CDataModel Member List

This is the complete list of members for CDataModel, including all inherited members.

__SIZE enum value	CDataObject
Activity enum name	COutputInterface
add(CDataObject *pObject, const bool &adopt=true)	CDataContainer	virtual
addCopasiFileToArchive(LIBCOMBINE_CPP_NAMESPACE_QUALIFIER CombineArchive *archive, const std::string &targetName="./copasi/model.cps", CProcessReport *pProcessReport=NULL)	CDataModel
addDefaultReports()	CDataModel
addDefaultTasks()	CDataModel
addInterface(COutputInterface *pInterface)	COutputHandler	virtual
addIssue(const CIssue &issue)	CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addModel(const std::string &fileName, CProcessReport *pProcessReport=NULL)	CDataModel
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addReference(const CDataContainer *pReference)	CDataObject
addReport(const CTaskEnum::Task &taskType)	CDataModel
addTask(const CTaskEnum::Task &taskType)	CDataModel
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
AFTER enum value	COutputInterface
appendDeletedDependentData(CUndoData &undoData) const	CDataContainer	virtual
appendDependentTasks(ObjectSet candidates, DataObjectSet &dependentTasks) const	CDataModel
applyData(const CData &data, CUndoData::CChangeSet &changes)	CDataModel	virtual
applyData(const CUndoData &data)	CDataModel
applyUpdateSequence()	COutputHandler	protected
Array enum value	CDataObject
autoSave()	CDataModel
BEFORE enum value	COutputInterface
calculateValue() override	CDataObject	virtual
CDataContainer()	CDataContainer	private
CDataContainer(const CDataContainer &src)	CDataContainer	protected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)	CDataContainer
CDataModel(const bool withGUI=false)	CDataModel
CDataModel(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", bool withGUI=false)	CDataModel
CDataModel(const CDataModel &src, const CDataContainer *pParent)	CDataModel
CDataObject()	CDataObject	protected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataObject	protected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)	CDataObject
changed(const bool &changed=true)	CDataModel
changeModelParameter(CDataObject *element, double value)	CDataModel	static
close()	COutputInterface	virtual
CObjectInterface()	CObjectInterface
CObjectInterface(const CObjectInterface &src)	CObjectInterface
commonAfterLoad(CProcessReport *pProcessReport, const bool &deleteOldData)	CDataModel	protected
compile(CObjectInterface::ContainerList listOfContainer)	COutputHandler	virtual
compileUpdateSequence(const CObjectInterface::ContainerList &listOfContainer)	COutputHandler	protected
Container enum value	CDataObject
ContainerList typedef	CObjectInterface
contentType(std::istream &content)	CDataModel	static
ContentType enum name	CDataModel
ContentTypeNames	CDataModel	static
copyExperimentalDataTo(const std::string &path)	CDataModel
COutputHandler()	COutputHandler
COutputHandler(const COutputHandler &src)	COutputHandler
COutputInterface()	COutputInterface
COutputInterface(const COutputInterface &src)	COutputInterface
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const override	CDataContainer	virtual
CUndoObjectInterface()	CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)	CUndoObjectInterface
DataModel enum value	CDataObject
DataObject(const CObjectInterface *pInterface)	CObjectInterface	static
DataObjectSet typedef	CDataObject
deleteOldData()	CDataModel
destruct() override	CDataObject	virtual
DisplayName enum value	CDataObject
DURING enum value	COutputInterface
EmptyList	CDataContainer	static
exportCombineArchive(std::string fileName, bool includeCOPASI=true, bool includeSBML=true, bool includeData=true, bool includeSEDML=false, bool overwriteFile=false, CProcessReport *pProcessReport=NULL, int sbmlLevel=2, int sbmlVersion=4, int sedmlLevel=1, int sedmlVersion=4)	CDataModel
exportMathModel(const std::string &fileName, CProcessReport *pProcessReport, const std::string &filter, bool overwriteFile=false)	CDataModel
exportMathModelToString(CProcessReport *pProcessReport, const std::string &filter)	CDataModel
exportSBML(const std::string &fileName, bool overwriteFile=false, int sbmlLevel=2, int sbmlVersion=1, bool exportIncomplete=false, bool exportCOPASIMIRIAM=true, CProcessReport *pProcessReport=NULL)	CDataModel
exportSBMLToString(CProcessReport *pProcessReport, int sbmlLevel, int sbmlVersion)	CDataModel
exportSEDML(const std::string &fileName, bool overwriteFile=false, int sedmlLevel=1, int sedmlVersion=4, bool exportIncomplete=false, bool exportCOPASIMIRIAM=true, CProcessReport *pProcessReport=NULL)	CDataModel
exportSEDMLToString(CProcessReport *pProcessReport, int sedmlLevel, int sedmlVersion, const std::string &modelLocation="model.xml", const XMLNamespaces *pAdditionalNamespaces=NULL)	CDataModel
exportShinyArchive(std::string fileName, bool includeCOPASI=true, bool includeData=true, bool overwriteFile=false, CProcessReport *pProcessReport=NULL)	CDataModel
findObjectByDisplayName(const std::string &displayString) const	CDataModel
finish()	COutputHandler	virtual
Flag enum name	CDataObject
fromData(const CData &data, CUndoObjectInterface *pParent)	CDataModel	static
generateUuid()	CUndoObjectInterface
getChildObjectUnits(const CDataObject *pObject) const	CDataContainer	virtual
getCN() const override	CDataObject	virtual
getContentType() const	CDataModel
getCopasi2SBMLMap()	CDataModel
getCopasi2SEDMLMap()	CDataModel
getCurrentSBMLDocument()	CDataModel
getCurrentSEDMLDocument()	CDataModel
getDataObject() const override	CDataObject	virtual
getDefaultFileName(const std::string &suffix) const	CDataModel
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const	CDataContainer
getFileName() const	CDataModel
getGUI()	CDataModel
getIndex(const CDataObject *pObject) const	CDataContainer	virtual
getInterfaces() const	COutputHandler
getKey() const	CDataObject	virtual
getListOfLayouts()	CDataModel
getListOfLayouts() const	CDataModel
getModel()	CDataModel
getModel() const	CDataModel
getObject(const CCommonName &cn) const override	CDataContainer	virtual
getObjectAncestor(const std::string &type) const	CDataObject
getObjectDataModel() const	CDataObject
getObjectDisplayName() const override	CDataObject	virtual
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)	CObjectInterface	static
getObjectFromCN(const CCommonName &cn) const	CDataObject
getObjectName() const	CDataObject
getObjectParent() const	CDataObject
CDataContainer::getObjects() const	CDataContainer	virtual
CDataContainer::getObjects()	CDataContainer	virtual
COutputHandler::getObjects() const	COutputInterface	virtual
getObjectType() const	CDataObject
getPlotDefinitionList() const	CDataModel
getPlotDefinitionList()	CDataModel
getPrerequisites() const override	CDataObject	virtual
getReferenceDirectory() const	CDataModel
getReportDefinitionList() const	CDataModel
getReportDefinitionList()	CDataModel
getSBMLFileName() const	CDataModel
getSEDMLFileName() const	CDataModel
getTaskList()	CDataModel
getTaskList() const	CDataModel
getUndoStack()	CDataModel
getUnits() const override	CDataContainer	virtual
getUuid() const	CUndoObjectInterface
getValidity() const override	CDataObject	virtual
getValueObject() const override	CDataContainer	virtual
getValuePointer() const override	CDataObject	virtual
Gui enum value	CDataObject
hasFlag(const Flag &flag) const	CDataObject
importSBML(const std::string &fileName, CProcessReport *pProcessReport=NULL, const bool &deleteOldData=true)	CDataModel
importSBMLFromString(const std::string &sbmlDocumentText, CProcessReport *pProcessReport=NULL, const bool &deleteOldData=true)	CDataModel
importSEDML(const std::string &fileName, CProcessReport *pProcessReport=NULL, const bool &deleteOldData=true, const SedmlImportOptions *pOptions=NULL)	CDataModel
importSEDMLFromString(const std::string &sedmlDocumentText, std::string referenceDir="", CProcessReport *pProcessReport=NULL, const bool &deleteOldData=true, const SedmlImportOptions *pOptions=NULL)	CDataModel
initObjects()	CDataContainer	protected
insert(const CData &data) override	CDataContainer	virtual
isChanged() const	CDataModel
isMaster() const	COutputHandler
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override	CDataObject	virtual
loadFromFile(const std::string &fileName, CProcessReport *pProcessReport=NULL, const bool &deleteOldData=true)	CDataModel
loadFromString(const std::string &content, std::string referenceDir="", CProcessReport *pProcessReport=NULL, const bool &deleteOldData=true)	CDataModel
loadModel(std::istream &in, const std::string &pwd, CProcessReport *pProcessReport, const bool &deleteOldData=true)	CDataModel
loadModel(const std::string &fileName, CProcessReport *pProcessReport, const bool &deleteOldData=true)	CDataModel
loadModelParameterSets(const std::string &fileName, CProcessReport *pProcessReport=NULL)	CDataModel
mAggregateValidity	CDataObject	private
Matrix enum value	CDataObject
mData	CDataModel	protected
mInterfaces	COutputHandler	protected
mLastAddedObjects	CDataModel
mNeedToSaveExperimentalData	CDataModel	protected
mObjectDisplayName	CDataObject	mutableprivate
mObjectFlag	CDataObject	private
mObjectName	CDataObject	private
CDataContainer::mObjects	CDataContainer	protected
COutputHandler::mObjects	COutputInterface	protected
mObjectType	CDataObject	private
ModelEntity enum value	CDataObject
mOldData	CDataModel	protected
MONITORING enum value	COutputInterface
mpContainer	COutputHandler	protected
mpInfo	CDataModel	protected
mpMaster	COutputHandler	protected
mpObjectDisplayName	CDataObject	mutableprivate
mpObjectName	CDataObject	mutableprivate
mpObjectParent	CDataObject	private
mPrerequisits	CDataObject	protected
mpUuid	CUndoObjectInterface	private
mReferencedValidities	CDataObject	private
mReferences	CDataObject	protected
mTempFolders	CDataModel	protected
mUpdateSequence	COutputHandler	protected
mUuidLocked	CUndoObjectInterface	private
mValidity	CObjectInterface	mutableprotected
NameVector enum value	CDataObject
newModel(CProcessReport *pProcessReport, const bool &deleteOldData)	CDataModel
NonUniqueName enum value	CDataObject
objectMap typedef	CDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)	CDataContainer
ObjectSet typedef	CObjectInterface
openCombineArchive(const std::string &fileName, CProcessReport *pProcessReport=NULL, const bool &deleteOldData=true, const SedmlImportOptions *pOptions=NULL)	CDataModel
output(const Activity &activity)	COutputHandler	virtual
pOldMetabolites	CDataModel
popData()	CDataModel	protected
prerequisitsContains(const DataObjectSet &objects) const	CDataObject
print(std::ostream *ostream) const override	CDataObject	virtual
pushData()	CDataModel	protected
recordData(const CUndoData &data)	CDataModel
Reference enum value	CDataObject
refreshAggregateValidity()	CDataObject	private
remove(CDataObject *pObject)	CDataContainer	virtual
removeInterface(COutputInterface *pInterface)	COutputHandler	virtual
removeIssue(const CIssue &issue)	CDataObject
removeLayout(const std::string &key)	CDataModel
removeReference(const CDataContainer *pReference)	CDataObject
removeSBMLIdFromFunctions()	CDataModel	protected
reparameterizeFromIniFile(const std::string &fileName)	CDataModel
replaceCnInGroup(CModelParameter *pParam, const std::string &oldCn, const std::string &newCN)	CDataModel	protected
Root enum value	CDataObject
sanitizeObjectName(std::string &name)	CDataObject	static
saveModel(const std::string &fileName, CProcessReport *pProcessReport, bool overwriteFile=false, const bool &autoSave=false)	CDataModel
saveModelParameterSets(const std::string &fileName)	CDataModel
saveModelToString(CProcessReport *pProcessReport=NULL)	CDataModel
separate(const Activity &activity)	COutputHandler	virtual
Separator enum value	CDataObject
setFileName(const std::string &fileName)	CDataModel
setMaster(COutputHandler *pMaster)	COutputHandler
setObjectName(const std::string &name)	CDataObject
setObjectParent(const CDataContainer *pParent)	CDataObject	virtual
setSBMLFileName(const std::string &fileName)	CDataModel
setSEDMLFileName(const std::string &fileName)	CDataModel
setUuid(const xg::Guid &uuid)	CUndoObjectInterface
setUuid(const std::string &uuid)	CUndoObjectInterface
StaticString enum value	CDataObject
toData() const	CDataModel	virtual
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)	CUndoObjectInterface	virtual
validityChanged(const CValidity &changedValidity) override	CDataObject	virtual
validityRemoved(const CValidity &changedValidity)	CDataObject
ValueBool enum value	CDataObject
ValueDbl enum value	CDataObject
ValueInt enum value	CDataObject
ValueInt64 enum value	CDataObject
ValueString enum value	CDataObject
Vector enum value	CDataObject
~CDataContainer()	CDataContainer	virtual
~CDataModel()	CDataModel	virtual
~CDataObject()	CDataObject	virtual
~CObjectInterface()	CObjectInterface	virtual
~COutputHandler()	COutputHandler	virtual
~COutputInterface()	COutputInterface	virtual
~CUndoObjectInterface()	CUndoObjectInterface	virtual