CSEDMLExporter.cpp File Reference

#include <sbml/math/FormulaParser.h>
#include <sedml/SedTypes.h>
#include <sbml/SBMLTypes.h>
#include "SEDMLUtils.h"
#include "sbml/CSBMLExporter.h"
#include "CSEDMLExporter.h"
#include "trajectory/CTrajectoryTask.h"
#include "trajectory/CTrajectoryProblem.h"
#include "scan/CScanTask.h"
#include "scan/CScanProblem.h"
#include "utilities/CCopasiException.h"
#include "utilities/CVersion.h"
#include "utilities/CCopasiMessage.h"
#include "utilities/CDirEntry.h"
#include "CopasiDataModel/CCopasiDataModel.h"
#include "plot/COutputDefinitionVector.h"
#include "plot/CPlotSpecification.h"
#include "report/CReportDefinition.h"
#include "model/CModel.h"
#include "model/CCompartment.h"
#include "model/CModelValue.h"
#include "commandline/CLocaleString.h"

Include dependency graph for CSEDMLExporter.cpp:

Go to the source code of this file.

Functions
SedDataGenerator *	createDataGenerator (SedDocument *mpSEDMLDocument, const std::string &sbmlId, const std::string &targetXPathString, const std::string &taskId, size_t i, size_t j)
std::string	createUniqueModelFileName (const std::string &dir, const std::string &baseName, const std::string &extension=".xml")

Function Documentation

SedDataGenerator* createDataGenerator	(	SedDocument *	mpSEDMLDocument,
		const std::string &	sbmlId,
		const std::string &	targetXPathString,
		const std::string &	taskId,
		size_t	i,
		size_t	j
	)

Definition at line 387 of file CSEDMLExporter.cpp.

References SEDML_TIME_URN.

Referenced by CSEDMLExporter::createDataGenerators().

{
  SedDataGenerator *pPDGen = mpSEDMLDocument->createDataGenerator();
  std::ostringstream idStrStream;
  idStrStream << sbmlId;
  idStrStream << "_";
  idStrStream << j + 1;
  pPDGen->setId(idStrStream.str());

  pPDGen->setName(sbmlId);

  SedVariable * pPVar = pPDGen->createVariable();
  std::ostringstream idVarStrStream;
  idVarStrStream << "p";
  idVarStrStream << i + 1;
  idVarStrStream << "_";
  idVarStrStream << pPDGen->getName();
  pPVar->setId(idVarStrStream.str());
  pPVar->setTaskReference(taskId);
  pPVar->setName(pPDGen->getName());

  pPDGen->setMath(SBML_parseFormula(pPVar->getId().c_str()));

  if (targetXPathString == SEDML_TIME_URN)
    {
      pPVar->setSymbol(targetXPathString);
    }
  else
    {
      pPVar->setTarget(targetXPathString);
    }

  return pPDGen;
}

std::string createUniqueModelFileName	(	const std::string &	dir,
		const std::string &	baseName,
		const std::string &	extension = ".xml"
	)

Definition at line 71 of file CSEDMLExporter.cpp.

References CDirEntry::exist(), and CDirEntry::Separator.

Referenced by CSEDMLExporter::exportModelAndTasks().

{
  int count = 1;
  std::string current = baseName + extension;

  while (CDirEntry::exist(dir + CDirEntry::Separator + current))
    {
      std::stringstream temp;
      temp << baseName << count << extension;
      current = temp.str();
      ++count;
    }

  return current;
}