COPASI API  4.40.278
CKinFunction Member List

This is the complete list of members for CKinFunction, including all inherited members.

__SIZE enum valueCDataObject
add(CDataObject *pObject, const bool &adopt=true)CDataContainervirtual
addIssue(const CIssue &issue)CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addReference(const CDataContainer *pReference)CDataObject
addUnsupportedAnnotation(const std::string &name, const std::string &xml)CAnnotation
addVariable(const std::string &name, CFunctionParameter::Role usage=CFunctionParameter::Role::VARIABLE, const CFunctionParameter::DataType &type=CFunctionParameter::DataType::FLOAT64)CFunction
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
allocateMiriamInfo(CDataContainer *pParent)CAnnotationstatic
appendDeletedDependentData(CUndoData &undoData) constCDataContainervirtual
applyData(const CData &data, CUndoData::CChangeSet &changes)CFunctionvirtual
Array enum valueCDataObject
buildCalculationSequence()CEvaluationTreeprotected
calculate()CEvaluationTreeprotected
calculateValue() overrideCDataObjectvirtual
calcValue(const CCallParameters< C_FLOAT64 > &callParameters)CFunctionvirtual
calls(std::set< std::string > &list) constCEvaluationTree
CAnnotation()CAnnotation
CAnnotation(const CAnnotation &src)CAnnotation
castObject(CDataObject *pObject)CAnnotationstatic
castObject(const CDataObject *pObject)CAnnotationstatic
CDataContainer()CDataContainerprivate
CDataContainer(const CDataContainer &src)CDataContainerprotected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)CDataContainer
CDataObject()CDataObjectprotected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataObjectprotected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)CDataObject
CEvaluationTree(const CEvaluationTree &src)CEvaluationTreeprotected
CEvaluationTree(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT, const Type &type=Function)CEvaluationTree
CEvaluationTree(const CEvaluationTree &src, const CDataContainer *pParent)CEvaluationTree
CFunction(const CFunction &src)CFunctionprotected
CFunction(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT, const Type &type=Function)CFunction
CFunction(const CFunction &src, const CDataContainer *pParent)CFunction
CKinFunction(const CFunction &src)CKinFunctionprotected
CKinFunction(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT)CKinFunction
CKinFunction(const CFunction &src, const CDataContainer *pParent, CReadConfig *configBuffer=NULL)CKinFunction
CKinFunction(const CKinFunction &src, const CDataContainer *pParent)CKinFunction
cleanup()CKinFunction
cleanupNodes()CKinFunctionprivate
clearNodes()CEvaluationTreeprotected
CObjectInterface()CObjectInterface
CObjectInterface(const CObjectInterface &src)CObjectInterface
compile()CEvaluationTreevirtual
compileNodes()CEvaluationTreeprotected
completeFunctionList(std::vector< const CFunction * > &list, const size_t &added=0)CFunctionstatic
Container enum valueCDataObject
Container2InfoCAnnotationprivatestatic
ContainerList typedefCObjectInterface
containsCN(const DataObjectSet &elements) constCEvaluationTree
copy(const CEvaluationTree &src)CEvaluationTreestatic
create(CEvaluationTree::Type type)CEvaluationTreestatic
createCopy() constCFunction
createListOfParametersForMathML(std::vector< std::vector< std::string > > &env)CFunction
createParameters()CKinFunctionprivate
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) constCFunctionvirtual
CUndoObjectInterface()CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)CUndoObjectInterface
DataModel enum valueCDataObject
DataObject(const CObjectInterface *pInterface)CObjectInterfacestatic
DataObjectSet typedefCDataObject
destruct() overrideCDataObjectvirtual
DisplayName enum valueCDataObject
EmptyListCDataContainerstatic
Expression enum valueCEvaluationTree
Flag enum nameCDataObject
freeMiriamInfo(CDataContainer *pParent)CAnnotationstatic
fromAST(const ASTNode *pASTNode, bool isFunction)CEvaluationTreestatic
fromData(const CData &data, CUndoObjectInterface *pParent)CFunctionstatic
Function enum valueCEvaluationTree
generateUuid()CUndoObjectInterface
getChildObjectUnits(const CDataObject *pObject) constCDataContainervirtual
getCN() const overrideCDataObjectvirtual
getDataObject() const overrideCDataObjectvirtual
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) constCDataContainer
getErrorPosition() constCEvaluationTree
getIndex(const CDataObject *pObject) constCDataContainervirtual
getInfix() constCEvaluationTree
getKey() constCFunctionvirtual
getMiriamAnnotation() constCAnnotation
getNodeList() constCEvaluationTree
getNodeObject(const CCommonName &CN) constCEvaluationTreevirtual
getNodes()CKinFunction
getNotes() constCAnnotation
getObject(const CCommonName &cn) const overrideCDataContainervirtual
getObjectAncestor(const std::string &type) constCDataObject
getObjectDataModel() constCDataObject
getObjectDisplayName() const overrideCDataObjectvirtual
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)CObjectInterfacestatic
getObjectFromCN(const CCommonName &cn) constCDataObject
getObjectName() constCDataObject
getObjectParent() constCDataObject
getObjects() constCDataContainervirtual
getObjects()CDataContainervirtual
getObjectType() constCDataObject
getPrerequisites() const overrideCDataObjectvirtual
getRoot()CEvaluationTree
getRoot() constCEvaluationTree
getSBMLId() constCFunction
getType() constCEvaluationTree
getUnits() const overrideCDataContainervirtual
getUnsupportedAnnotations()CAnnotation
getUnsupportedAnnotations() constCAnnotation
getUuid() constCUndoObjectInterface
getValidity() const overrideCDataObjectvirtual
getValueObject() const overrideCDataContainervirtual
getValuePointer() const overrideCDataObjectvirtual
getVariableIndex(const std::string &name) constCFunctionvirtual
getVariables()CFunction
getVariables() constCFunction
getVariableValue(const size_t &index) constCFunctionvirtual
Gui enum valueCDataObject
hasCircularDependency() constCEvaluationTree
hasDiscontinuity() constCEvaluationTree
hasFlag(const Flag &flag) constCDataObject
initMiriamAnnotation(const std::string &newId)CAnnotation
initObjects()CEvaluationTreeprivate
initVariables()CFunctionprotected
insert(const CData &data) overrideCDataContainervirtual
isBoolean() constCEvaluationTree
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const overrideCDataObjectvirtual
isReadOnly() constCFunctionvirtual
isReversible() constCFunction
isSuitable(const size_t noSubstrates, const size_t noProducts, const TriLogic reversible)CFunction
isValidXML(const std::string &xml)CAnnotationprivatestatic
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)CFunctionvirtual
mAggregateValidityCDataObjectprivate
mapObjectNodes(const CDataContainer *pSrc, const CDataContainer *pTarget)CEvaluationTree
MassAction enum valueCEvaluationTree
MathExpression enum valueCEvaluationTree
Matrix enum valueCDataObject
mCalculationSequenceCEvaluationTreeprotected
mCallParametersBeginCFunctionprivate
mErrorPositionCEvaluationTreeprivate
mInfixCEvaluationTreeprotected
mKeyCAnnotationprotected
mMiriamAnnotationCAnnotationprivate
mNidxCKinFunctionprivate
mNodesCKinFunctionprivate
mNotesCAnnotationprivate
mObjectDisplayNameCDataObjectmutableprivate
mObjectFlagCDataObjectprivate
mObjectNameCDataObjectprivate
mObjectsCDataContainerprotected
mObjectTypeCDataObjectprivate
ModelEntity enum valueCDataObject
mpNodeListCEvaluationTreeprotected
mpObjectDisplayNameCDataObjectmutableprivate
mpObjectNameCDataObjectmutableprivate
mpObjectParentCDataObjectprivate
mPrerequisitsCDataObjectprotected
mpRootNodeCEvaluationTreeprivate
mpRootValueCEvaluationTreeprotected
mpUuidCUndoObjectInterfaceprivate
mReferencedValiditiesCDataObjectprivate
mReferencesCDataObjectprotected
mReversibleCFunctionprivate
mSBMLIdCFunctionprivate
mTypeCEvaluationTreeprotected
mUnsupportedAnnotationsCAnnotationprivate
mUuidLockedCUndoObjectInterfaceprivate
mValidityCObjectInterfacemutableprotected
mValueCEvaluationTreeprotected
mVariablesCFunctionprivate
mXMLIdCAnnotationprivate
NameVector enum valueCDataObject
NonUniqueName enum valueCDataObject
objectMap typedefCDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)CDataContainer
ObjectSet typedefCObjectInterface
ObjListCKinFunctionprivate
operator==(const CFunction &rhs) constCFunction
CEvaluationTree::operator==(const CEvaluationTree &rhs) constCEvaluationTree
CAnnotation::operator==(const CAnnotation &rhs) constCAnnotation
parse()CEvaluationTreeprotected
PreDefined enum valueCEvaluationTree
prerequisitsContains(const DataObjectSet &objects) constCDataObject
print(std::ostream *ostream) const overrideCDataObjectvirtual
Reference enum valueCDataObject
refreshAggregateValidity()CDataObjectprivate
remove(CDataObject *pObject)CDataContainervirtual
removeIssue(const CIssue &issue)CDataObject
removeReference(const CDataContainer *pReference)CDataObject
removeUnsupportedAnnotation(const std::string &name)CAnnotation
replaceUnsupportedAnnotation(const std::string &name, const std::string &xml)CAnnotation
Root enum valueCDataObject
sanitizeObjectName(std::string &name)CDataObjectstatic
Separator enum valueCDataObject
setInfix(const std::string &infix)CFunctionvirtual
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId)CAnnotation
setNotes(const std::string &notes)CAnnotation
setObjectName(const std::string &name)CDataObject
setObjectParent(const CDataContainer *pParent)CDataObjectvirtual
setReversible(const TriLogic &reversible)CFunction
setRoot(CEvaluationNode *pRootNode)CEvaluationTreevirtual
setSBMLId(const std::string &id)CFunction
setTree(const ASTNode &pRootNode, bool isFunction)CEvaluationTree
setType(const CEvaluationTree::Type &type)CEvaluationTreeprotected
setUuid(const xg::Guid &uuid)CUndoObjectInterface
setUuid(const std::string &uuid)CUndoObjectInterface
size() constCEvaluationTree
splitFunction(const CEvaluationNode *node, const std::string &name1, const std::string &name2) constCFunction
StaticString enum valueCDataObject
toAST(const CDataModel *pDataModel) constCEvaluationTreevirtual
toData() constCFunctionvirtual
Type enum nameCEvaluationTree
TypeNameCEvaluationTreestatic
UnsupportedAnnotation typedefCAnnotation
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)CUndoObjectInterfacevirtual
updateTree()CEvaluationTree
UserDefined enum valueCEvaluationTree
validityChanged(const CValidity &changedValidity) overrideCDataObjectvirtual
validityRemoved(const CValidity &changedValidity)CDataObject
ValueBool enum valueCDataObject
ValueDbl enum valueCDataObject
ValueInt enum valueCDataObject
ValueInt64 enum valueCDataObject
ValueString enum valueCDataObject
Vector enum valueCDataObject
writeMathML(std::ostream &out, size_t l=0) constCFunctionvirtual
writeMathML(const std::vector< std::vector< std::string > > &variables, bool expand=true, bool fullExpand=true) constCFunctionvirtual
XMLTypeCEvaluationTreestatic
~CAnnotation()CAnnotationvirtual
~CDataContainer()CDataContainervirtual
~CDataObject()CDataObjectvirtual
~CEvaluationTree()CEvaluationTreevirtual
~CFunction()CFunctionvirtual
~CKinFunction()CKinFunction
~CObjectInterface()CObjectInterfacevirtual
~CUndoObjectInterface()CUndoObjectInterfacevirtual