CReaction.cpp File Reference

#include "copasi.h"
#include <algorithm>
#include <stdio.h>
#include "CopasiDataModel/CCopasiDataModel.h"
#include "CReaction.h"
#include "CCompartment.h"
#include "CModel.h"
#include "utilities/CReadConfig.h"
#include "utilities/CCopasiMessage.h"
#include "utilities/CCopasiException.h"
#include "utilities/CNodeIterator.h"
#include "utilities/utility.h"
#include "function/CFunctionDB.h"
#include "report/CCopasiObjectReference.h"
#include "report/CKeyFactory.h"
#include "CMetabNameInterface.h"
#include "CChemEqInterface.h"
#include "CChemEqElement.h"
#include "function/CExpression.h"
#include "report/CCopasiRootContainer.h"
#include "sbml/Species.h"
#include "sbml/Parameter.h"
#include "sbml/Compartment.h"
#include "sbml/SBMLImporter.h"

Include dependency graph for CReaction.cpp:

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Functions
std::ostream &	operator<< (std::ostream &os, const CReaction &d)

Function Documentation

std::ostream& operator<<	(	std::ostream &	os,
		const CReaction &	d
	)

Friend declaration for ostream operator

Parameters

std::ostream	& os
const	CReaction & d

Returns

std::ostream & os

Definition at line 1029 of file CReaction.cpp.

References CCopasiObject::getObjectName(), CReaction::mChemEq, CReaction::mFlux, CReaction::mMetabKeyMap, CReaction::mParameters, CReaction::mpFunction, CReaction::mSBMLId, CReaction::mScalingFactor, and CReaction::mUnitScalingFactor.

{
  os << "CReaction:  " << d.getObjectName() << std::endl;
  os << "   SBML id:  " << d.mSBMLId << std::endl;

  os << "   mChemEq " << std::endl;
  os << d.mChemEq;

  if (d.mpFunction)
    os << "   *mpFunction " << d.mpFunction->getObjectName() << std::endl;
  else
    os << "   mpFunction == 0 " << std::endl;

  //os << "   mParameterDescription: " << std::endl << d.mParameterDescription;
  os << "   mFlux: " << d.mFlux << std::endl;

  if (d.mScalingFactor)
    os << "   *mScalingFactor " << *(d.mScalingFactor) << std::endl;
  else
    os << "   mScalingFactor == NULL " << std::endl;

  if (d.mUnitScalingFactor)
    os << "   *mUnitScalingFactor " << *(d.mUnitScalingFactor) << std::endl;
  else
    os << "   mUnitScalingFactor == NULL " << std::endl;

  os << "   parameter group:" << std::endl;
  os << d.mParameters;

  os << "   key map:" << std::endl;
  size_t i, j;

  for (i = 0; i < d.mMetabKeyMap.size(); ++i)
    {
      os << i << ": ";

      for (j = 0; j < d.mMetabKeyMap[i].size(); ++j)
        os << d.mMetabKeyMap[i][j] << ", ";

      os << std::endl;
    }

  os << "----CReaction" << std::endl;

  return os;
}