CFitProblem.cpp File Reference

#include <cmath>
#include "copasi.h"
#include "CFitProblem.h"
#include "CFitItem.h"
#include "CFitTask.h"
#include "CExperimentSet.h"
#include "CExperiment.h"
#include "CopasiDataModel/CCopasiDataModel.h"
#include "report/CCopasiRootContainer.h"
#include "model/CModel.h"
#include "model/CState.h"
#include "report/CCopasiObjectReference.h"
#include "report/CKeyFactory.h"
#include "steadystate/CSteadyStateTask.h"
#include "trajectory/CTrajectoryTask.h"
#include "trajectory/CTrajectoryProblem.h"
#include "utilities/CProcessReport.h"
#include "utilities/CCopasiException.h"
#include "utilities/CAnnotatedMatrix.h"
#include "lapack/blaswrap.h"
#include "lapack/lapackwrap.h"

Include dependency graph for CFitProblem.cpp:

Go to the source code of this file.

Functions
void	createParameterSetsForExperiment (CExperiment *pExp)
std::ostream &	operator<< (std::ostream &os, const CFitProblem &o)

Function Documentation

void createParameterSetsForExperiment

(

CExperiment *

pExp

)

Utility function creating a parameter set for each experiment

Definition at line 807 of file CFitProblem.cpp.

References CCopasiVectorN< CType >::add(), C_INVALID_INDEX, CModelParameterSet::createFromModel(), CCopasiVectorN< CType >::getIndex(), CCopasiDataModel::getModel(), CModel::getModelParameterSets(), CCopasiObject::getObjectDataModel(), CCopasiObject::getObjectName(), and UTCTimeStamp().

Referenced by CFitProblem::calculate().

{
  if (pExp == NULL) return;

  CModel* model = pExp->getObjectDataModel()->getModel();
  std::string origname = "PE: "  + UTCTimeStamp() + " Exp: " + pExp->getObjectName();
  std::string name = origname;
  int count = 0;

  while (model->getModelParameterSets().getIndex(name) != C_INVALID_INDEX)
    {
      std::stringstream str; str << origname << " (" << ++count << ")";
      name = str.str();
    }

  CModelParameterSet* set = new CModelParameterSet(name);
  model->getModelParameterSets().add(set, true);
  set->createFromModel();
}

std::ostream& operator<<	(	std::ostream &	os,
		const CFitProblem &	o
	)

Output stream operator

Parameters

ostream	& os
const	CFitProblem & A

Returns

ostream & os

Definition at line 1240 of file CFitProblem.cpp.

References CCopasiTask::getDescription(), COptProblem::mpConstraintItems, COptProblem::mpOptItems, CFitProblem::mpSteadyState, CFitProblem::mpTrajectory, and CCopasiTask::CDescription::print().

{
  os << "Problem Description:" << std::endl;

  os << "Subtask: " << std::endl;

  if (o.mpSteadyState)
    o.mpSteadyState->getDescription().print(&os);

  if (o.mpTrajectory)
    o.mpTrajectory->getDescription().print(&os);

  if (!o.mpTrajectory && !o.mpSteadyState)
    os << "No Subtask specified.";

  os << std::endl;

  os << "List of Fitting Items:" << std::endl;

  std::vector< COptItem * >::const_iterator itItem =
    o.mpOptItems->begin();
  std::vector< COptItem * >::const_iterator endItem =
    o.mpOptItems->end();

  for (; itItem != endItem; ++itItem)
    os << "    " << *static_cast<CFitItem *>(*itItem) << std::endl;

  itItem = o.mpConstraintItems->begin();
  endItem = o.mpConstraintItems->end();

  for (; itItem != endItem; ++itItem)
    os << "    " << *static_cast<CFitItem *>(*itItem) << std::endl;

  return os;
}