add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addGroup(const std::string &name) | CCopasiParameterGroup | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addOptItem(const CCopasiObjectName &objectCN) | COptProblem | |
addParameter(const CCopasiParameter ¶meter) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value) | CCopasiParameterGroup | inline |
addParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
Array enum value | CCopasiObject | protected |
assertGroup(const std::string &name) | CCopasiParameterGroup | |
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue) | CCopasiParameterGroup | inline |
beginIndex() const | CCopasiParameterGroup | |
beginName() const | CCopasiParameterGroup | |
BOOL enum value | CCopasiParameter | |
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
calculate() | COptProblem | virtual |
calculateStatistics(const C_FLOAT64 &factor=1.0e-003, const C_FLOAT64 &resolution=1.0e-009) | COptProblem | virtual |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiObject() | CCopasiObject | protected |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL) | CCopasiParameter | |
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter") | CCopasiParameter | |
CCopasiParameterGroup() | CCopasiParameterGroup | protected |
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL) | CCopasiParameterGroup | |
CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup") | CCopasiParameterGroup | |
CCopasiProblem(const CCopasiTask::Type &type, const CCopasiContainer *pParent=NULL) | CCopasiProblem | protected |
CCopasiProblem(const CCopasiProblem &src, const CCopasiContainer *pParent=NULL) | CCopasiProblem | |
checkFunctionalConstraints() | COptProblem | virtual |
checkParametricConstraints() | COptProblem | virtual |
clear() | CCopasiParameterGroup | |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
CN enum value | CCopasiParameter | |
CObjectInterface() | CObjectInterface | inline |
Container enum value | CCopasiObject | protected |
COptProblem(const CCopasiTask::Type &type=CCopasiTask::optimization, const CCopasiContainer *pParent=NULL) | COptProblem | |
COptProblem(const COptProblem &src, const CCopasiContainer *pParent=NULL) | COptProblem | |
DataModel enum value | CCopasiObject | protected |
DataObjectSet typedef | CCopasiObject | |
DataUpdateSequence typedef | CCopasiObject | |
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
DOUBLE enum value | CCopasiParameter | |
elevateChildren() | COptProblem | virtual |
EmptyList | CCopasiContainer | static |
endIndex() const | CCopasiParameterGroup | |
endName() const | CCopasiParameterGroup | |
EXPRESSION enum value | CCopasiParameter | |
FILE enum value | CCopasiParameter | |
Flag enum name | CCopasiObject | protected |
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
getCalculateStatistics() const | COptProblem | |
getCalculateValue() const | COptProblem | |
getCalculateVariableUpdateMethods() const | COptProblem | |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
getCN() const | CCopasiParameter | virtual |
getConstraintList() const | COptProblem | |
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
getExecutionTime() const | COptProblem | |
getFunctionEvaluations() const | COptProblem | |
getGroup(const std::string &name) | CCopasiParameterGroup | |
getGroup(const std::string &name) const | CCopasiParameterGroup | |
getGroup(const size_t &index) | CCopasiParameterGroup | |
getGroup(const size_t &index) const | CCopasiParameterGroup | |
getIndex(const std::string &name) const | CCopasiParameterGroup | |
getKey(const std::string &name) const | CCopasiParameterGroup | |
getKey(const size_t &index) const | CCopasiParameterGroup | |
CCopasiParameter::getKey() const | CCopasiParameter | virtual |
getModel() const | CCopasiProblem | |
getName(const size_t &index) const | CCopasiParameterGroup | virtual |
getObject(const CCopasiObjectName &cn) const | CCopasiParameterGroup | virtual |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiParameter | virtual |
getObjectiveFunction() | COptProblem | |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | virtual |
getObjectType() const | CCopasiObject | |
getOptItem(const size_t &index) | COptProblem | |
getOptItemList() const | COptProblem | |
getOptItemSize() const | COptProblem | |
getParameter(const std::string &name) | CCopasiParameterGroup | |
getParameter(const std::string &name) const | CCopasiParameterGroup | |
getParameter(const size_t &index) | CCopasiParameterGroup | |
getParameter(const size_t &index) const | CCopasiParameterGroup | |
getPrerequisites() const | CCopasiObject | virtual |
getRandomizeStartValues() const | COptProblem | |
getRefresh() const | CCopasiObject | virtual |
getSolutionValue() const | COptProblem | |
getSolutionVariables() const | COptProblem | |
getSubtaskType() const | COptProblem | |
getType() const | CCopasiProblem | |
CCopasiParameterGroup::getType(const std::string &name) const | CCopasiParameterGroup | |
CCopasiParameterGroup::getType(const size_t &index) const | CCopasiParameterGroup | |
getUniqueParameterName(const CCopasiParameter *pParameter) const | CCopasiParameterGroup | |
getUnits() const | CCopasiContainer | virtual |
getUpdateMethod() const | CCopasiObject | |
getValue(const std::string &name) const | CCopasiParameterGroup | |
getValue(const size_t &index) const | CCopasiParameterGroup | |
getValue(const std::string &name) | CCopasiParameterGroup | |
getValue(const size_t &index) | CCopasiParameterGroup | |
CCopasiParameter::getValue() const | CCopasiParameter | |
CCopasiParameter::getValue() | CCopasiParameter | |
getValueObject() const | CCopasiContainer | virtual |
getValuePointer() const | CCopasiParameter | virtual |
getValueReference() const | CCopasiParameter | |
getVariableGradients() const | COptProblem | |
getVariableSize() const | COptProblem | |
GROUP enum value | CCopasiParameter | |
Gui enum value | CCopasiObject | protected |
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
hasUpdateMethod() const | CCopasiObject | |
incrementEvaluations(unsigned C_INT32 increment) | COptProblem | |
index_iterator typedef | CCopasiParameterGroup | |
initialize() | COptProblem | virtual |
initializeParameter() | COptProblem | private |
initializeSubtaskBeforeOutput() | COptProblem | virtual |
initObjects() | COptProblem | private |
INT enum value | CCopasiParameter | |
INVALID enum value | CCopasiParameter | |
isArray() const | CCopasiObject | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isValidValue(const C_FLOAT64 &value) const | CCopasiParameter | |
isValidValue(const C_INT32 &value) const | CCopasiParameter | |
isValidValue(const unsigned C_INT32 &value) const | CCopasiParameter | |
isValidValue(const bool &value) const | CCopasiParameter | |
isValidValue(const std::string &value) const | CCopasiParameter | |
isValidValue(const CCopasiObjectName &value) const | CCopasiParameter | |
isValidValue(const std::vector< CCopasiParameter * > &value) const | CCopasiParameter | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueInt64() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
KEY enum value | CCopasiParameter | |
Matrix enum value | CCopasiObject | protected |
maximize() const | COptProblem | |
mCalculateValue | COptProblem | protected |
mConstraintCounter | COptProblem | protected |
mCounter | COptProblem | protected |
mCPUTime | COptProblem | protected |
mFailedConstraintCounter | COptProblem | protected |
mFailedCounter | COptProblem | protected |
mGradient | COptProblem | protected |
mHaveStatistics | COptProblem | protected |
mhCounter | COptProblem | protected |
mhSolutionValue | COptProblem | protected |
mInitialRefreshMethods | COptProblem | protected |
mKey | CCopasiParameter | protected |
mObjects | CCopasiContainer | protected |
ModelEntity enum value | CCopasiObject | protected |
mOriginalVariables | COptProblem | protected |
mpCallBack | CCopasiProblem | protected |
mpConstraintItems | COptProblem | protected |
mpGrpConstraints | COptProblem | protected |
mpGrpItems | COptProblem | protected |
mpModel | CCopasiProblem | protected |
mpObjectiveExpression | COptProblem | protected |
mpOptItems | COptProblem | protected |
mpParmCalculateStatistics | COptProblem | protected |
mpParmMaximize | COptProblem | protected |
mpParmObjectiveExpression | COptProblem | protected |
mpParmRandomizeStartValues | COptProblem | protected |
mpParmSubtaskCN | COptProblem | protected |
mpReport | CCopasiProblem | protected |
mpSubtask | COptProblem | mutableprotected |
mpValueReference | CCopasiParameter | mutableprotected |
mRefreshConstraints | COptProblem | protected |
mRefreshMethods | COptProblem | protected |
mSize | CCopasiParameter | protected |
mSolutionValue | COptProblem | protected |
mSolutionVariables | COptProblem | protected |
mStoreResults | COptProblem | protected |
mUpdateMethods | COptProblem | protected |
mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
mValue | CCopasiParameter | protected |
mWorstValue | COptProblem | protected |
name_iterator typedef | CCopasiParameterGroup | |
NameVector enum value | CCopasiObject | protected |
NonUniqueName enum value | CCopasiObject | protected |
objectMap typedef | CCopasiContainer | |
ObjectSet typedef | CObjectInterface | |
operator<<(std::ostream &os, const COptProblem &o) | COptProblem | friend |
operator=(const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | |
CCopasiParameter::operator=(const CCopasiParameter &rhs) | CCopasiParameter | |
parameterGroup typedef | CCopasiParameterGroup | |
print(std::ostream *ostream) const | COptProblem | virtual |
printResult(std::ostream *ostream) const | COptProblem | virtual |
randomizeStartValues() | COptProblem | |
Reference enum value | CCopasiObject | protected |
rememberStartValues() | COptProblem | |
remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
removeOptItem(const size_t &index) | COptProblem | |
removeParameter(const std::string &name) | CCopasiParameterGroup | |
removeParameter(const size_t &index) | CCopasiParameterGroup | |
reset() | COptProblem | |
resetEvaluations() | COptProblem | |
restore(const bool &updateModel) | COptProblem | virtual |
restoreModel(const bool &updateModel) | COptProblem | |
Root enum value | CCopasiObject | protected |
Separator enum value | CCopasiObject | protected |
setCalculateStatistics(const bool &calculate) | COptProblem | |
setCallBack(CProcessReport *pCallBack) | COptProblem | virtual |
setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
setMaximize(const bool &maximize) | COptProblem | |
setModel(CModel *pModel) | COptProblem | virtual |
setObjectiveFunction(const std::string &infix) | COptProblem | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setRandomizeStartValues(const bool &randomize) | COptProblem | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
setSolution(const C_FLOAT64 &value, const CVector< C_FLOAT64 > &variables) | COptProblem | virtual |
setSubtaskType(const CCopasiTask::Type &subtaskType) | COptProblem | |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
setValue(const std::string &name, const CType &value) | CCopasiParameterGroup | inline |
setValue(const size_t &index, const CType &value) | CCopasiParameterGroup | inline |
CCopasiParameter::setValue(const CType &value) | CCopasiParameter | inline |
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value) | CCopasiParameter | |
size() const | CCopasiParameterGroup | |
smpRenameHandler | CCopasiObject | protectedstatic |
StaticString enum value | CCopasiObject | protected |
STRING enum value | CCopasiParameter | |
swap(const size_t &iFrom, const size_t &iTo) | CCopasiParameterGroup | |
swap(index_iterator &from, index_iterator &to) | CCopasiParameterGroup | |
swapOptItem(const size_t &iFrom, const size_t &iTo) | COptProblem | |
Type enum name | CCopasiParameter | |
TypeName | CCopasiParameter | static |
UDOUBLE enum value | CCopasiParameter | |
UINT enum value | CCopasiParameter | |
UpdateSequence typedef | CObjectInterface | |
ValidSubtasks | COptProblem | static |
ValueBool enum value | CCopasiObject | protected |
ValueDbl enum value | CCopasiObject | protected |
ValueInt enum value | CCopasiObject | protected |
ValueInt64 enum value | CCopasiObject | protected |
ValueString enum value | CCopasiObject | protected |
Vector enum value | CCopasiObject | protected |
XMLType | CCopasiParameter | static |
~CCopasiContainer() | CCopasiContainer | virtual |
~CCopasiObject() | CCopasiObject | virtual |
~CCopasiParameter() | CCopasiParameter | virtual |
~CCopasiParameterGroup() | CCopasiParameterGroup | virtual |
~CCopasiProblem() | CCopasiProblem | virtual |
~CObjectInterface() | CObjectInterface | inlinevirtual |
~COptProblem() | COptProblem | virtual |