COPASI API
4.16.103
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This is the complete list of members for CFunction, including all inherited members.
add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
addVariable(const std::string &name, CFunctionParameter::Role usage=CFunctionParameter::VARIABLE, const CFunctionParameter::DataType &type=CFunctionParameter::FLOAT64) | CFunction | |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
Array enum value | CCopasiObject | protected |
buildCalculationSequence() | CEvaluationTree | protected |
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
calculate() | CEvaluationTree | protected |
calcValue(const CCallParameters< C_FLOAT64 > &callParameters) | CFunction | virtual |
calls(std::set< std::string > &list) const | CEvaluationTree | |
CAnnotation() | CAnnotation | |
CAnnotation(const CAnnotation &src) | CAnnotation | |
castObject(CCopasiObject *pObject) | CAnnotation | static |
castObject(const CCopasiObject *pObject) | CAnnotation | static |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiObject() | CCopasiObject | protected |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
CEvaluationTree(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const Type &type=Function) | CEvaluationTree | |
CEvaluationTree(const CEvaluationTree &src, const CCopasiContainer *pParent=NULL) | CEvaluationTree | |
CFunction(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const Type &type=Function) | CFunction | |
CFunction(const CFunction &src, const CCopasiContainer *pParent=NULL) | CFunction | |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
CObjectInterface() | CObjectInterface | inline |
compile() | CEvaluationTree | virtual |
compileNodes() | CEvaluationTree | protected |
completeFunctionList(std::vector< CFunction * > &list, const size_t &added=0) | CFunction | static |
Container enum value | CCopasiObject | protected |
copy(const CEvaluationTree &src) | CEvaluationTree | static |
create(CEvaluationTree::Type type) | CEvaluationTree | static |
createCopy() const | CFunction | |
createListOfParametersForMathML(std::vector< std::vector< std::string > > &env) | CFunction | |
DataModel enum value | CCopasiObject | protected |
DataObjectSet typedef | CCopasiObject | |
DataUpdateSequence typedef | CCopasiObject | |
dependsOn(const C_FLOAT64 *parameter, const CCallParameters< C_FLOAT64 > &callParameters) const | CFunction | virtual |
CEvaluationTree::dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
dependsOnTree(const std::string &name) const | CEvaluationTree | |
EmptyList | CCopasiContainer | static |
Expression enum value | CEvaluationTree | |
Flag enum name | CCopasiObject | protected |
fromAST(const ASTNode *pASTNode) | CEvaluationTree | static |
Function enum value | CEvaluationTree | |
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
getCN() const | CCopasiObject | virtual |
getDeletedObjects() const | CEvaluationTree | |
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
getErrorPosition() const | CEvaluationTree | |
getInfix() const | CEvaluationTree | |
getKey() const | CFunction | virtual |
getMiriamAnnotation() const | CAnnotation | |
getNodeList() const | CEvaluationTree | |
getNotes() const | CAnnotation | |
getObject(const CCopasiObjectName &cn) const | CCopasiContainer | virtual |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | virtual |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | virtual |
getObjectType() const | CCopasiObject | |
getPrerequisites() const | CCopasiObject | virtual |
getRefresh() const | CCopasiObject | virtual |
getRoot() | CEvaluationTree | |
getRoot() const | CEvaluationTree | |
getSBMLId() const | CFunction | |
getType() const | CEvaluationTree | |
getUnits() const | CCopasiContainer | virtual |
getUnsupportedAnnotations() | CAnnotation | |
getUnsupportedAnnotations() const | CAnnotation | |
getUpdateMethod() const | CCopasiObject | |
getValueObject() const | CCopasiContainer | virtual |
getValuePointer() const | CCopasiObject | virtual |
getVariableIndex(const std::string &name) const | CFunction | virtual |
getVariables() | CFunction | |
getVariables() const | CFunction | |
getVariableValue(const size_t &index) const | CFunction | virtual |
Gui enum value | CCopasiObject | protected |
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
hasCircularDependency() const | CEvaluationTree | |
hasDiscontinuity() const | CEvaluationTree | |
hasUpdateMethod() const | CCopasiObject | |
initVariables() | CFunction | protected |
isArray() const | CCopasiObject | |
isBoolean() const | CEvaluationTree | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
isReference() const | CCopasiObject | |
isReversible() const | CFunction | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isSuitable(const size_t noSubstrates, const size_t noProducts, const TriLogic reversible) | CFunction | |
isUsable() const | CEvaluationTree | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueInt64() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH) | CFunction | virtual |
MassAction enum value | CEvaluationTree | |
MathExpression enum value | CEvaluationTree | |
Matrix enum value | CCopasiObject | protected |
mCalculationSequence | CEvaluationTree | protected |
mCallParametersBegin | CFunction | private |
mInfix | CEvaluationTree | protected |
mKey | CAnnotation | protected |
mObjects | CCopasiContainer | protected |
ModelEntity enum value | CCopasiObject | protected |
mpNodeList | CEvaluationTree | protected |
mpRoot | CEvaluationTree | protected |
mReversible | CFunction | private |
mSBMLId | CFunction | private |
mType | CEvaluationTree | protected |
mUsable | CEvaluationTree | protected |
mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
mValue | CEvaluationTree | protected |
mVariables | CFunction | private |
NameVector enum value | CCopasiObject | protected |
NonUniqueName enum value | CCopasiObject | protected |
objectMap typedef | CCopasiContainer | |
ObjectSet typedef | CObjectInterface | |
operator<<(std::ostream &os, const CFunction &f) | CFunction | friend |
operator==(const CFunction &rhs) const | CFunction | |
CEvaluationTree::operator==(const CEvaluationTree &rhs) const | CEvaluationTree | |
CAnnotation::operator==(const CAnnotation &rhs) const | CAnnotation | |
parse() | CEvaluationTree | protected |
PreDefined enum value | CEvaluationTree | |
print(std::ostream *ostream) const | CCopasiObject | virtual |
Reference enum value | CCopasiObject | protected |
remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
removeUnsupportedAnnotation(const std::string &name) | CAnnotation | |
replaceUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
Root enum value | CCopasiObject | protected |
Separator enum value | CCopasiObject | protected |
setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
setInfix(const std::string &infix) | CFunction | virtual |
setInfix(const std::string &infix, bool compile) | CFunction | virtual |
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
setNotes(const std::string ¬es) | CAnnotation | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
setReversible(const TriLogic &reversible) | CFunction | |
setRoot(CEvaluationNode *pRootNode) | CEvaluationTree | virtual |
setSBMLId(const std::string &id) | CFunction | |
setTree(const ASTNode &pRootNode) | CEvaluationTree | |
setType(const CEvaluationTree::Type &type) | CEvaluationTree | protected |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
smpRenameHandler | CCopasiObject | protectedstatic |
splitFunction(const CEvaluationNode *node, const std::string &name1, const std::string &name2) const | CFunction | |
StaticString enum value | CCopasiObject | protected |
toAST(const CCopasiDataModel *pDataModel) const | CEvaluationTree | virtual |
Type enum name | CEvaluationTree | |
TypeName | CEvaluationTree | static |
UnsupportedAnnotation typedef | CAnnotation | |
UpdateSequence typedef | CObjectInterface | |
updateTree() | CEvaluationTree | |
UserDefined enum value | CEvaluationTree | |
ValueBool enum value | CCopasiObject | protected |
ValueDbl enum value | CCopasiObject | protected |
ValueInt enum value | CCopasiObject | protected |
ValueInt64 enum value | CCopasiObject | protected |
ValueString enum value | CCopasiObject | protected |
Vector enum value | CCopasiObject | protected |
writeMathML(std::ostream &out, size_t l=0) const | CFunction | virtual |
writeMathML(const std::vector< std::vector< std::string > > &variables, bool expand=true, bool fullExpand=true) const | CFunction | virtual |
XMLType | CEvaluationTree | static |
~CAnnotation() | CAnnotation | virtual |
~CCopasiContainer() | CCopasiContainer | virtual |
~CCopasiObject() | CCopasiObject | virtual |
~CEvaluationTree() | CEvaluationTree | virtual |
~CFunction() | CFunction | virtual |
~CObjectInterface() | CObjectInterface | inlinevirtual |