COPASI API  4.16.103
CMetab Member List

This is the complete list of members for CMetab, including all inherited members.

add(CCopasiObject *pObject, const bool &adopt=true)CCopasiContainervirtual
addDirectDependency(const CCopasiObject *pObject)CCopasiObject
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addUnsupportedAnnotation(const std::string &name, const std::string &xml)CAnnotation
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
Array enum valueCCopasiObjectprotected
ASSIGNMENT enum valueCModelEntity
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())CCopasiObjectstatic
calculate()CMetabvirtual
CAnnotation()CAnnotation
CAnnotation(const CAnnotation &src)CAnnotation
castObject(CCopasiObject *pObject)CAnnotationstatic
castObject(const CCopasiObject *pObject)CAnnotationstatic
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)CCopasiContainer
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)CCopasiContainer
CCopasiObject()CCopasiObjectprotected
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)CCopasiObjectprotected
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL)CCopasiObject
cleanup()CMetab
clearDirectDependencies()CCopasiObject
clearRefresh()CCopasiObject
CMetab(const std::string &name="NoName", const CCopasiContainer *pParent=NULL)CMetab
CMetab(const CMetab &src, const CCopasiContainer *pParent=NULL)CMetab
CModelEntity(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="ModelEntity", const unsigned C_INT32 &flag=CCopasiObject::Container|CCopasiObject::ValueDbl)CModelEntity
CModelEntity(const CModelEntity &src, const CCopasiContainer *pParent=NULL)CModelEntity
CMoiety::add(C_FLOAT64 value, CMetab *pMetabolite)CMetabfriend
CObjectInterface()CObjectInterfaceinline
compile()CMetabvirtual
compileInitialValueDependencies()CMetab
compileIsInitialConcentrationChangeAllowed()CMetab
Container enum valueCCopasiObjectprotected
convertToConcentration(const C_FLOAT64 &number, const CCompartment &compartment, const CModel &model)CMetabstatic
convertToNumber(const C_FLOAT64 &concentration, const CCompartment &compartment, const CModel &model)CMetabstatic
DataModel enum valueCCopasiObjectprotected
DataObjectSet typedefCCopasiObject
DataUpdateSequence typedefCCopasiObject
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const CCopasiObject
EmptyListCCopasiContainerstatic
FIXED enum valueCModelEntity
Flag enum nameCCopasiObjectprotected
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const CCopasiObject
getChildObjectUnits(const CCopasiObject *pObject) const CMetabvirtual
getCN() const CCopasiObjectvirtual
getCompartment() const CMetab
getConcentration() const CMetab
getConcentrationRate() const CMetab
getConcentrationRateReference() const CMetab
getConcentrationReference() const CMetab
getDeletedObjects() const CMetabvirtual
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const CCopasiObjectvirtual
getExpression() const CModelEntity
getExpressionPtr() const CModelEntity
getExpressionPtr()CModelEntity
getInitialConcentration() const CMetab
getInitialConcentrationReference() const CMetab
getInitialExpression() const CModelEntity
getInitialExpressionPtr() const CModelEntity
getInitialExpressionPtr()CModelEntity
getInitialValue() const CModelEntity
getInitialValueReference() const CModelEntity
getKey() const CModelEntityvirtual
getMiriamAnnotation() const CAnnotation
getModel() const CMetab
getMoiety() const CMetab
getNotes() const CAnnotation
getObject(const CCopasiObjectName &cn) const CCopasiContainervirtual
getObjectAncestor(const std::string &type) const CCopasiObject
getObjectDataModel()CCopasiObject
getObjectDataModel() const CCopasiObject
getObjectDisplayName(bool regular=true, bool richtext=false) const CMetabvirtual
getObjectName() const CCopasiObject
getObjectParent() const CCopasiObject
getObjects() const CCopasiContainervirtual
getObjectType() const CCopasiObject
getPrerequisites() const CCopasiObjectvirtual
getRate() const CModelEntity
getRateReference() const CModelEntity
getRefresh() const CCopasiObjectvirtual
getSBMLId() const CModelEntity
getStatus() const CModelEntity
getTransitionTime() const CMetab
getUnits() const CCopasiContainervirtual
getUnsupportedAnnotations()CAnnotation
getUnsupportedAnnotations() const CAnnotation
getUpdateMethod() const CCopasiObject
getValue() const CModelEntity
getValueObject() const CMetabvirtual
getValuePointer() const CMetabvirtual
getValueReference() const CModelEntity
Gui enum valueCCopasiObjectprotected
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const CCopasiObject
hasUpdateMethod() const CCopasiObject
initCompartment(const CCompartment *pCompartment=NULL)CMetab
initObjects()CMetabprivate
isArray() const CCopasiObject
isContainer() const CCopasiObject
isDataModel() const CCopasiObject
isDependent() const CMetab
isFixed() const CModelEntityinline
isInitialConcentrationChangeAllowed() const CMetab
isMatrix() const CCopasiObject
isNameVector() const CCopasiObject
isNonUniqueName() const CCopasiObject
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const CCopasiObjectvirtual
isReference() const CCopasiObject
isRoot() const CCopasiObject
isSeparator() const CCopasiObject
isStaticString() const CCopasiObject
isUsed() const CModelEntity
isValueBool() const CCopasiObject
isValueDbl() const CCopasiObject
isValueInt() const CCopasiObject
isValueInt64() const CCopasiObject
isValueString() const CCopasiObject
isVector() const CCopasiObject
load(CReadConfig &configbuffer)CMetab
Matrix enum valueCCopasiObjectprotected
mConcCMetabprivate
mConcRateCMetabprivate
mIConcCMetabprivate
mIsInitialConcentrationChangeAllowedCMetabprivate
mKeyCAnnotationprotected
mObjectsCCopasiContainerprotected
ModelEntity enum valueCCopasiObjectprotected
mpCompartmentCMetabprivate
mpConcRateReferenceCMetabprotected
mpConcReferenceCMetabprotected
mpExpressionCModelEntityprotected
mpIConcReferenceCMetabprotected
mpInitialExpressionCModelEntityprotected
mpIValueCModelEntityprotected
mpIValueReferenceCModelEntityprotected
mpModelCModelEntityprotected
mpMoietyCMetabprivate
mpRateReferenceCModelEntityprotected
mpTTReferenceCMetabprotected
mpValueCModelEntityprotected
mpValueReferenceCModelEntityprotected
mRateCModelEntityprotected
mRateVectorCMetabprivate
mSBMLIdCModelEntityprotected
mTTCMetabprivate
mustBeDeleted(const DataObjectSet &deletedObjects) const CMetabvirtual
NameVector enum valueCCopasiObjectprotected
NonUniqueName enum valueCCopasiObjectprotected
objectMap typedefCCopasiContainer
ObjectSet typedefCObjectInterface
ODE enum valueCModelEntity
operator<<(std::ostream &os, const CMetab &d)CMetabfriend
operator=(const CMetabOld &rhs)CMetab
operator==(const CAnnotation &rhs) const CAnnotation
print(std::ostream *ostream) const CCopasiObjectvirtual
REACTIONS enum valueCModelEntity
Reference enum valueCCopasiObjectprotected
refreshConcentration()CMetab
refreshConcentrationRate()CMetab
refreshInitialConcentration()CMetab
refreshInitialValue()CMetabvirtual
refreshNumber()CMetab
refreshRate()CMetab
refreshTransitionTime()CMetab
remove(CCopasiObject *pObject)CCopasiContainervirtual
removeDirectDependency(const CCopasiObject *pObject)CCopasiObject
removeUnsupportedAnnotation(const std::string &name)CAnnotation
replaceUnsupportedAnnotation(const std::string &name, const std::string &xml)CAnnotation
Root enum valueCCopasiObjectprotected
Separator enum valueCCopasiObjectprotected
setConcentration(const C_FLOAT64 concentration)CMetab
setDependentOn(const CMoiety *pMoiety)CMetab
setDirectDependencies(const DataObjectSet &directDependencies)CCopasiObject
setExpression(const std::string &expression)CModelEntity
setExpressionPtr(CExpression *pExpression)CModelEntity
setInitialConcentration(const C_FLOAT64 &initialConcentration)CMetab
setInitialExpression(const std::string &expression)CModelEntity
setInitialExpressionPtr(CExpression *pExpression)CModelEntity
setInitialValue(const C_FLOAT64 &initialValue)CModelEntityvirtual
setInitialValuePtr(C_FLOAT64 *pInitialValue)CModelEntity
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId)CAnnotation
setNotes(const std::string &notes)CAnnotation
setObjectName(const std::string &name)CCopasiObject
setObjectParent(const CCopasiContainer *pParent)CMetabvirtual
setObjectValue(const C_FLOAT64 &value)CCopasiObject
setObjectValue(const C_INT32 &value)CCopasiObject
setObjectValue(const bool &value)CCopasiObject
setRate(const C_FLOAT64 &rate)CModelEntity
setRefresh(CType *pType, void(CType::*method)(void))CCopasiObjectinline
setRenameHandler(CRenameHandler *rh)CCopasiObjectinlinestatic
setSBMLId(const std::string &id)CModelEntity
setStatus(const CModelEntity::Status &status)CMetabvirtual
setTransitionTime(const C_FLOAT64 &transitionTime)CMetab
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const bool &))CCopasiObjectinline
setUsed(const bool &used)CModelEntity
setValue(const C_FLOAT64 &value)CModelEntityvirtual
setValuePtr(C_FLOAT64 *pValue)CModelEntity
smpRenameHandlerCCopasiObjectprotectedstatic
StaticString enum valueCCopasiObjectprotected
Status enum nameCModelEntity
StatusNameCModelEntitystatic
TIME enum valueCModelEntity
UnsupportedAnnotation typedefCAnnotation
UpdateSequence typedefCObjectInterface
ValueBool enum valueCCopasiObjectprotected
ValueDbl enum valueCCopasiObjectprotected
ValueInt enum valueCCopasiObjectprotected
ValueInt64 enum valueCCopasiObjectprotected
ValueString enum valueCCopasiObjectprotected
Vector enum valueCCopasiObjectprotected
XMLStatusCModelEntitystatic
~CAnnotation()CAnnotationvirtual
~CCopasiContainer()CCopasiContainervirtual
~CCopasiObject()CCopasiObjectvirtual
~CMetab()CMetab
~CModelEntity()CModelEntity
~CObjectInterface()CObjectInterfaceinlinevirtual