COPASI API  4.40.278
CCompartment Member List

This is the complete list of members for CCompartment, including all inherited members.

__SIZE enum valueCDataObject
add(CDataObject *pObject, const bool &adopt=true)CDataContainervirtual
addIssue(const CIssue &issue)CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addMetabolite(CMetab *metabolite)CCompartment
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addReference(const CDataContainer *pReference)CDataObject
addUnsupportedAnnotation(const std::string &name, const std::string &xml)CAnnotation
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
allocateMiriamInfo(CDataContainer *pParent)CAnnotationstatic
appendDeletedDependentData(CUndoData &undoData) constCDataContainervirtual
applyData(const CData &data, CUndoData::CChangeSet &changes)CCompartmentvirtual
Array enum valueCDataObject
calculate()CModelEntityvirtual
calculateValue() overrideCDataObjectvirtual
CAnnotation()CAnnotation
CAnnotation(const CAnnotation &src)CAnnotation
castObject(CDataObject *pObject)CAnnotationstatic
castObject(const CDataObject *pObject)CAnnotationstatic
CCompartment(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT)CCompartment
CCompartment(const CCompartment &src, const CDataContainer *pParent)CCompartment
CDataContainer()CDataContainerprivate
CDataContainer(const CDataContainer &src)CDataContainerprotected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)CDataContainer
CDataObject()CDataObjectprotected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataObjectprotected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)CDataObject
cleanup()CCompartment
CModelEntity(const CModelEntity &src)CModelEntityprotected
CModelEntity(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT, const std::string &type="ModelEntity", const CFlags< Flag > &flag=CFlags< Flag >::None)CModelEntity
CModelEntity(const CModelEntity &src, const CDataContainer *pParent)CModelEntity
CObjectInterface()CObjectInterface
CObjectInterface(const CObjectInterface &src)CObjectInterface
compile()CModelEntityvirtual
Container enum valueCDataObject
Container2InfoCAnnotationprivatestatic
ContainerList typedefCObjectInterface
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) constCCompartmentvirtual
CUndoObjectInterface()CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)CUndoObjectInterface
DataModel enum valueCDataObject
DataObject(const CObjectInterface *pInterface)CObjectInterfacestatic
DataObjectSet typedefCDataObject
destruct() overrideCDataObjectvirtual
DisplayName enum valueCDataObject
EmptyListCDataContainerstatic
Flag enum nameCDataObject
freeMiriamInfo(CDataContainer *pParent)CAnnotationstatic
fromData(const CData &data, CUndoObjectInterface *pParent)CCompartmentstatic
generateUuid()CUndoObjectInterface
getChildObjectUnits(const CDataObject *pObject) const overrideCModelEntityvirtual
getCN() const overrideCDataObjectvirtual
getDataObject() const overrideCDataObjectvirtual
getDefaultNoiseExpression() constCModelEntity
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) constCDataContainer
getDimensionality() constCCompartment
getExpression() constCModelEntity
getExpressionPtr() constCModelEntity
getExpressionPtr()CModelEntity
getIndex(const CDataObject *pObject) constCDataContainervirtual
getInitialExpression() constCModelEntity
getInitialExpressionPtr() constCModelEntity
getInitialExpressionPtr()CModelEntity
getInitialValue() constCModelEntity
getInitialValueReference() constCModelEntity
getKey() const overrideCModelEntityvirtual
getMetabolites()CCompartment
getMetabolites() constCCompartment
getMiriamAnnotation() constCAnnotation
getModel() constCModelEntity
getNoiseExpression() constCModelEntity
getNoiseExpressionPtr() constCModelEntity
getNoiseExpressionPtr()CModelEntity
getNoiseReference() constCModelEntity
getNotes() constCAnnotation
getObject(const CCommonName &cn) const overrideCDataContainervirtual
getObjectAncestor(const std::string &type) constCDataObject
getObjectDataModel() constCDataObject
getObjectDisplayName() const overrideCDataObjectvirtual
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)CObjectInterfacestatic
getObjectFromCN(const CCommonName &cn) constCDataObject
getObjectName() constCDataObject
getObjectParent() constCDataObject
getObjects() constCDataContainervirtual
getObjects()CDataContainervirtual
getObjectType() constCDataObject
getPrerequisites() const overrideCDataObjectvirtual
getRate() constCModelEntity
getRateReference() constCModelEntity
getSBMLId() constCModelEntity
getStatus() constCModelEntity
getUnitExpression() constCModelEntityvirtual
getUnits() constCCompartmentvirtual
getUnsupportedAnnotations()CAnnotation
getUnsupportedAnnotations() constCAnnotation
getUuid() constCUndoObjectInterface
getValidity() const overrideCDataObjectvirtual
getValue() constCModelEntity
getValueObject() const overrideCModelEntityvirtual
getValuePointer() const overrideCModelEntityvirtual
getValueReference() constCModelEntity
Gui enum valueCDataObject
hasFlag(const Flag &flag) constCDataObject
hasNoise() constCModelEntity
initMiriamAnnotation(const std::string &newId)CAnnotation
initObjects()CCompartmentprivate
insert(const CData &data) overrideCDataContainervirtual
isFixed() constCModelEntityinline
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const overrideCDataObjectvirtual
isUsed() constCModelEntity
isValidXML(const std::string &xml)CAnnotationprivatestatic
load(CReadConfig &configbuffer)CCompartment
mAggregateValidityCDataObjectprivate
Matrix enum valueCDataObject
mDimensionalityCCompartmentprotected
mHasNoiseCModelEntityprotected
mIValueCModelEntityprotected
mKeyCAnnotationprotected
mMetabolitesCCompartmentprivate
mMiriamAnnotationCAnnotationprivate
mNoiseCModelEntityprotected
mNotesCAnnotationprivate
mObjectDisplayNameCDataObjectmutableprivate
mObjectFlagCDataObjectprivate
mObjectNameCDataObjectprivate
mObjectsCDataContainerprotected
mObjectTypeCDataObjectprivate
ModelEntity enum valueCDataObject
mpExpressionCModelEntityprotected
mpInitialExpressionCModelEntityprotected
mpIValueReferenceCModelEntityprotected
mpModelCModelEntitymutableprotected
mpNoiseExpressionCModelEntityprotected
mpNoiseReferenceCModelEntityprotected
mpObjectDisplayNameCDataObjectmutableprivate
mpObjectNameCDataObjectmutableprivate
mpObjectParentCDataObjectprivate
mpRateReferenceCModelEntityprotected
mPrerequisitsCDataObjectprotected
mpUuidCUndoObjectInterfaceprivate
mpValueReferenceCModelEntityprotected
mRateCModelEntityprotected
mReferencedValiditiesCDataObjectprivate
mReferencesCDataObjectprotected
mSBMLIdCModelEntitymutableprotected
mStatusCModelEntityprivate
mUnitExpressionCModelEntityprotected
mUnsupportedAnnotationsCAnnotationprivate
mUsedCModelEntityprivate
mUuidLockedCUndoObjectInterfaceprivate
mValidityCObjectInterfacemutableprotected
mValueCModelEntityprotected
mXMLIdCAnnotationprivate
NameVector enum valueCDataObject
NonUniqueName enum valueCDataObject
objectMap typedefCDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)CDataContainer
ObjectSet typedefCObjectInterface
operator<<(std::ostream &os, const CCompartment &d)CCompartmentfriend
operator==(const CAnnotation &rhs) constCAnnotation
prerequisitsContains(const DataObjectSet &objects) constCDataObject
print(std::ostream *ostream) const overrideCDataObjectvirtual
Reference enum valueCDataObject
refreshAggregateValidity()CDataObjectprivate
remove(CDataObject *pObject)CDataContainervirtual
removeIssue(const CIssue &issue)CDataObject
removeReference(const CDataContainer *pReference)CDataObject
removeUnsupportedAnnotation(const std::string &name)CAnnotation
replaceUnsupportedAnnotation(const std::string &name, const std::string &xml)CAnnotation
Root enum valueCDataObject
sanitizeObjectName(std::string &name)CDataObjectstatic
Separator enum valueCDataObject
setDimensionality(unsigned C_INT32 dim)CCompartment
setExpression(const std::string &expression)CModelEntity
setExpressionPtr(CExpression *pExpression)CModelEntity
setHasNoise(const bool &hasNoise)CModelEntity
setInitialExpression(const std::string &expression)CModelEntity
setInitialExpressionPtr(CExpression *pExpression)CModelEntity
setInitialValue(const C_FLOAT64 &initialValue)CModelEntityvirtual
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId)CAnnotation
setNoiseExpression(const std::string &expression)CModelEntity
setNoiseExpressionPtr(CExpression *pExpression)CModelEntity
setNotes(const std::string &notes)CAnnotation
setObjectName(const std::string &name)CDataObject
setObjectParent(const CDataContainer *pParent) overrideCModelEntityvirtual
setRate(const C_FLOAT64 &rate)CModelEntity
setSBMLId(const std::string &id) constCModelEntity
setStatus(const CModelEntity::Status &status)CModelEntity
setUnitExpression(std::string unitExpression)CModelEntityvirtual
setUsed(const bool &used)CModelEntity
setUuid(const xg::Guid &uuid)CUndoObjectInterface
setUuid(const std::string &uuid)CUndoObjectInterface
setValue(const C_FLOAT64 &value)CModelEntityvirtual
StaticString enum valueCDataObject
Status enum nameCModelEntity
StatusNameCModelEntitystatic
toData() constCCompartmentvirtual
UnsupportedAnnotation typedefCAnnotation
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)CUndoObjectInterfacevirtual
validityChanged(const CValidity &changedValidity) overrideCDataObjectvirtual
validityRemoved(const CValidity &changedValidity)CDataObject
ValueBool enum valueCDataObject
ValueDbl enum valueCDataObject
ValueInt enum valueCDataObject
ValueInt64 enum valueCDataObject
ValueString enum valueCDataObject
Vector enum valueCDataObject
XMLStatusCModelEntitystatic
~CAnnotation()CAnnotationvirtual
~CCompartment()CCompartmentvirtual
~CDataContainer()CDataContainervirtual
~CDataObject()CDataObjectvirtual
~CModelEntity()CModelEntity
~CObjectInterface()CObjectInterfacevirtual
~CUndoObjectInterface()CUndoObjectInterfacevirtual