributes
QName Type Use
key restriction of xs:ID required
name restriction of xs:string required
reversible restriction of xs:string required
type restriction of xs:string required
Source
 
<xs:element name="Function">
  <xs:complexType>
    <xs:sequence>
      <xs:group ref="schema:annotation.datatype"/>
      <xs:element ref="schema:Expression"/>
      <xs:element minOccurs="0" ref="schema:ListOfParameterDescriptions"/>
    </xs:sequence>
    <xs:attributeGroup ref="schema:name.attribute"/>
    <xs:attribute name="key" use="required">
      <xs:simpleType>
        <xs:restriction base="xs:ID">
          <xs:pattern value="Function_\d+"/>
        </xs:restriction>
      </xs:simpleType>
    </xs:attribute>
    <xs:attribute name="type" use="required">
      <xs:simpleType>
        <xs:restriction base="xs:string">
          <xs:enumeration value="MassAction"/>
          <xs:enumeration value="PreDefined"/>
          <xs:enumeration value="UserDefined"/>
          <xs:enumeration value="Function"/>
          <xs:enumeration value="Expression"/>
        </xs:restriction>
      </xs:simpleType>
    </xs:attribute>
    <xs:attribute name="reversible" use="required">
      <xs:simpleType>
        <xs:restriction base="xs:string">
          <xs:enumeration value="unspecified"/>
          <xs:enumeration value="true"/>
          <xs:enumeration value="false"/>
        </xs:restriction>
      </xs:simpleType>
    </xs:attribute>
  </xs:complexType>
</xs:element>
Element schema:MiriamAnnotation
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#rdf.datatype
Type schema:rdf.datatype
Properties
content complex
Used by
Model
ANY element from namespace(s) 'http://www.w3.org/1999/02/22-rdf-syntax-ns#'
Source
 
<xs:element name="MiriamAnnotation" type="schema:rdf.datatype"/>
Element schema:Comment
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#xhtml.datatype
Properties
content complex
mixed true
Used by
Model
ANY element from namespace(s) 'http://www.w3.org/1999/xhtml'
Source
 
<xs:element name="Comment">
  <xs:complexType mixed="true">
    <xs:group minOccurs="0" ref="schema:xhtml.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:ListOfUnsupportedAnnotations
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#UnsupportedAnnotation CopasiML_xsd.tmp#listOfUnsupportedAnnotations.datatype
Type schema:listOfUnsupportedAnnotations.datatype
Properties
content complex
Used by
Model
Children schema:UnsupportedAnnotation
Instance
 
<schema:ListOfUnsupportedAnnotations xmlns:schema="http://www.copasi.org/static/schema">
  <schema:UnsupportedAnnotation name="">{1,unbounded}</schema:UnsupportedAnnotation>
</schema:ListOfUnsupportedAnnotations>
Source
 
<xs:element name="ListOfUnsupportedAnnotations" type="schema:listOfUnsupportedAnnotations.datatype"/>
Element schema:UnsupportedAnnotation
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#UnsupportedAnnotation.datatype CopasiML_xsd.tmp#UnsupportedAnnotation_name
Type extension of schema:UnsupportedAnnotation.datatype
Type hierarchy
Properties
content complex
Used by
Model
ANY element from ANY namespace OTHER than 'http://www.copasi.org/static/schema'
Attributes
QName Type Use
name required
Source
 
<xs:element name="UnsupportedAnnotation">
  <xs:complexType>
    <xs:complexContent>
      <xs:extension base="schema:UnsupportedAnnotation.datatype">
        <xs:attribute name="name" use="required"/>
      </xs:extension>
    </xs:complexContent>
  </xs:complexType>
</xs:element>
Element schema:Expression
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#expression.simpletype
Type schema:expression.simpletype
Properties
content simple
Used by
Source
 
<xs:element name="Expression" type="schema:expression.simpletype"/>
Element schema:ListOfParameterDescriptions
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ParameterDescription CopasiML_xsd.tmp#listOfParameterDescriptions.datatype
Type schema:listOfParameterDescriptions.datatype
Properties
content complex
Used by
Element schema:Function
Model
Children schema:ParameterDescription
Instance
 
<schema:ListOfParameterDescriptions xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ParameterDescription key="" name="" order="" role="">{1,unbounded}</schema:ParameterDescription>
</schema:ListOfParameterDescriptions>
Source
 
<xs:element name="ListOfParameterDescriptions" type="schema:listOfParameterDescriptions.datatype"/>
Element schema:ParameterDescription
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#parameterDescription.datatype
Properties
content complex
Used by
Attributes
QName Type Use
key restriction of xs:ID required
name restriction of xs:string required
order xs:nonNegativeInteger required
role restriction of xs:string required
Source
 
<xs:element name="ParameterDescription">
  <xs:complexType>
    <xs:attributeGroup ref="schema:parameterDescription.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:Model
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#model.datatype_key CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#model.datatype_simulationType CopasiML_xsd.tmp#model.datatype_timeUnit CopasiML_xsd.tmp#model.datatype_volumeUnit CopasiML_xsd.tmp#model.datatype_areaUnit CopasiML_xsd.tmp#model.datatype_lengthUnit CopasiML_xsd.tmp#model.datatype_quantityUnit CopasiML_xsd.tmp#model.datatype_type CopasiML_xsd.tmp#model.datatype_avogadroConstant CopasiML_xsd.tmp#MiriamAnnotation CopasiML_xsd.tmp#Comment CopasiML_xsd.tmp#ListOfUnsupportedAnnotations CopasiML_xsd.tmp#annotation.datatype CopasiML_xsd.tmp#InitialExpression CopasiML_xsd.tmp#ListOfCompartments CopasiML_xsd.tmp#ListOfMetabolites CopasiML_xsd.tmp#ListOfModelValues CopasiML_xsd.tmp#ListOfReactions CopasiML_xsd.tmp#ListOfEvents CopasiML_xsd.tmp#ListOfModelParameterSets CopasiML_xsd.tmp#StateTemplate CopasiML_xsd.tmp#InitialState CopasiML_xsd.tmp#model.datatype
Type schema:model.datatype
Properties
content complex
Used by
Element schema:COPASI
Model
Children schema:Comment, schema:InitialExpression, schema:InitialState, schema:ListOfCompartments, schema:ListOfEvents, schema:ListOfMetabolites, schema:ListOfModelParameterSets, schema:ListOfModelValues, schema:ListOfReactions, schema:ListOfUnsupportedAnnotations, schema:MiriamAnnotation, schema:StateTemplate
Instance
 
<schema:Model areaUnit="" avogadroConstant="" key="" lengthUnit="" name="" quantityUnit="" simulationType="" timeUnit="" type="" volumeUnit="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:MiriamAnnotation>{0,1}</schema:MiriamAnnotation>
  <schema:Comment>{0,1}</schema:Comment>
  <schema:ListOfUnsupportedAnnotations>{0,1}</schema:ListOfUnsupportedAnnotations>
  <schema:InitialExpression>{0,1}</schema:InitialExpression>
  <schema:ListOfCompartments>{0,1}</schema:ListOfCompartments>
  <schema:ListOfMetabolites>{0,1}</schema:ListOfMetabolites>
  <schema:ListOfModelValues>{0,1}</schema:ListOfModelValues>
  <schema:ListOfReactions>{0,1}</schema:ListOfReactions>
  <schema:ListOfEvents>{0,1}</schema:ListOfEvents>
  <schema:ListOfModelParameterSets activeSet="">{0,1}</schema:ListOfModelParameterSets>
  <schema:StateTemplate>{0,1}</schema:StateTemplate>
  <schema:InitialState type="">{0,1}</schema:InitialState>
</schema:Model>
Attributes
QName Type Use
areaUnit xs:string required
avogadroConstant xs:double required
key restriction of xs:ID required
lengthUnit xs:string required
name restriction of xs:string required
quantityUnit xs:string required
simulationType restriction of xs:string required
timeUnit xs:string required
type restriction of xs:string required
volumeUnit xs:string required
Source
 
<xs:element name="Model" type="schema:model.datatype"/>
Element schema:InitialExpression
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#expression.simpletype
Type schema:expression.simpletype
Properties
content simple
Used by
Source
 
<xs:element name="InitialExpression" type="schema:expression.simpletype"/>
Element schema:ListOfCompartments
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Compartment CopasiML_xsd.tmp#listOfCompartments.datatype
Type schema:listOfCompartments.datatype
Properties
content complex
Used by
Complex Type schema:model.datatype
Model
Children schema:Compartment
Instance
 
<schema:ListOfCompartments xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Compartment addNoise="" dimensionality="" key="" name="" simulationType="">{1,unbounded}</schema:Compartment>
</schema:ListOfCompartments>
Source
 
<xs:element name="ListOfCompartments" type="schema:listOfCompartments.datatype"/>
Element schema:Compartment
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#compartment.datatype_key CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#compartment.datatype_simulationType CopasiML_xsd.tmp#compartment.datatype_dimensionality CopasiML_xsd.tmp#compartment.datatype_addNoise CopasiML_xsd.tmp#MiriamAnnotation CopasiML_xsd.tmp#Comment CopasiML_xsd.tmp#ListOfUnsupportedAnnotations CopasiML_xsd.tmp#annotation.datatype CopasiML_xsd.tmp#Expression CopasiML_xsd.tmp#InitialExpression CopasiML_xsd.tmp#NoiseExpression CopasiML_xsd.tmp#compartment.datatype
Type schema:compartment.datatype
Properties
content complex
Used by
Model
Children schema:Comment, schema:Expression, schema:InitialExpression, schema:ListOfUnsupportedAnnotations, schema:MiriamAnnotation, schema:NoiseExpression
Instance
 
<schema:Compartment addNoise="" dimensionality="" key="" name="" simulationType="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:MiriamAnnotation>{0,1}</schema:MiriamAnnotation>
  <schema:Comment>{0,1}</schema:Comment>
  <schema:ListOfUnsupportedAnnotations>{0,1}</schema:ListOfUnsupportedAnnotations>
  <schema:Expression>{0,1}</schema:Expression>
  <schema:InitialExpression>{0,1}</schema:InitialExpression>
  <schema:NoiseExpression>{0,1}</schema:NoiseExpression>
</schema:Compartment>
Attributes
QName Type Use
addNoise xs:boolean required
dimensionality restriction of xs:int required
key restriction of xs:ID required
name restriction of xs:string required
simulationType restriction of xs:string required
Source
 
<xs:element name="Compartment" type="schema:compartment.datatype"/>
Element schema:NoiseExpression
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#expression.simpletype
Type schema:expression.simpletype
Properties
content simple
Used by
Source
 
<xs:element name="NoiseExpression" type="schema:expression.simpletype"/>
Element schema:ListOfMetabolites
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Metabolite CopasiML_xsd.tmp#listOfMetabolites.datatype
Type schema:listOfMetabolites.datatype
Properties
content complex
Used by
Complex Type schema:model.datatype
Model
Children schema:Metabolite
Instance
 
<schema:ListOfMetabolites xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Metabolite addNoise="" compartment="" key="" name="" simulationType="">{1,unbounded}</schema:Metabolite>
</schema:ListOfMetabolites>
Source
 
<xs:element name="ListOfMetabolites" type="schema:listOfMetabolites.datatype"/>
Element schema:Metabolite
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#metabolite.datatype_key CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#metabolite.datatype_compartment CopasiML_xsd.tmp#metabolite.datatype_simulationType CopasiML_xsd.tmp#metabolite.datatype_addNoise CopasiML_xsd.tmp#MiriamAnnotation CopasiML_xsd.tmp#Comment CopasiML_xsd.tmp#ListOfUnsupportedAnnotations CopasiML_xsd.tmp#annotation.datatype CopasiML_xsd.tmp#Expression CopasiML_xsd.tmp#InitialExpression CopasiML_xsd.tmp#NoiseExpression CopasiML_xsd.tmp#metabolite.datatype
Type schema:metabolite.datatype
Properties
content complex
Used by
Model
Children schema:Comment, schema:Expression, schema:InitialExpression, schema:ListOfUnsupportedAnnotations, schema:MiriamAnnotation, schema:NoiseExpression
Instance
 
<schema:Metabolite addNoise="" compartment="" key="" name="" simulationType="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:MiriamAnnotation>{0,1}</schema:MiriamAnnotation>
  <schema:Comment>{0,1}</schema:Comment>
  <schema:ListOfUnsupportedAnnotations>{0,1}</schema:ListOfUnsupportedAnnotations>
  <schema:Expression>{0,1}</schema:Expression>
  <schema:InitialExpression>{0,1}</schema:InitialExpression>
  <schema:NoiseExpression>{0,1}</schema:NoiseExpression>
</schema:Metabolite>
Attributes
QName Type Use
addNoise xs:boolean required
compartment restriction of xs:IDREF required
key restriction of xs:ID required
name restriction of xs:string required
simulationType restriction of xs:string required
Source
 
<xs:element name="Metabolite" type="schema:metabolite.datatype"/>
Element schema:ListOfModelValues
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ModelValue CopasiML_xsd.tmp#listOfModelValues.datatype
Type schema:listOfModelValues.datatype
Properties
content complex
Used by
Complex Type schema:model.datatype
Model
Children schema:ModelValue
Instance
 
<schema:ListOfModelValues xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ModelValue addNoise="" key="" name="" simulationType="">{1,unbounded}</schema:ModelValue>
</schema:ListOfModelValues>
Source
 
<xs:element name="ListOfModelValues" type="schema:listOfModelValues.datatype"/>
Element schema:ModelValue
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#modelValue.datatype_key CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#modelValue.datatype_simulationType CopasiML_xsd.tmp#modelValue.datatype_addNoise CopasiML_xsd.tmp#MiriamAnnotation CopasiML_xsd.tmp#Comment CopasiML_xsd.tmp#ListOfUnsupportedAnnotations CopasiML_xsd.tmp#annotation.datatype CopasiML_xsd.tmp#Expression CopasiML_xsd.tmp#InitialExpression CopasiML_xsd.tmp#NoiseExpression CopasiML_xsd.tmp#Unit CopasiML_xsd.tmp#modelValue.datatype
Type schema:modelValue.datatype
Properties
content complex
Used by
Model
Children schema:Comment, schema:Expression, schema:InitialExpression, schema:ListOfUnsupportedAnnotations, schema:MiriamAnnotation, schema:NoiseExpression, schema:Unit
Instance
 
<schema:ModelValue addNoise="" key="" name="" simulationType="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:MiriamAnnotation>{0,1}</schema:MiriamAnnotation>
  <schema:Comment>{0,1}</schema:Comment>
  <schema:ListOfUnsupportedAnnotations>{0,1}</schema:ListOfUnsupportedAnnotations>
  <schema:Expression>{0,1}</schema:Expression>
  <schema:InitialExpression>{0,1}</schema:InitialExpression>
  <schema:NoiseExpression>{0,1}</schema:NoiseExpression>
  <schema:Unit>{0,1}</schema:Unit>
</schema:ModelValue>
Attributes
QName Type Use
addNoise xs:boolean required
key restriction of xs:ID required
name restriction of xs:string required
simulationType restriction of xs:string required
Source
 
<xs:element name="ModelValue" type="schema:modelValue.datatype"/>
Element schema:Unit
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#expression.simpletype
Type schema:expression.simpletype
Properties
content simple
Used by
Source
 
<xs:element name="Unit" type="schema:expression.simpletype"/>
Element schema:ListOfReactions
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Reaction CopasiML_xsd.tmp#listOfReactions.datatype
Type schema:listOfReactions.datatype
Properties
content complex
Used by
Complex Type schema:model.datatype
Model
Children schema:Reaction
Instance
 
<schema:ListOfReactions xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Reaction addNoise="" fast="" key="" name="" reversible="">{1,unbounded}</schema:Reaction>
</schema:ListOfReactions>
Source
 
<xs:element name="ListOfReactions" type="schema:listOfReactions.datatype"/>
Element schema:Reaction
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#reaction.datatype_key CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#reaction.datatype_reversible CopasiML_xsd.tmp#reaction.datatype_fast CopasiML_xsd.tmp#reaction.datatype_addNoise CopasiML_xsd.tmp#MiriamAnnotation CopasiML_xsd.tmp#Comment CopasiML_xsd.tmp#ListOfUnsupportedAnnotations CopasiML_xsd.tmp#annotation.datatype CopasiML_xsd.tmp#ListOfSubstrates CopasiML_xsd.tmp#ListOfProducts CopasiML_xsd.tmp#ListOfModifiers CopasiML_xsd.tmp#ListOfConstants CopasiML_xsd.tmp#KineticLaw CopasiML_xsd.tmp#NoiseExpression CopasiML_xsd.tmp#reaction.datatype
Type schema:reaction.datatype
Properties
content complex
Used by
Model
Children schema:Comment, schema:KineticLaw, schema:ListOfConstants, schema:ListOfModifiers, schema:ListOfProducts, schema:ListOfSubstrates, schema:ListOfUnsupportedAnnotations, schema:MiriamAnnotation, schema:NoiseExpression
Instance
 
<schema:Reaction addNoise="" fast="" key="" name="" reversible="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:MiriamAnnotation>{0,1}</schema:MiriamAnnotation>
  <schema:Comment>{0,1}</schema:Comment>
  <schema:ListOfUnsupportedAnnotations>{0,1}</schema:ListOfUnsupportedAnnotations>
  <schema:ListOfSubstrates>{0,1}</schema:ListOfSubstrates>
  <schema:ListOfProducts>{0,1}</schema:ListOfProducts>
  <schema:ListOfModifiers>{0,1}</schema:ListOfModifiers>
  <schema:ListOfConstants>{0,1}</schema:ListOfConstants>
  <schema:KineticLaw function="" scalingCompartment="" unitType="">{0,1}</schema:KineticLaw>
  <schema:NoiseExpression>{0,1}</schema:NoiseExpression>
</schema:Reaction>
Attributes
QName Type Use
addNoise xs:boolean required
fast xs:boolean required
key restriction of xs:ID required
name restriction of xs:string required
reversible xs:boolean required
Source
 
<xs:element name="Reaction" type="schema:reaction.datatype"/>
Element schema:ListOfSubstrates
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Substrate
Properties
content complex
Used by
Model
Children schema:Substrate
Instance
 
<schema:ListOfSubstrates xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Substrate metabolite="" stoichiometry="">{1,unbounded}</schema:Substrate>
</schema:ListOfSubstrates>
Source
 
<xs:element name="ListOfSubstrates">
  <xs:complexType>
    <xs:sequence>
      <xs:element maxOccurs="unbounded" ref="schema:Substrate"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>
Element schema:Substrate
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#reactionParticipant.datatype
Properties
content complex
Used by
Attributes
QName Type Use
metabolite restriction of xs:IDREF required
stoichiometry xs:double required
Source
 
<xs:element name="Substrate">
  <xs:complexType>
    <xs:attributeGroup ref="schema:reactionParticipant.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:ListOfProducts
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Product
Properties
content complex
Used by
Model
Children schema:Product
Instance
 
<schema:ListOfProducts xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Product metabolite="" stoichiometry="">{1,unbounded}</schema:Product>
</schema:ListOfProducts>
Source
 
<xs:element name="ListOfProducts">
  <xs:complexType>
    <xs:sequence>
      <xs:element maxOccurs="unbounded" ref="schema:Product"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>
Element schema:Product
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#reactionParticipant.datatype
Properties
content complex
Used by
Attributes
QName Type Use
metabolite restriction of xs:IDREF required
stoichiometry xs:double required
Source
 
<xs:element name="Product">
  <xs:complexType>
    <xs:attributeGroup ref="schema:reactionParticipant.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:ListOfModifiers
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Modifier
Properties
content complex
Used by
Model
Children schema:Modifier
Instance
 
<schema:ListOfModifiers xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Modifier metabolite="" stoichiometry="">{1,unbounded}</schema:Modifier>
</schema:ListOfModifiers>
Source
 
<xs:element name="ListOfModifiers">
  <xs:complexType>
    <xs:sequence>
      <xs:element maxOccurs="unbounded" ref="schema:Modifier"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>
Element schema:Modifier
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#reactionParticipant.datatype
Properties
content complex
Used by
Attributes
QName Type Use
metabolite restriction of xs:IDREF required
stoichiometry xs:double required
Source
 
<xs:element name="Modifier">
  <xs:complexType>
    <xs:attributeGroup ref="schema:reactionParticipant.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:ListOfConstants
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Constant CopasiML_xsd.tmp#listOfConstants.datatype
Type schema:listOfConstants.datatype
Properties
content complex
Used by
Model
Children schema:Constant
Instance
 
<schema:ListOfConstants xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Constant key="" name="" value="">{1,unbounded}</schema:Constant>
</schema:ListOfConstants>
Source
 
<xs:element name="ListOfConstants" type="schema:listOfConstants.datatype"/>
Element schema:Constant
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#constant.datatype
Properties
content complex
Used by
Attributes
QName Type Use
key restriction of xs:ID required
name restriction of xs:string required
value xs:double required
Source
 
<xs:element name="Constant">
  <xs:complexType>
    <xs:attributeGroup ref="schema:constant.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:KineticLaw
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#kineticLaw.datatype_unitType CopasiML_xsd.tmp#kineticLaw.datatype_scalingCompartment CopasiML_xsd.tmp#kineticLaw.datatype_function CopasiML_xsd.tmp#ListOfCallParameters CopasiML_xsd.tmp#kineticLaw.datatype
Type schema:kineticLaw.datatype
Properties
content complex
Used by
Model
Children schema:ListOfCallParameters
Instance
 
<schema:KineticLaw function="" scalingCompartment="" unitType="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ListOfCallParameters>{0,1}</schema:ListOfCallParameters>
</schema:KineticLaw>
Attributes
QName Type Use
function restriction of xs:IDREF required
scalingCompartment restriction of xs:string optional
unitType restriction of xs:string required
Source
 
<xs:element name="KineticLaw" type="schema:kineticLaw.datatype"/>
Element schema:ListOfCallParameters
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#CallParameter CopasiML_xsd.tmp#listOfCallParameters.datatype
Type schema:listOfCallParameters.datatype
Properties
content complex
Used by
Model
Children schema:CallParameter
Instance
 
<schema:ListOfCallParameters xmlns:schema="http://www.copasi.org/static/schema">
  <schema:CallParameter functionParameter="">{1,unbounded}</schema:CallParameter>
</schema:ListOfCallParameters>
Source
 
<xs:element name="ListOfCallParameters" type="schema:listOfCallParameters.datatype"/>
Element schema:CallParameter
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#callParameter.datatype_functionParameter CopasiML_xsd.tmp#SourceParameter CopasiML_xsd.tmp#callParameter.datatype
Type schema:callParameter.datatype
Properties
content complex
Used by
Model
Children schema:SourceParameter
Instance
 
<schema:CallParameter functionParameter="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:SourceParameter reference="">{1,unbounded}</schema:SourceParameter>
</schema:CallParameter>
Attributes
QName Type Use
functionParameter restriction of xs:IDREF required
Source
 
<xs:element name="CallParameter" type="schema:callParameter.datatype"/>
Element schema:SourceParameter
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#SourceParameter_reference
Properties
content complex
Used by
Attributes
QName Type Use
reference restriction of xs:IDREF required
Source
 
<xs:element name="SourceParameter">
  <xs:complexType>
    <xs:attribute name="reference" use="required">
      <xs:simpleType>
        <xs:restriction base="xs:IDREF">
          <xs:pattern value="[_a-zA-Z]+_\d+"/>
        </xs:restriction>
      </xs:simpleType>
    </xs:attribute>
  </xs:complexType>
</xs:element>
Element schema:ListOfEvents
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Event CopasiML_xsd.tmp#listOfEvents.datatype
Type schema:listOfEvents.datatype
Properties
content complex
Used by
Complex Type schema:model.datatype
Model
Children schema:Event
Instance
 
<schema:ListOfEvents xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Event delayAssignment="" fireAtInitialTime="" key="" name="" persistentTrigger="">{1,unbounded}</schema:Event>
</schema:ListOfEvents>
Source
 
<xs:element name="ListOfEvents" type="schema:listOfEvents.datatype"/>
Element schema:Event
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#event.datatype_key CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#event.datatype_fireAtInitialTime CopasiML_xsd.tmp#event.datatype_persistentTrigger CopasiML_xsd.tmp#event.datatype_delayAssignment CopasiML_xsd.tmp#MiriamAnnotation CopasiML_xsd.tmp#Comment CopasiML_xsd.tmp#ListOfUnsupportedAnnotations CopasiML_xsd.tmp#annotation.datatype CopasiML_xsd.tmp#TriggerExpression CopasiML_xsd.tmp#DelayExpression CopasiML_xsd.tmp#PriorityExpression CopasiML_xsd.tmp#ListOfAssignments CopasiML_xsd.tmp#event.datatype
Type schema:event.datatype
Properties
content complex
Used by
Model
Children schema:Comment, schema:DelayExpression, schema:ListOfAssignments, schema:ListOfUnsupportedAnnotations, schema:MiriamAnnotation, schema:PriorityExpression, schema:TriggerExpression
Instance
 
<schema:Event delayAssignment="" fireAtInitialTime="" key="" name="" persistentTrigger="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:MiriamAnnotation>{0,1}</schema:MiriamAnnotation>
  <schema:Comment>{0,1}</schema:Comment>
  <schema:ListOfUnsupportedAnnotations>{0,1}</schema:ListOfUnsupportedAnnotations>
  <schema:TriggerExpression>{1,1}</schema:TriggerExpression>
  <schema:DelayExpression>{0,1}</schema:DelayExpression>
  <schema:PriorityExpression>{0,1}</schema:PriorityExpression>
  <schema:ListOfAssignments>{0,1}</schema:ListOfAssignments>
</schema:Event>
Attributes
QName Type Use
delayAssignment xs:boolean optional
fireAtInitialTime xs:boolean required
key restriction of xs:ID required
name restriction of xs:string required
persistentTrigger xs:boolean required
Source
 
<xs:element name="Event" type="schema:event.datatype"/>
Element schema:TriggerExpression
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#expression.simpletype
Type schema:expression.simpletype
Properties
content simple
Used by
Complex Type schema:event.datatype
Source
 
<xs:element name="TriggerExpression" type="schema:expression.simpletype"/>
Element schema:DelayExpression
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#expression.simpletype
Type schema:expression.simpletype
Properties
content simple
Used by
Complex Type schema:event.datatype
Source
 
<xs:element name="DelayExpression" type="schema:expression.simpletype"/>
Element schema:PriorityExpression
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#expression.simpletype
Type schema:expression.simpletype
Properties
content simple
Used by
Complex Type schema:event.datatype
Source
 
<xs:element name="PriorityExpression" type="schema:expression.simpletype"/>
Element schema:ListOfAssignments
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Assignment CopasiML_xsd.tmp#listOfEventAssignments.datatype
Type schema:listOfEventAssignments.datatype
Properties
content complex
Used by
Complex Type schema:event.datatype
Model
Children schema:Assignment
Instance
 
<schema:ListOfAssignments xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Assignment targetKey="">{1,unbounded}</schema:Assignment>
</schema:ListOfAssignments>
Source
 
<xs:element name="ListOfAssignments" type="schema:listOfEventAssignments.datatype"/>
Element schema:Assignment
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Assignment_targetKey CopasiML_xsd.tmp#Expression
Properties
content complex
Used by
Model
Children schema:Expression
Instance
 
<schema:Assignment targetKey="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Expression>{1,1}</schema:Expression>
</schema:Assignment>
Attributes
QName Type Use
targetKey restriction of xs:IDREF required
Source
 
<xs:element name="Assignment">
  <xs:complexType>
    <xs:sequence>
      <xs:element ref="schema:Expression"/>
    </xs:sequence>
    <xs:attribute name="targetKey" use="required">
      <xs:simpleType>
        <xs:restriction base="xs:IDREF">
          <xs:pattern value="(Metabolite|Compartment|ModelValue)_\d+"/>
        </xs:restriction>
      </xs:simpleType>
    </xs:attribute>
  </xs:complexType>
</xs:element>
Element schema:ListOfModelParameterSets
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#listOfModelParameterSets.datatype_activeSet CopasiML_xsd.tmp#ModelParameterSet CopasiML_xsd.tmp#listOfModelParameterSets.datatype
Type schema:listOfModelParameterSets.datatype
Properties
content complex
Used by
Complex Type schema:model.datatype
Model
Children schema:ModelParameterSet
Instance
 
<schema:ListOfModelParameterSets activeSet="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ModelParameterSet key="" name="">{1,unbounded}</schema:ModelParameterSet>
</schema:ListOfModelParameterSets>
Attributes
QName Type Use
activeSet restriction of xs:IDREF required
Source
 
<xs:element name="ListOfModelParameterSets" type="schema:listOfModelParameterSets.datatype"/>
Element schema:ModelParameterSet
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#modelParameterSet.datatype_key CopasiML_xsd.tmp#MiriamAnnotation CopasiML_xsd.tmp#Comment CopasiML_xsd.tmp#ListOfUnsupportedAnnotations CopasiML_xsd.tmp#annotation.datatype CopasiML_xsd.tmp#ModelParameterGroup CopasiML_xsd.tmp#ModelParameter CopasiML_xsd.tmp#modelParameterGroup.datatype CopasiML_xsd.tmp#modelParameterSet.datatype
Type schema:modelParameterSet.datatype
Properties
content complex
Used by
Model
Children schema:Comment, schema:ListOfUnsupportedAnnotations, schema:MiriamAnnotation, schema:ModelParameter, schema:ModelParameterGroup
Instance
 
<schema:ModelParameterSet key="" name="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:MiriamAnnotation>{0,1}</schema:MiriamAnnotation>
  <schema:Comment>{0,1}</schema:Comment>
  <schema:ListOfUnsupportedAnnotations>{0,1}</schema:ListOfUnsupportedAnnotations>
  <schema:ModelParameterGroup cn="" type="">{1,1}</schema:ModelParameterGroup>
  <schema:ModelParameter cn="" simulationType="" type="" value="">{1,1}</schema:ModelParameter>
</schema:ModelParameterSet>
Attributes
QName Type Use
key restriction of xs:ID required
name restriction of xs:string required
Source
 
<xs:element name="ModelParameterSet" type="schema:modelParameterSet.datatype"/>
Element schema:ModelParameterGroup
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ModelParameterGroup_cn CopasiML_xsd.tmp#ModelParameterGroup_type CopasiML_xsd.tmp#ModelParameterGroup CopasiML_xsd.tmp#ModelParameter CopasiML_xsd.tmp#modelParameterGroup.datatype
Properties
content complex
Used by
Model
Children schema:ModelParameter, schema:ModelParameterGroup
Instance
 
<schema:ModelParameterGroup cn="" type="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ModelParameterGroup cn="" type="">{1,1}</schema:ModelParameterGroup>
  <schema:ModelParameter cn="" simulationType="" type="" value="">{1,1}</schema:ModelParameter>
</schema:ModelParameterGroup>
Attributes
QName Type Use
cn xs:string required
type restriction of xs:string required
Source
 
<xs:element name="ModelParameterGroup">
  <xs:complexType>
    <xs:group ref="schema:modelParameterGroup.datatype"/>
    <xs:attribute name="cn" use="required" type="xs:string"/>
    <xs:attribute name="type" use="required">
      <xs:simpleType>
        <xs:restriction base="xs:string">
          <xs:enumeration value="Reaction"/>
          <xs:enumeration value="Group"/>
        </xs:restriction>
      </xs:simpleType>
    </xs:attribute>
  </xs:complexType>
</xs:element>
Element schema:ModelParameter
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#modelParameter.datatype_cn CopasiML_xsd.tmp#modelParameter.datatype_value CopasiML_xsd.tmp#modelParameter.datatype_type CopasiML_xsd.tmp#modelParameter.datatype_simulationType CopasiML_xsd.tmp#InitialExpression CopasiML_xsd.tmp#modelParameter.datatype
Type schema:modelParameter.datatype
Properties
content complex
Used by
Model
Children schema:InitialExpression
Instance
 
<schema:ModelParameter cn="" simulationType="" type="" value="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:InitialExpression>{0,1}</schema:InitialExpression>
</schema:ModelParameter>
Attributes
QName Type Use
cn xs:string required
simulationType restriction of xs:string required
type restriction of xs:string required
value xs:double required
Source
 
<xs:element name="ModelParameter" type="schema:modelParameter.datatype"/>
Element schema:StateTemplate
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#StateTemplateVariable
Properties
content complex
Used by
Complex Type schema:model.datatype
Model
Children schema:StateTemplateVariable
Instance
 
<schema:StateTemplate xmlns:schema="http://www.copasi.org/static/schema">
  <schema:StateTemplateVariable objectReference="">{0,unbounded}</schema:StateTemplateVariable>
</schema:StateTemplate>
Source
 
<xs:element name="StateTemplate">
  <xs:complexType>
    <xs:sequence>
      <xs:element minOccurs="0" maxOccurs="unbounded" ref="schema:StateTemplateVariable"/>
    </xs:sequence>
  </xs:complexType>
</xs:element>
Element schema:StateTemplateVariable
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#StateTemplateVariable_objectReference
Properties
content complex
Used by
Attributes
QName Type Use
objectReference restriction of xs:IDREF required
Source
 
<xs:element name="StateTemplateVariable">
  <xs:complexType>
    <xs:attribute name="objectReference" use="required">
      <xs:simpleType>
        <xs:restriction base="xs:IDREF">
          <xs:pattern value="(Model|Metabolite|Compartment|ModelValue)_\d+"/>
        </xs:restriction>
      </xs:simpleType>
    </xs:attribute>
  </xs:complexType>
</xs:element>
Element schema:InitialState
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#InitialState_type
Type restriction of xs:anyType
Properties
content complex
Used by
Complex Type schema:model.datatype
Attributes
QName Type Use
type xs:string required
Source
 
<xs:element name="InitialState">
  <xs:complexType>
    <xs:simpleContent>
      <xs:restriction base="xs:anyType">
        <xs:simpleType>
          <xs:list itemType="xs:double"/>
        </xs:simpleType>
        <xs:attribute name="type" use="required" type="xs:string"/>
      </xs:restriction>
    </xs:simpleContent>
  </xs:complexType>
</xs:element>
Element schema:ListOfTasks
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Task CopasiML_xsd.tmp#listOfTasks.datatype
Type schema:listOfTasks.datatype
Properties
content complex
Used by
Element schema:COPASI
Model
Children schema:Task
Instance
 
<schema:ListOfTasks xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Task key="" name="" scheduled="" type="" updateModel="">{1,unbounded}</schema:Task>
</schema:ListOfTasks>
Source
 
<xs:element name="ListOfTasks" type="schema:listOfTasks.datatype"/>
Element schema:Task
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#task.datatype_key CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#task.datatype_updateModel CopasiML_xsd.tmp#task.datatype_scheduled CopasiML_xsd.tmp#task.datatype_type CopasiML_xsd.tmp#task.datatype_Report CopasiML_xsd.tmp#Problem CopasiML_xsd.tmp#Method CopasiML_xsd.tmp#task.datatype
Type schema:task.datatype
Properties
content complex
Used by
Model
Children schema:Method, schema:Problem, schema:Report
Instance
 
<schema:Task key="" name="" scheduled="" type="" updateModel="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Report append="" confirmOverwrite="" reference="" target="">{0,1}</schema:Report>
  <schema:Problem>{1,1}</schema:Problem>
  <schema:Method name="" type="">{1,1}</schema:Method>
</schema:Task>
Attributes
QName Type Use
key restriction of xs:ID required
name restriction of xs:string required
scheduled xs:boolean required
type schema:taskTypeEnumeration.datatype required
updateModel xs:boolean required
Source
 
<xs:element name="Task" type="schema:task.datatype"/>
Element schema:task.datatype / schema:Report
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#report.datatype
Properties
content complex
minOccurs 0
Attributes
QName Type Use
append xs:boolean required
confirmOverwrite xs:boolean required
reference restriction of xs:IDREF required
target xs:string required
Source
 
<xs:element minOccurs="0" name="Report">
  <xs:complexType>
    <xs:attributeGroup ref="schema:report.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:Problem
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ParameterGroup CopasiML_xsd.tmp#Parameter CopasiML_xsd.tmp#ParameterText CopasiML_xsd.tmp#parameterList.datatype
Type schema:parameterList.datatype
Properties
content complex
Used by
Complex Type schema:task.datatype
Model
Children schema:Parameter, schema:ParameterGroup, schema:ParameterText
Instance
 
<schema:Problem xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ParameterGroup name="">{1,1}</schema:ParameterGroup>
  <schema:Parameter name="" type="" value="">{1,1}</schema:Parameter>
  <schema:ParameterText name="" type="">{1,1}</schema:ParameterText>
</schema:Problem>
Source
 
<xs:element name="Problem" type="schema:parameterList.datatype"/>
Element schema:ParameterGroup
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ParameterGroup CopasiML_xsd.tmp#Parameter CopasiML_xsd.tmp#ParameterText CopasiML_xsd.tmp#parameterList.datatype CopasiML_xsd.tmp#name.attribute
Type extension of schema:parameterList.datatype
Type hierarchy
Properties
content complex
Used by
Model
Children schema:Parameter, schema:ParameterGroup, schema:ParameterText
Instance
 
<schema:ParameterGroup name="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ParameterGroup name="">{1,1}</schema:ParameterGroup>
  <schema:Parameter name="" type="" value="">{1,1}</schema:Parameter>
  <schema:ParameterText name="" type="">{1,1}</schema:ParameterText>
</schema:ParameterGroup>
Attributes
QName Type Use
name restriction of xs:string required
Source
 
<xs:element name="ParameterGroup">
  <xs:complexType>
    <xs:complexContent>
      <xs:extension base="schema:parameterList.datatype">
        <xs:attributeGroup ref="schema:name.attribute"/>
      </xs:extension>
    </xs:complexContent>
  </xs:complexType>
</xs:element>
Element schema:Parameter
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#parameter.datatype
Properties
content complex
Used by
Attributes
QName Type Use
name restriction of xs:string required
type restriction of xs:string required
value xs:string required
Source
 
<xs:element name="Parameter">
  <xs:complexType>
    <xs:attributeGroup ref="schema:parameter.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:ParameterText
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#parameterText.datatype
Properties
content complex
mixed true
Used by
Model
Attributes
QName Type Use
name restriction of xs:string required
type restriction of xs:string required
Source
 
<xs:element name="ParameterText">
  <xs:complexType mixed="true">
    <xs:attributeGroup ref="schema:parameterText.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:Method
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ParameterGroup CopasiML_xsd.tmp#Parameter CopasiML_xsd.tmp#ParameterText CopasiML_xsd.tmp#parameterList.datatype CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#Method_type
Type extension of schema:parameterList.datatype
Type hierarchy
Properties
content complex
Used by
Complex Type schema:task.datatype
Model
Children schema:Parameter, schema:ParameterGroup, schema:ParameterText
Instance
 
<schema:Method name="" type="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ParameterGroup name="">{1,1}</schema:ParameterGroup>
  <schema:Parameter name="" type="" value="">{1,1}</schema:Parameter>
  <schema:ParameterText name="" type="">{1,1}</schema:ParameterText>
</schema:Method>
Attributes
QName Type Use
name restriction of xs:string required
type xs:string required
Source
 
<xs:element name="Method">
  <xs:complexType>
    <xs:complexContent>
      <xs:extension base="schema:parameterList.datatype">
        <xs:attributeGroup ref="schema:name.attribute"/>
        <xs:attribute name="type" use="required" type="xs:string"/>
      </xs:extension>
    </xs:complexContent>
  </xs:complexType>
</xs:element>
Element schema:ListOfReports
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#listOfReportSpecifications.datatype_Report CopasiML_xsd.tmp#listOfReportSpecifications.datatype
Type schema:listOfReportSpecifications.datatype
Properties
content complex
Used by
Element schema:COPASI
Model
Children schema:Report
Instance
 
<schema:ListOfReports xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Report key="" name="" precision="" separator="" taskType="">{1,unbounded}</schema:Report>
</schema:ListOfReports>
Source
 
<xs:element name="ListOfReports" type="schema:listOfReportSpecifications.datatype"/>
Element schema:listOfReportSpecifications.datatype / schema:Report
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#reportSpecification.datatype_key CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#reportSpecification.datatype_taskType CopasiML_xsd.tmp#reportSpecification.datatype_precision CopasiML_xsd.tmp#reportSpecification.datatype_separator CopasiML_xsd.tmp#Comment CopasiML_xsd.tmp#Table CopasiML_xsd.tmp#Header CopasiML_xsd.tmp#Body CopasiML_xsd.tmp#Footer CopasiML_xsd.tmp#reportSpecification.datatype
Type schema:reportSpecification.datatype
Properties
content complex
maxOccurs unbounded
Model
Children schema:Body, schema:Comment, schema:Footer, schema:Header, schema:Table
Instance
 
<schema:Report key="" name="" precision="" separator="" taskType="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Comment>{0,1}</schema:Comment>
  <schema:Table printTitle="">{1,1}</schema:Table>
  <schema:Header>{0,1}</schema:Header>
  <schema:Body>{0,1}</schema:Body>
  <schema:Footer>{0,1}</schema:Footer>
</schema:Report>
Attributes
QName Type Use
key restriction of xs:ID required
name restriction of xs:string required
precision xs:unsignedInt required
separator xs:string required
taskType schema:taskTypeEnumeration.datatype required
Source
 
<xs:element maxOccurs="unbounded" name="Report" type="schema:reportSpecification.datatype"/>
Element schema:Table
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Table_printTitle CopasiML_xsd.tmp#Object
Properties
content complex
Used by
Model
Children schema:Object
Instance
 
<schema:Table printTitle="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Object cn="">{0,unbounded}</schema:Object>
</schema:Table>
Attributes
QName Type Use
printTitle xs:boolean required
Source
 
<xs:element name="Table">
  <xs:complexType>
    <xs:sequence>
      <xs:element minOccurs="0" maxOccurs="unbounded" ref="schema:Object"/>
    </xs:sequence>
    <xs:attribute name="printTitle" use="required" type="xs:boolean"/>
  </xs:complexType>
</xs:element>
Element schema:Object
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Object_cn
Properties
content complex
Used by
Attributes
QName Type Use
cn xs:string required
Source
 
<xs:element name="Object">
  <xs:complexType>
    <xs:attribute name="cn" use="required" type="xs:string"/>
  </xs:complexType>
</xs:element>
Element schema:Header
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Object CopasiML_xsd.tmp#reportSection.datatype
Type schema:reportSection.datatype
Properties
content complex
Used by
Model
Children schema:Object
Instance
 
<schema:Header xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Object cn="">{1,unbounded}</schema:Object>
</schema:Header>
Source
 
<xs:element name="Header" type="schema:reportSection.datatype"/>
Element schema:Body
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Object CopasiML_xsd.tmp#reportSection.datatype
Type schema:reportSection.datatype
Properties
content complex
Used by
Complex Type schema:reportSpecification.datatype
Model
schema:Object+
Children schema:Object
Instance
 
<schema:Body xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Object cn="">{1,unbounded}</schema:Object>
</schema:Body>
Source
 
<xs:element name="Body" type="schema:reportSection.datatype"/>
Element schema:Footer
Namespace http://www.copasi.org/static/schema
Diagram
Type schema:reportSection.datatype
Properties
Used by
Model
Children schema:Object
Instance
Source
Element schema:ListOfPlots
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#PlotSpecification CopasiML_xsd.tmp#listOfPlotSpecifications.datatype
Type schema:listOfPlotSpecifications.datatype
Properties
content complex
Used by
Element schema:COPASI
Model
Children schema:PlotSpecification
Instance
 
<schema:ListOfPlots xmlns:schema="http://www.copasi.org/static/schema">
  <schema:PlotSpecification active="" name="" type="">{1,unbounded}</schema:PlotSpecification>
</schema:ListOfPlots>
Source
 
<xs:element name="ListOfPlots" type="schema:listOfPlotSpecifications.datatype"/>
Element schema:PlotSpecification
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ParameterGroup CopasiML_xsd.tmp#Parameter CopasiML_xsd.tmp#ParameterText CopasiML_xsd.tmp#parameterList.datatype CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#plotSpecification.datatype_type CopasiML_xsd.tmp#plotSpecification.datatype_active CopasiML_xsd.tmp#ListOfPlotItems CopasiML_xsd.tmp#plotSpecification.datatype
Type schema:plotSpecification.datatype
Type hierarchy
Properties
content complex
Used by
Model
Children schema:ListOfPlotItems, schema:Parameter, schema:ParameterGroup, schema:ParameterText
Instance
 
<schema:PlotSpecification active="" name="" type="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ParameterGroup name="">{1,1}</schema:ParameterGroup>
  <schema:Parameter name="" type="" value="">{1,1}</schema:Parameter>
  <schema:ParameterText name="" type="">{1,1}</schema:ParameterText>
  <schema:ListOfPlotItems>{1,1}</schema:ListOfPlotItems>
</schema:PlotSpecification>
Attributes
QName Type Use
active xs:boolean required
name restriction of xs:string required
type restriction of xs:string required
Source
 
<xs:element name="PlotSpecification" type="schema:plotSpecification.datatype"/>
Element schema:ListOfPlotItems
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#PlotItem CopasiML_xsd.tmp#listOfPlotItems.datatype
Type schema:listOfPlotItems.datatype
Properties
content complex
Used by
Model
Children schema:PlotItem
Instance
 
<schema:ListOfPlotItems xmlns:schema="http://www.copasi.org/static/schema">
  <schema:PlotItem name="" type="">{1,unbounded}</schema:PlotItem>
</schema:ListOfPlotItems>
Source
 
<xs:element name="ListOfPlotItems" type="schema:listOfPlotItems.datatype"/>
Element schema:PlotItem
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ParameterGroup CopasiML_xsd.tmp#Parameter CopasiML_xsd.tmp#ParameterText CopasiML_xsd.tmp#parameterList.datatype CopasiML_xsd.tmp#name.attribute CopasiML_xsd.tmp#plotItem.datatype_type CopasiML_xsd.tmp#ListOfChannels CopasiML_xsd.tmp#plotItem.datatype
Type schema:plotItem.datatype
Type hierarchy
Properties
content complex
Used by
Model
Children schema:ListOfChannels, schema:Parameter, schema:ParameterGroup, schema:ParameterText
Instance
 
<schema:PlotItem name="" type="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ParameterGroup name="">{1,1}</schema:ParameterGroup>
  <schema:Parameter name="" type="" value="">{1,1}</schema:Parameter>
  <schema:ParameterText name="" type="">{1,1}</schema:ParameterText>
  <schema:ListOfChannels>{1,1}</schema:ListOfChannels>
</schema:PlotItem>
Attributes
QName Type Use
name restriction of xs:string required
type restriction of xs:string required
Source
 
<xs:element name="PlotItem" type="schema:plotItem.datatype"/>
Element schema:ListOfChannels
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ChannelSpec CopasiML_xsd.tmp#listOfChannels.datatype
Type schema:listOfChannels.datatype
Properties
content complex
Used by
Model
Children schema:ChannelSpec
Instance
 
<schema:ListOfChannels xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ChannelSpec cn="" max="" min="">{1,unbounded}</schema:ChannelSpec>
</schema:ListOfChannels>
Source
 
<xs:element name="ListOfChannels" type="schema:listOfChannels.datatype"/>
Element schema:ChannelSpec
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#channelSpec.datatype
Properties
content complex
Used by
Attributes
QName Type Use
cn xs:string required
max xs:double optional
min xs:double optional
Source
 
<xs:element name="ChannelSpec">
  <xs:complexType>
    <xs:attributeGroup ref="schema:channelSpec.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:GUI
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ListOfSliders CopasiML_xsd.tmp#gui.datatype
Type schema:gui.datatype
Properties
content complex
Used by
Element schema:COPASI
Model
Children schema:ListOfSliders
Instance
 
<schema:GUI xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ListOfSliders>{0,1}</schema:ListOfSliders>
</schema:GUI>
Source
 
<xs:element name="GUI" type="schema:gui.datatype"/>
Element schema:ListOfSliders
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Slider CopasiML_xsd.tmp#listOfSliders.datatype
Type schema:listOfSliders.datatype
Properties
content complex
Used by
Complex Type schema:gui.datatype
Model
Children schema:Slider
Instance
 
<schema:ListOfSliders xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Slider associatedEntityKey="" key="" maxValue="" minValue="" objectCN="" objectType="" objectValue="" scaling="" tickFactor="" tickNumber="">{1,unbounded}</schema:Slider>
</schema:ListOfSliders>
Source
 
<xs:element name="ListOfSliders" type="schema:listOfSliders.datatype"/>
Element schema:Slider
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#slider.datatype
Properties
content complex
Used by
Attributes
QName Type Use
associatedEntityKey restriction of xs:IDREF required
key restriction of xs:ID required
maxValue xs:double required
minValue xs:double required
objectCN xs:string required
objectType restriction of xs:string required
objectValue xs:double required
scaling restriction of xs:string required
tickFactor xs:positiveInteger required
tickNumber xs:positiveInteger required
Source
 
<xs:element name="Slider">
  <xs:complexType>
    <xs:attributeGroup ref="schema:slider.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:ListOfLayouts
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Layout CopasiML_xsd.tmp#ListOfGlobalRenderInformation CopasiML_xsd.tmp#listOfLayouts.datatype
Type schema:listOfLayouts.datatype
Properties
content complex
Used by
Element schema:COPASI
Model
Children schema:Layout, schema:ListOfGlobalRenderInformation
Instance
 
<schema:ListOfLayouts xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Layout key="" name="">{0,unbounded}</schema:Layout>
  <schema:ListOfGlobalRenderInformation>{0,1}</schema:ListOfGlobalRenderInformation>
</schema:ListOfLayouts>
Source
 
<xs:element name="ListOfLayouts" type="schema:listOfLayouts.datatype"/>
Element schema:Layout
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#layout.datatype_key CopasiML_xsd.tmp#layout.datatype_name CopasiML_xsd.tmp#layout.datatype_Dimensions CopasiML_xsd.tmp#ListOfCompartmentGlyphs CopasiML_xsd.tmp#ListOfMetabGlyphs CopasiML_xsd.tmp#ListOfReactionGlyphs CopasiML_xsd.tmp#ListOfTextGlyphs CopasiML_xsd.tmp#ListOfAdditionalGraphicalObjects CopasiML_xsd.tmp#ListOfRenderInformation CopasiML_xsd.tmp#layout.datatype
Type schema:layout.datatype
Properties
content complex
Used by
Model
Children schema:Dimensions, schema:ListOfAdditionalGraphicalObjects, schema:ListOfCompartmentGlyphs, schema:ListOfMetabGlyphs, schema:ListOfReactionGlyphs, schema:ListOfRenderInformation, schema:ListOfTextGlyphs
Instance
 
<schema:Layout key="" name="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Dimensions height="" width="">{1,1}</schema:Dimensions>
  <schema:ListOfCompartmentGlyphs>{0,1}</schema:ListOfCompartmentGlyphs>
  <schema:ListOfMetabGlyphs>{0,1}</schema:ListOfMetabGlyphs>
  <schema:ListOfReactionGlyphs>{0,1}</schema:ListOfReactionGlyphs>
  <schema:ListOfTextGlyphs>{0,1}</schema:ListOfTextGlyphs>
  <schema:ListOfAdditionalGraphicalObjects>{0,1}</schema:ListOfAdditionalGraphicalObjects>
  <schema:ListOfRenderInformation>{0,1}</schema:ListOfRenderInformation>
</schema:Layout>
Attributes
QName Type Use
key restriction of xs:ID required
name xs:string optional
Source
 
<xs:element name="Layout" type="schema:layout.datatype"/>
Element schema:layout.datatype / schema:Dimensions
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#dimension.datatype
Properties
content complex
Attributes
QName Type Use
height xs:double required
width xs:double required
Source
 
<xs:element name="Dimensions">
  <xs:complexType>
    <xs:attributeGroup ref="schema:dimension.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:ListOfCompartmentGlyphs
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#CompartmentGlyph CopasiML_xsd.tmp#listOfCompartmentGlyphs.datatype
Type schema:listOfCompartmentGlyphs.datatype
Properties
content complex
Used by
Complex Type schema:layout.datatype
Model
Children schema:CompartmentGlyph
Instance
 
<schema:ListOfCompartmentGlyphs xmlns:schema="http://www.copasi.org/static/schema">
  <schema:CompartmentGlyph compartment="" key="" name="">{0,unbounded}</schema:CompartmentGlyph>
</schema:ListOfCompartmentGlyphs>
Source
 
<xs:element name="ListOfCompartmentGlyphs" type="schema:listOfCompartmentGlyphs.datatype"/>
Element schema:CompartmentGlyph
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#glyph.datatype_key CopasiML_xsd.tmp#glyph.datatype_name CopasiML_xsd.tmp#BoundingBox CopasiML_xsd.tmp#glyph.datatype CopasiML_xsd.tmp#CompartmentGlyph_compartment
Type extension of schema:glyph.datatype
Type hierarchy
Properties
content complex
Used by
Model
Children schema:BoundingBox
Instance
 
<schema:CompartmentGlyph compartment="" key="" name="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:BoundingBox>{1,1}</schema:BoundingBox>
</schema:CompartmentGlyph>
Attributes
QName Type Use
compartment restriction of xs:IDREF optional
key restriction of xs:ID required
name xs:string optional
Source
 
<xs:element name="CompartmentGlyph">
  <xs:complexType>
    <xs:complexContent>
      <xs:extension base="schema:glyph.datatype">
        <xs:attribute name="compartment">
          <xs:simpleType>
            <xs:restriction base="xs:IDREF">
              <xs:pattern value="Compartment_\d+"/>
            </xs:restriction>
          </xs:simpleType>
        </xs:attribute>
      </xs:extension>
    </xs:complexContent>
  </xs:complexType>
</xs:element>
Element schema:BoundingBox
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Position CopasiML_xsd.tmp#boundingBox.datatype_Dimensions CopasiML_xsd.tmp#boundingBox.datatype
Type schema:boundingBox.datatype
Properties
content complex
Used by
Model
Children schema:Dimensions, schema:Position
Instance
 
<schema:BoundingBox xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Position x="" y="">{1,1}</schema:Position>
  <schema:Dimensions height="" width="">{1,1}</schema:Dimensions>
</schema:BoundingBox>
Source
 
<xs:element name="BoundingBox" type="schema:boundingBox.datatype"/>
Element schema:Position
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Position_x CopasiML_xsd.tmp#Position_y
Properties
content complex
Used by
Attributes
QName Type Use
x xs:double required
y xs:double required
Source
 
<xs:element name="Position">
  <xs:complexType>
    <xs:attribute name="x" use="required" type="xs:double"/>
    <xs:attribute name="y" use="required" type="xs:double"/>
  </xs:complexType>
</xs:element>
Element schema:boundingBox.datatype / schema:Dimensions
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#boundingBox.datatype_boundingBox.datatype_Dimensions_width CopasiML_xsd.tmp#boundingBox.datatype_boundingBox.datatype_Dimensions_height
Properties
content complex
Attributes
QName Type Use
height xs:double required
width xs:double required
Source
 
<xs:element name="Dimensions">
  <xs:complexType>
    <xs:attribute name="width" use="required" type="xs:double"/>
    <xs:attribute name="height" use="required" type="xs:double"/>
  </xs:complexType>
</xs:element>
Element schema:ListOfMetabGlyphs
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#MetaboliteGlyph CopasiML_xsd.tmp#listOfMetabGlyphs.datatype
Type schema:listOfMetabGlyphs.datatype
Properties
content complex
Used by
Complex Type schema:layout.datatype
Model
Children schema:MetaboliteGlyph
Instance
 
<schema:ListOfMetabGlyphs xmlns:schema="http://www.copasi.org/static/schema">
  <schema:MetaboliteGlyph key="" metabolite="" name="">{0,unbounded}</schema:MetaboliteGlyph>
</schema:ListOfMetabGlyphs>
Source
 
<xs:element name="ListOfMetabGlyphs" type="schema:listOfMetabGlyphs.datatype"/>
Element schema:MetaboliteGlyph
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#glyph.datatype_key CopasiML_xsd.tmp#glyph.datatype_name CopasiML_xsd.tmp#BoundingBox CopasiML_xsd.tmp#glyph.datatype CopasiML_xsd.tmp#MetaboliteGlyph_metabolite
Type extension of schema:glyph.datatype
Type hierarchy
Properties
content complex
Used by
Model
Children schema:BoundingBox
Instance
 
<schema:MetaboliteGlyph key="" metabolite="" name="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:BoundingBox>{1,1}</schema:BoundingBox>
</schema:MetaboliteGlyph>
Attributes
QName Type Use
key restriction of xs:ID required
metabolite restriction of xs:IDREF optional
name xs:string optional
Source
 
<xs:element name="MetaboliteGlyph">
  <xs:complexType>
    <xs:complexContent>
      <xs:extension base="schema:glyph.datatype">
        <xs:attribute name="metabolite">
          <xs:simpleType>
            <xs:restriction base="xs:IDREF">
              <xs:pattern value="Metabolite_\d+"/>
            </xs:restriction>
          </xs:simpleType>
        </xs:attribute>
      </xs:extension>
    </xs:complexContent>
  </xs:complexType>
</xs:element>
Element schema:ListOfReactionGlyphs
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ReactionGlyph CopasiML_xsd.tmp#listOfReactionGlyphs.datatype
Type schema:listOfReactionGlyphs.datatype
Properties
content complex
Used by
Complex Type schema:layout.datatype
Model
Children schema:ReactionGlyph
Instance
 
<schema:ListOfReactionGlyphs xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ReactionGlyph key="" name="" reaction="">{0,unbounded}</schema:ReactionGlyph>
</schema:ListOfReactionGlyphs>
Source
 
<xs:element name="ListOfReactionGlyphs" type="schema:listOfReactionGlyphs.datatype"/>
Element schema:ReactionGlyph
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ReactionGlyph_key CopasiML_xsd.tmp#ReactionGlyph_name CopasiML_xsd.tmp#ReactionGlyph_reaction CopasiML_xsd.tmp#BoundingBox CopasiML_xsd.tmp#ReactionGlyph_Curve CopasiML_xsd.tmp#ListOfMetaboliteReferenceGlyphs
Properties
content complex
Used by
Model
Children schema:BoundingBox, schema:Curve, schema:ListOfMetaboliteReferenceGlyphs
Instance
 
<schema:ReactionGlyph key="" name="" reaction="" xmlns:schema="http://www.copasi.org/static/schema">
  <schema:BoundingBox>{0,1}</schema:BoundingBox>
  <schema:Curve>{0,1}</schema:Curve>
  <schema:ListOfMetaboliteReferenceGlyphs>{0,1}</schema:ListOfMetaboliteReferenceGlyphs>
</schema:ReactionGlyph>
Attributes
QName Type Use
key restriction of xs:ID required
name xs:string optional
reaction restriction of xs:IDREF optional
Source
 
<xs:element name="ReactionGlyph">
  <xs:complexType>
    <xs:sequence>
      <xs:element minOccurs="0" ref="schema:BoundingBox"/>
      <xs:element minOccurs="0" name="Curve" type="schema:layoutCurve.datatype"/>
      <xs:element minOccurs="0" ref="schema:ListOfMetaboliteReferenceGlyphs"/>
    </xs:sequence>
    <xs:attribute name="key" use="required">
      <xs:simpleType>
        <xs:restriction base="xs:ID">
          <xs:pattern value="Layout_\d+"/>
        </xs:restriction>
      </xs:simpleType>
    </xs:attribute>
    <xs:attribute name="name" type="xs:string"/>
    <xs:attribute name="reaction">
      <xs:simpleType>
        <xs:restriction base="xs:IDREF">
          <xs:pattern value="Reaction_\d+"/>
        </xs:restriction>
      </xs:simpleType>
    </xs:attribute>
  </xs:complexType>
</xs:element>
Element schema:ReactionGlyph / schema:Curve
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#ListOfCurveSegments CopasiML_xsd.tmp#layoutCurve.datatype
Type schema:layoutCurve.datatype
Properties
content complex
minOccurs 0
Model
Children schema:ListOfCurveSegments
Instance
 
<schema:Curve xmlns:schema="http://www.copasi.org/static/schema">
  <schema:ListOfCurveSegments>{1,1}</schema:ListOfCurveSegments>
</schema:Curve>
Source
 
<xs:element minOccurs="0" name="Curve" type="schema:layoutCurve.datatype"/>
Element schema:ListOfCurveSegments
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#LineSegment CopasiML_xsd.tmp#curveSegment.element_CurveSegment CopasiML_xsd.tmp#CubicBezier CopasiML_xsd.tmp#curveSegment.element
Properties
content complex
Used by
Model
Children schema:CubicBezier, schema:CurveSegment, schema:LineSegment
Instance
 
<schema:ListOfCurveSegments xmlns:schema="http://www.copasi.org/static/schema">
  <schema:LineSegment>{1,1}</schema:LineSegment>
  <schema:CurveSegment>{1,1}</schema:CurveSegment>
  <schema:CubicBezier>{1,1}</schema:CubicBezier>
  <schema:CurveSegment>{1,1}</schema:CurveSegment>
</schema:ListOfCurveSegments>
Source
 
<xs:element name="ListOfCurveSegments">
  <xs:complexType>
    <xs:group maxOccurs="unbounded" ref="schema:curveSegment.element"/>
  </xs:complexType>
</xs:element>
Element schema:LineSegment
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Start CopasiML_xsd.tmp#End CopasiML_xsd.tmp#lineSegment.datatype
Type schema:lineSegment.datatype
Properties
content complex
Used by
Model
Children schema:End, schema:Start
Instance
 
<schema:LineSegment xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Start x="" y="">{1,1}</schema:Start>
  <schema:End x="" y="">{1,1}</schema:End>
</schema:LineSegment>
Source
 
<xs:element name="LineSegment" type="schema:lineSegment.datatype"/>
Element schema:Start
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#layoutPoint.datatype
Properties
content complex
Used by
Attributes
QName Type Use
x xs:double required
y xs:double required
Source
 
<xs:element name="Start">
  <xs:complexType>
    <xs:attributeGroup ref="schema:layoutPoint.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:End
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#layoutPoint.datatype
Properties
content complex
Used by
Attributes
QName Type Use
x xs:double required
y xs:double required
Source
 
<xs:element name="End">
  <xs:complexType>
    <xs:attributeGroup ref="schema:layoutPoint.datatype"/>
  </xs:complexType>
</xs:element>
Element schema:curveSegment.element / schema:CurveSegment
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Start CopasiML_xsd.tmp#End CopasiML_xsd.tmp#lineSegment.datatype
Type extension of schema:lineSegment.datatype
Type hierarchy
Properties
content complex
Model
Children schema:End, schema:Start
Instance
 
<schema:CurveSegment xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Start x="" y="">{1,1}</schema:Start>
  <schema:End x="" y="">{1,1}</schema:End>
</schema:CurveSegment>
Source
 
<xs:element name="CurveSegment">
  <xs:complexType>
    <xs:complexContent>
      <xs:extension base="schema:lineSegment.datatype">
        <xs:attributeGroup ref="x:type"/>
      </xs:extension>
    </xs:complexContent>
  </xs:complexType>
</xs:element>
Element schema:CubicBezier
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#Start CopasiML_xsd.tmp#End CopasiML_xsd.tmp#lineSegment.datatype CopasiML_xsd.tmp#BasePoint1 CopasiML_xsd.tmp#BasePoint2 CopasiML_xsd.tmp#cubicBezier.datatype
Type schema:cubicBezier.datatype
Type hierarchy
Properties
content complex
Used by
Model
Children schema:BasePoint1, schema:BasePoint2, schema:End, schema:Start
Instance
 
<schema:CubicBezier xmlns:schema="http://www.copasi.org/static/schema">
  <schema:Start x="" y="">{1,1}</schema:Start>
  <schema:End x="" y="">{1,1}</schema:End>
  <schema:BasePoint1 x="" y="">{0,1}</schema:BasePoint1>
  <schema:BasePoint2 x="" y="">{0,1}</schema:BasePoint2>
</schema:CubicBezier>
Source
 
<xs:element name="CubicBezier" type="schema:cubicBezier.datatype"/>
Element schema:BasePoint1
Namespace http://www.copasi.org/static/schema
Diagram
Diagram CopasiML_xsd.tmp#layoutPoint.datatype