add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
Array enum value | CCopasiObject | protected |
averageDivergence() const | CLyapTask | inline |
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
calculationsBeforeOutput() | CLyapTask | private |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiObject() | CCopasiObject | protected |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
CCopasiTask(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="Task") | CCopasiTask | |
CCopasiTask(const Type &taskType, const CCopasiContainer *pParent=NULL, const std::string &type="Task") | CCopasiTask | |
CCopasiTask(const CCopasiTask &src, const CCopasiContainer *pParent=NULL) | CCopasiTask | |
cleanup() | CLyapTask | private |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
CLyapTask(const CCopasiContainer *pParent=NULL) | CLyapTask | |
CLyapWolfMethod class | CLyapTask | friend |
CObjectInterface() | CObjectInterface | inline |
Container enum value | CCopasiObject | protected |
createMethod(const int &type) const | CLyapTask | virtual |
crosssection enum value | CCopasiTask | |
DataModel enum value | CCopasiObject | protected |
DataObjectSet typedef | CCopasiObject | |
DataUpdateSequence typedef | CCopasiObject | |
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
EmptyList | CCopasiContainer | static |
eOutputFlagBase enum name | CCopasiTask | |
Error | CCopasiTask | |
exponents() const | CLyapTask | inline |
FINISH enum value | CCopasiTask | |
Flag enum name | CCopasiObject | protected |
fluxMode enum value | CCopasiTask | |
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
getCallBack() const | CCopasiTask | |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
getCN() const | CCopasiObject | virtual |
getDescription() const | CCopasiTask | |
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
getKey() const | CCopasiTask | virtual |
getMethod() | CCopasiTask | |
getMethod() const | CCopasiTask | |
getObject(const CCopasiObjectName &cn) const | CCopasiContainer | virtual |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | virtual |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | virtual |
getObjectType() const | CCopasiObject | |
getOutputHandler() const | CCopasiTask | |
getOutputMode() const | CCopasiTask | inline |
getPrerequisites() const | CCopasiObject | virtual |
getProblem() | CCopasiTask | |
getProblem() const | CCopasiTask | |
getRefresh() const | CCopasiObject | virtual |
getReport() | CCopasiTask | |
getResult() const | CCopasiTask | |
getSliders() | CCopasiTask | |
getType() const | CCopasiTask | |
getUnits() const | CCopasiContainer | virtual |
getUpdateMethod() const | CCopasiObject | |
getValueObject() const | CCopasiContainer | virtual |
getValuePointer() const | CCopasiObject | virtual |
Gui enum value | CCopasiObject | protected |
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
hasUpdateMethod() const | CCopasiObject | |
INITIALIZE enum value | CCopasiTask | |
initialize(const OutputFlag &of, COutputHandler *pOutputHandler, std::ostream *pOstream) | CLyapTask | virtual |
initObjects() | CLyapTask | private |
isArray() const | CCopasiObject | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isScheduled() const | CCopasiTask | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isUpdateModel() const | CCopasiTask | |
isValidMethod(const unsigned int &method, const unsigned int *validMethods) | CCopasiTask | static |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueInt64() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
lna enum value | CCopasiTask | |
lyap enum value | CCopasiTask | |
Matrix enum value | CCopasiObject | protected |
mAverageDivergence | CLyapTask | private |
mca enum value | CCopasiTask | |
mDescription | CCopasiTask | protected |
mDoOutput | CCopasiTask | protected |
methodCallback(const C_FLOAT64 &percentage, bool onlyProgress) | CLyapTask | |
mExponents | CLyapTask | private |
mhProcess | CLyapTask | private |
mIntervalDivergence | CLyapTask | private |
mKey | CCopasiTask | protected |
mLocalExponents | CLyapTask | private |
mModelVariablesInResult | CLyapTask | private |
mNumExponentsCalculated | CLyapTask | private |
mObjects | CCopasiContainer | protected |
ModelEntity enum value | CCopasiObject | protected |
modelVariablesInResult() const | CLyapTask | |
moieties enum value | CCopasiTask | |
mOutputCounter | CCopasiTask | protected |
mpCallBack | CCopasiTask | protected |
mPercentage | CLyapTask | private |
mpInitialState | CCopasiTask | protected |
mpLyapMethod | CLyapTask | private |
mpLyapProblem | CLyapTask | private |
mpMethod | CCopasiTask | protected |
mpOutputHandler | CCopasiTask | protected |
mpProblem | CCopasiTask | protected |
mpSliders | CCopasiTask | protected |
mReport | CCopasiTask | protected |
mResult | CCopasiTask | protected |
mResultAvailable | CLyapTask | private |
mResultHasDivergence | CLyapTask | private |
mScheduled | CCopasiTask | protected |
mSumOfExponents | CLyapTask | private |
mSumOfLocalExponents | CLyapTask | private |
mType | CCopasiTask | protected |
mUpdateModel | CCopasiTask | protected |
mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
mvExpRef | CLyapTask | private |
mvLocExpRef | CLyapTask | private |
NameVector enum value | CCopasiObject | protected |
NO_OUTPUT enum value | CCopasiTask | |
NonUniqueName enum value | CCopasiObject | protected |
numberOfExponentsCalculated() const | CLyapTask | |
objectMap typedef | CCopasiContainer | |
ObjectSet typedef | CObjectInterface | |
ONLY_TIME_SERIES enum value | CCopasiTask | |
optimization enum value | CCopasiTask | |
OUTPUT enum value | CCopasiTask | |
output(const COutputInterface::Activity &activity) | CCopasiTask | virtual |
OUTPUT_AFTER enum value | CCopasiTask | |
OUTPUT_BEFORE enum value | CCopasiTask | |
OUTPUT_SE enum value | CCopasiTask | |
OUTPUT_UI enum value | CCopasiTask | |
OutputFlag enum name | CCopasiTask | |
parameterFitting enum value | CCopasiTask | |
PLOT enum value | CCopasiTask | |
print(std::ostream *ostream) const | CCopasiObject | virtual |
printResult(std::ostream *ostream) const | CLyapTask | |
process(const bool &useInitialValues) | CLyapTask | virtual |
Reference enum value | CCopasiObject | protected |
remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
REPORT enum value | CCopasiTask | |
restore() | CLyapTask | virtual |
resultAvailable() const | CLyapTask | |
resultHasDivergence() const | CLyapTask | |
Root enum value | CCopasiObject | protected |
scan enum value | CCopasiTask | |
sens enum value | CCopasiTask | |
separate(const COutputInterface::Activity &activity) | CCopasiTask | virtual |
Separator enum value | CCopasiObject | protected |
setCallBack(CProcessReport *pCallBack) | CCopasiTask | virtual |
setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
setMethodType(const int &type) | CLyapTask | virtual |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
setScheduled(const bool &scheduled) | CCopasiTask | |
setType(const Type &type) | CCopasiTask | |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
setUpdateModel(const bool &updateModel) | CCopasiTask | |
smpRenameHandler | CCopasiObject | protectedstatic |
StaticString enum value | CCopasiObject | protected |
steadyState enum value | CCopasiTask | |
STREAM enum value | CCopasiTask | |
sumOfExponents() const | CLyapTask | inline |
TIME_SERIES enum value | CCopasiTask | |
timeCourse enum value | CCopasiTask | |
tssAnalysis enum value | CCopasiTask | |
Type enum name | CCopasiTask | |
TypeName | CCopasiTask | static |
unset enum value | CCopasiTask | |
updateMatrices() | CCopasiTask | inlinevirtual |
UpdateSequence typedef | CObjectInterface | |
ValidMethods | CCopasiTask | static |
ValueBool enum value | CCopasiObject | protected |
ValueDbl enum value | CCopasiObject | protected |
ValueInt enum value | CCopasiObject | protected |
ValueInt64 enum value | CCopasiObject | protected |
ValueString enum value | CCopasiObject | protected |
Vector enum value | CCopasiObject | protected |
Warning | CCopasiTask | |
XMLType | CCopasiTask | static |
~CCopasiContainer() | CCopasiContainer | virtual |
~CCopasiObject() | CCopasiObject | virtual |
~CCopasiTask() | CCopasiTask | virtual |
~CLyapTask() | CLyapTask | |
~CObjectInterface() | CObjectInterface | inlinevirtual |