add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addGroup(const std::string &name) | CCopasiParameterGroup | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addParameter(const CCopasiParameter ¶meter) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value) | CCopasiParameterGroup | inline |
addParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
Array enum value | CCopasiObject | protected |
assertGroup(const std::string &name) | CCopasiParameterGroup | |
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue) | CCopasiParameterGroup | inline |
beginIndex() const | CCopasiParameterGroup | |
beginName() const | CCopasiParameterGroup | |
BOOL enum value | CCopasiParameter | |
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
calculateStatistics() | CExperiment | |
calculateWeights() | CExperiment | |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiObject() | CCopasiObject | protected |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL) | CCopasiParameter | |
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter") | CCopasiParameter | |
CCopasiParameterGroup() | CCopasiParameterGroup | protected |
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL) | CCopasiParameterGroup | |
CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup") | CCopasiParameterGroup | |
CExperiment(const CCopasiContainer *pParent, const std::string &name="Experiment") | CExperiment | |
CExperiment(const CExperiment &src, const CCopasiContainer *pParent=NULL) | CExperiment | |
CExperiment(const CCopasiParameterGroup &group, const CCopasiContainer *pParent=NULL) | CExperiment | |
clear() | CCopasiParameterGroup | |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
CN enum value | CCopasiParameter | |
CObjectInterface() | CObjectInterface | inline |
compare(const CExperiment *lhs, const CExperiment *rhs) | CExperiment | static |
compile(const std::vector< CCopasiContainer * > listOfContainer=CCopasiContainer::EmptyList) | CExperiment | |
Container enum value | CCopasiObject | protected |
DataModel enum value | CCopasiObject | protected |
DataObjectSet typedef | CCopasiObject | |
DataUpdateSequence typedef | CCopasiObject | |
dependent enum value | CExperiment | |
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
DOUBLE enum value | CCopasiParameter | |
elevateChildren() | CExperiment | virtual |
EmptyList | CCopasiContainer | static |
endIndex() const | CCopasiParameterGroup | |
endName() const | CCopasiParameterGroup | |
EXPRESSION enum value | CCopasiParameter | |
extendedTimeSeriesSize() const | CExperiment | |
FILE enum value | CCopasiParameter | |
fixBuild55() | CExperiment | |
Flag enum name | CCopasiObject | protected |
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
getCN() const | CCopasiParameter | virtual |
getColumnNames() const | CExperiment | |
getColumnValidValueCount(CCopasiObject *const &pObject) const | CExperiment | |
getDefaultScale(const CCopasiObject *const &pObject) const | CExperiment | |
getDependentData() const | CExperiment | |
getDependentObjects() const | CExperiment | |
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
getErrorMean() const | CExperiment | |
getErrorMeanSD() const | CExperiment | |
getErrorMeanSD(CCopasiObject *const &pObject, const C_FLOAT64 &errorMean) const | CExperiment | |
getErrorSum(CCopasiObject *const &pObject) const | CExperiment | |
getExperimentType() const | CExperiment | |
getFileName() const | CExperiment | |
getFirstRow() const | CExperiment | |
getFittingPoints() const | CExperiment | |
getGroup(const std::string &name) | CCopasiParameterGroup | |
getGroup(const std::string &name) const | CCopasiParameterGroup | |
getGroup(const size_t &index) | CCopasiParameterGroup | |
getGroup(const size_t &index) const | CCopasiParameterGroup | |
getHeaderRow() const | CExperiment | |
getIndependentData() const | CExperiment | |
getIndependentObjects() const | CExperiment | |
getIndex(const std::string &name) const | CCopasiParameterGroup | |
getKey(const std::string &name) const | CCopasiParameterGroup | |
getKey(const size_t &index) const | CCopasiParameterGroup | |
CCopasiParameter::getKey() const | CCopasiParameter | virtual |
getLastRow() const | CExperiment | |
getName(const size_t &index) const | CCopasiParameterGroup | virtual |
getNormalizeWeightsPerExperiment() const | CExperiment | |
getNumColumns() const | CExperiment | |
getNumDataRows() const | CExperiment | |
getObject(const CCopasiObjectName &cn) const | CCopasiParameterGroup | virtual |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiParameter | virtual |
getObjectiveValue() const | CExperiment | |
getObjectiveValue(CCopasiObject *const &pObject) const | CExperiment | |
getObjectMap() | CExperiment | |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | virtual |
getObjectType() const | CCopasiObject | |
getParameter(const std::string &name) | CCopasiParameterGroup | |
getParameter(const std::string &name) const | CCopasiParameterGroup | |
getParameter(const size_t &index) | CCopasiParameterGroup | |
getParameter(const size_t &index) const | CCopasiParameterGroup | |
getPrerequisites() const | CCopasiObject | virtual |
getRefresh() const | CCopasiObject | virtual |
getRMS() const | CExperiment | |
getRMS(CCopasiObject *const &pObject) const | CExperiment | |
getSeparator() const | CExperiment | |
getTimeData() const | CExperiment | |
getType(const std::string &name) const | CCopasiParameterGroup | |
getType(const size_t &index) const | CCopasiParameterGroup | |
CCopasiParameter::getType() const | CCopasiParameter | |
getUniqueParameterName(const CCopasiParameter *pParameter) const | CCopasiParameterGroup | |
getUnits() const | CCopasiContainer | virtual |
getUpdateMethod() const | CCopasiObject | |
getValue(const std::string &name) const | CCopasiParameterGroup | |
getValue(const size_t &index) const | CCopasiParameterGroup | |
getValue(const std::string &name) | CCopasiParameterGroup | |
getValue(const size_t &index) | CCopasiParameterGroup | |
CCopasiParameter::getValue() const | CCopasiParameter | |
CCopasiParameter::getValue() | CCopasiParameter | |
getValueObject() const | CCopasiContainer | virtual |
getValuePointer() const | CCopasiParameter | virtual |
getValueReference() const | CCopasiParameter | |
getWeightMethod() const | CExperiment | |
GROUP enum value | CCopasiParameter | |
guessColumnNumber() const | CExperiment | |
Gui enum value | CCopasiObject | protected |
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
hasUpdateMethod() const | CCopasiObject | |
ignore enum value | CExperiment | |
independent enum value | CExperiment | |
index_iterator typedef | CCopasiParameterGroup | |
initExtendedTimeSeries(size_t s) | CExperiment | |
initializeParameter() | CExperiment | private |
initializeScalingMatrix() | CExperiment | private |
initObjects() | CCopasiContainer | protected |
INT enum value | CCopasiParameter | |
INVALID enum value | CCopasiParameter | |
isArray() const | CCopasiObject | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isRowOriented() const | CExperiment | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isValidValue(const C_FLOAT64 &value) const | CCopasiParameter | |
isValidValue(const C_INT32 &value) const | CCopasiParameter | |
isValidValue(const unsigned C_INT32 &value) const | CCopasiParameter | |
isValidValue(const bool &value) const | CCopasiParameter | |
isValidValue(const std::string &value) const | CCopasiParameter | |
isValidValue(const CCopasiObjectName &value) const | CCopasiParameter | |
isValidValue(const std::vector< CCopasiParameter * > &value) const | CCopasiParameter | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueInt64() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
KEY enum value | CCopasiParameter | |
Matrix enum value | CCopasiObject | protected |
mColumnName | CExperiment | private |
mColumnObjectiveValue | CExperiment | private |
mColumnRMS | CExperiment | private |
mColumnScale | CExperiment | private |
mColumnValidValueCount | CExperiment | private |
mDataDependent | CExperiment | private |
mDataIndependent | CExperiment | private |
mDataTime | CExperiment | private |
mDefaultColumnScale | CExperiment | private |
mDependentObjects | CExperiment | private |
mDependentValues | CExperiment | private |
MEAN enum value | CExperiment | |
MEAN_SQUARE enum value | CExperiment | |
mExtendedTimeSeries | CExperiment | private |
mExtendedTimeSeriesSize | CExperiment | private |
mFittingPoints | CExperiment | private |
mIndependentObjects | CExperiment | private |
mIndependentUpdateMethods | CExperiment | private |
mIndependentValues | CExperiment | private |
mKey | CCopasiParameter | protected |
mMean | CExperiment | private |
mMeans | CExperiment | private |
mMeanSD | CExperiment | private |
mMissingData | CExperiment | private |
mNumDataRows | CExperiment | private |
mObjectiveValue | CExperiment | private |
mObjects | CCopasiContainer | protected |
ModelEntity enum value | CCopasiObject | protected |
mpDataDependentCalculated | CExperiment | private |
mpFileName | CExperiment | private |
mpFirstRow | CExperiment | private |
mpHeaderRow | CExperiment | private |
mpLastRow | CExperiment | private |
mpNormalizeWeightsPerExperiment | CExperiment | private |
mpNumColumns | CExperiment | private |
mpObjectMap | CExperiment | private |
mpRowOriented | CExperiment | private |
mpSeparator | CExperiment | private |
mpTaskType | CExperiment | private |
mpValueReference | CCopasiParameter | mutableprotected |
mpWeightMethod | CExperiment | private |
mRefreshMethods | CExperiment | private |
mRMS | CExperiment | private |
mRowObjectiveValue | CExperiment | private |
mRowRMS | CExperiment | private |
mScale | CExperiment | private |
mSize | CCopasiParameter | protected |
mStorageIt | CExperiment | private |
mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
mValue | CCopasiParameter | protected |
name_iterator typedef | CCopasiParameterGroup | |
NameVector enum value | CCopasiObject | protected |
NonUniqueName enum value | CCopasiObject | protected |
objectMap typedef | CCopasiContainer | |
ObjectSet typedef | CObjectInterface | |
operator=(const CExperiment &rhs) | CExperiment | |
CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | |
CCopasiParameter::operator=(const CCopasiParameter &rhs) | CCopasiParameter | |
operator==(const CExperiment &lhs, const CExperiment &rhs) | CExperiment | friend |
parameterGroup typedef | CCopasiParameterGroup | |
print(std::ostream *ostream) const | CCopasiParameterGroup | virtual |
printResult(std::ostream *ostream) const | CExperiment | virtual |
read(std::istream &in, size_t ¤tLine) | CExperiment | |
readColumnNames() | CExperiment | |
Reference enum value | CCopasiObject | protected |
remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
removeParameter(const std::string &name) | CCopasiParameterGroup | |
removeParameter(const size_t &index) | CCopasiParameterGroup | |
restoreModelIndependentData() | CExperiment | |
Root enum value | CCopasiObject | protected |
SD enum value | CExperiment | |
Separator enum value | CCopasiObject | protected |
setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
setExperimentType(const CCopasiTask::Type &type) | CExperiment | |
setFileName(const std::string &fileName) | CExperiment | |
setFirstRow(const unsigned C_INT32 &firstRow) | CExperiment | |
setHeaderRow(const unsigned C_INT32 &headerRow) | CExperiment | |
setIsRowOriented(const bool &isRowOriented) | CExperiment | |
setLastRow(const unsigned C_INT32 &lastRow) | CExperiment | |
setNormalizeWeightsPerExperiment(bool flag) | CExperiment | |
setNumColumns(const unsigned C_INT32 &cols) | CExperiment | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
setSeparator(const std::string &seperator) | CExperiment | |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
setValue(const std::string &name, const CType &value) | CCopasiParameterGroup | inline |
setValue(const size_t &index, const CType &value) | CCopasiParameterGroup | inline |
CCopasiParameter::setValue(const CType &value) | CCopasiParameter | inline |
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value) | CCopasiParameter | |
setWeightMethod(const WeightMethod &weightMethod) | CExperiment | |
size() const | CCopasiParameterGroup | |
smpRenameHandler | CCopasiObject | protectedstatic |
StaticString enum value | CCopasiObject | protected |
storeExtendedTimeSeriesData(C_FLOAT64 time) | CExperiment | |
STRING enum value | CCopasiParameter | |
sumOfSquares(const size_t &index, C_FLOAT64 *&residuals) const | CExperiment | |
sumOfSquaresStore(const size_t &index, C_FLOAT64 *&dependentValues) | CExperiment | |
swap(const size_t &iFrom, const size_t &iTo) | CCopasiParameterGroup | |
swap(index_iterator &from, index_iterator &to) | CCopasiParameterGroup | |
time enum value | CExperiment | |
Type enum name | CExperiment | |
TypeName | CExperiment | static |
UDOUBLE enum value | CCopasiParameter | |
UINT enum value | CCopasiParameter | |
updateFittedPoints() | CExperiment | |
updateFittedPointValues(const size_t &index, bool includeSimulation) | CExperiment | |
updateFittedPointValuesFromExtendedTimeSeries(const size_t &index) | CExperiment | |
updateModelWithIndependentData(const size_t &index) | CExperiment | |
UpdateSequence typedef | CObjectInterface | |
VALUE_SCALING enum value | CExperiment | |
ValueBool enum value | CCopasiObject | protected |
ValueDbl enum value | CCopasiObject | protected |
ValueInt enum value | CCopasiObject | protected |
ValueInt64 enum value | CCopasiObject | protected |
ValueString enum value | CCopasiObject | protected |
Vector enum value | CCopasiObject | protected |
WeightMethod enum name | CExperiment | |
WeightMethodName | CExperiment | static |
WeightMethodType | CExperiment | static |
XMLType | CExperiment | static |
~CCopasiContainer() | CCopasiContainer | virtual |
~CCopasiObject() | CCopasiObject | virtual |
~CCopasiParameter() | CCopasiParameter | virtual |
~CCopasiParameterGroup() | CCopasiParameterGroup | virtual |
~CExperiment() | CExperiment | virtual |
~CObjectInterface() | CObjectInterface | inlinevirtual |