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COPASI API
4.16.103
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This is the complete list of members for CFunction, including all inherited members.
| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| addUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
| addVariable(const std::string &name, CFunctionParameter::Role usage=CFunctionParameter::VARIABLE, const CFunctionParameter::DataType &type=CFunctionParameter::FLOAT64) | CFunction | |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| Array enum value | CCopasiObject | protected |
| buildCalculationSequence() | CEvaluationTree | protected |
| buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
| calculate() | CEvaluationTree | protected |
| calcValue(const CCallParameters< C_FLOAT64 > &callParameters) | CFunction | virtual |
| calls(std::set< std::string > &list) const | CEvaluationTree | |
| CAnnotation() | CAnnotation | |
| CAnnotation(const CAnnotation &src) | CAnnotation | |
| castObject(CCopasiObject *pObject) | CAnnotation | static |
| castObject(const CCopasiObject *pObject) | CAnnotation | static |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiObject() | CCopasiObject | protected |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| CEvaluationTree(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const Type &type=Function) | CEvaluationTree | |
| CEvaluationTree(const CEvaluationTree &src, const CCopasiContainer *pParent=NULL) | CEvaluationTree | |
| CFunction(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const Type &type=Function) | CFunction | |
| CFunction(const CFunction &src, const CCopasiContainer *pParent=NULL) | CFunction | |
| clearDirectDependencies() | CCopasiObject | |
| clearRefresh() | CCopasiObject | |
| CObjectInterface() | CObjectInterface | inline |
| compile() | CEvaluationTree | virtual |
| compileNodes() | CEvaluationTree | protected |
| completeFunctionList(std::vector< CFunction * > &list, const size_t &added=0) | CFunction | static |
| Container enum value | CCopasiObject | protected |
| copy(const CEvaluationTree &src) | CEvaluationTree | static |
| create(CEvaluationTree::Type type) | CEvaluationTree | static |
| createCopy() const | CFunction | |
| createListOfParametersForMathML(std::vector< std::vector< std::string > > &env) | CFunction | |
| DataModel enum value | CCopasiObject | protected |
| DataObjectSet typedef | CCopasiObject | |
| DataUpdateSequence typedef | CCopasiObject | |
| dependsOn(const C_FLOAT64 *parameter, const CCallParameters< C_FLOAT64 > &callParameters) const | CFunction | virtual |
| CEvaluationTree::dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
| dependsOnTree(const std::string &name) const | CEvaluationTree | |
| EmptyList | CCopasiContainer | static |
| Expression enum value | CEvaluationTree | |
| Flag enum name | CCopasiObject | protected |
| fromAST(const ASTNode *pASTNode) | CEvaluationTree | static |
| Function enum value | CEvaluationTree | |
| getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
| getCN() const | CCopasiObject | virtual |
| getDeletedObjects() const | CEvaluationTree | |
| getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
| getErrorPosition() const | CEvaluationTree | |
| getInfix() const | CEvaluationTree | |
| getKey() const | CFunction | virtual |
| getMiriamAnnotation() const | CAnnotation | |
| getNodeList() const | CEvaluationTree | |
| getNotes() const | CAnnotation | |
| getObject(const CCopasiObjectName &cn) const | CCopasiContainer | virtual |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | virtual |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| getObjects() const | CCopasiContainer | virtual |
| getObjectType() const | CCopasiObject | |
| getPrerequisites() const | CCopasiObject | virtual |
| getRefresh() const | CCopasiObject | virtual |
| getRoot() | CEvaluationTree | |
| getRoot() const | CEvaluationTree | |
| getSBMLId() const | CFunction | |
| getType() const | CEvaluationTree | |
| getUnits() const | CCopasiContainer | virtual |
| getUnsupportedAnnotations() | CAnnotation | |
| getUnsupportedAnnotations() const | CAnnotation | |
| getUpdateMethod() const | CCopasiObject | |
| getValueObject() const | CCopasiContainer | virtual |
| getValuePointer() const | CCopasiObject | virtual |
| getVariableIndex(const std::string &name) const | CFunction | virtual |
| getVariables() | CFunction | |
| getVariables() const | CFunction | |
| getVariableValue(const size_t &index) const | CFunction | virtual |
| Gui enum value | CCopasiObject | protected |
| hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
| hasCircularDependency() const | CEvaluationTree | |
| hasDiscontinuity() const | CEvaluationTree | |
| hasUpdateMethod() const | CCopasiObject | |
| initVariables() | CFunction | protected |
| isArray() const | CCopasiObject | |
| isBoolean() const | CEvaluationTree | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
| isReference() const | CCopasiObject | |
| isReversible() const | CFunction | |
| isRoot() const | CCopasiObject | |
| isSeparator() const | CCopasiObject | |
| isStaticString() const | CCopasiObject | |
| isSuitable(const size_t noSubstrates, const size_t noProducts, const TriLogic reversible) | CFunction | |
| isUsable() const | CEvaluationTree | |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueInt64() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH) | CFunction | virtual |
| MassAction enum value | CEvaluationTree | |
| MathExpression enum value | CEvaluationTree | |
| Matrix enum value | CCopasiObject | protected |
| mCalculationSequence | CEvaluationTree | protected |
| mCallParametersBegin | CFunction | private |
| mInfix | CEvaluationTree | protected |
| mKey | CAnnotation | protected |
| mObjects | CCopasiContainer | protected |
| ModelEntity enum value | CCopasiObject | protected |
| mpNodeList | CEvaluationTree | protected |
| mpRoot | CEvaluationTree | protected |
| mReversible | CFunction | private |
| mSBMLId | CFunction | private |
| mType | CEvaluationTree | protected |
| mUsable | CEvaluationTree | protected |
| mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
| mValue | CEvaluationTree | protected |
| mVariables | CFunction | private |
| NameVector enum value | CCopasiObject | protected |
| NonUniqueName enum value | CCopasiObject | protected |
| objectMap typedef | CCopasiContainer | |
| ObjectSet typedef | CObjectInterface | |
| operator<<(std::ostream &os, const CFunction &f) | CFunction | friend |
| operator==(const CFunction &rhs) const | CFunction | |
| CEvaluationTree::operator==(const CEvaluationTree &rhs) const | CEvaluationTree | |
| CAnnotation::operator==(const CAnnotation &rhs) const | CAnnotation | |
| parse() | CEvaluationTree | protected |
| PreDefined enum value | CEvaluationTree | |
| print(std::ostream *ostream) const | CCopasiObject | virtual |
| Reference enum value | CCopasiObject | protected |
| remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| removeUnsupportedAnnotation(const std::string &name) | CAnnotation | |
| replaceUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
| Root enum value | CCopasiObject | protected |
| Separator enum value | CCopasiObject | protected |
| setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
| setInfix(const std::string &infix) | CFunction | virtual |
| setInfix(const std::string &infix, bool compile) | CFunction | virtual |
| setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
| setNotes(const std::string ¬es) | CAnnotation | |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
| setReversible(const TriLogic &reversible) | CFunction | |
| setRoot(CEvaluationNode *pRootNode) | CEvaluationTree | virtual |
| setSBMLId(const std::string &id) | CFunction | |
| setTree(const ASTNode &pRootNode) | CEvaluationTree | |
| setType(const CEvaluationTree::Type &type) | CEvaluationTree | protected |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
| smpRenameHandler | CCopasiObject | protectedstatic |
| splitFunction(const CEvaluationNode *node, const std::string &name1, const std::string &name2) const | CFunction | |
| StaticString enum value | CCopasiObject | protected |
| toAST(const CCopasiDataModel *pDataModel) const | CEvaluationTree | virtual |
| Type enum name | CEvaluationTree | |
| TypeName | CEvaluationTree | static |
| UnsupportedAnnotation typedef | CAnnotation | |
| UpdateSequence typedef | CObjectInterface | |
| updateTree() | CEvaluationTree | |
| UserDefined enum value | CEvaluationTree | |
| ValueBool enum value | CCopasiObject | protected |
| ValueDbl enum value | CCopasiObject | protected |
| ValueInt enum value | CCopasiObject | protected |
| ValueInt64 enum value | CCopasiObject | protected |
| ValueString enum value | CCopasiObject | protected |
| Vector enum value | CCopasiObject | protected |
| writeMathML(std::ostream &out, size_t l=0) const | CFunction | virtual |
| writeMathML(const std::vector< std::vector< std::string > > &variables, bool expand=true, bool fullExpand=true) const | CFunction | virtual |
| XMLType | CEvaluationTree | static |
| ~CAnnotation() | CAnnotation | virtual |
| ~CCopasiContainer() | CCopasiContainer | virtual |
| ~CCopasiObject() | CCopasiObject | virtual |
| ~CEvaluationTree() | CEvaluationTree | virtual |
| ~CFunction() | CFunction | virtual |
| ~CObjectInterface() | CObjectInterface | inlinevirtual |
1.8.6