| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addGroup(const std::string &name) | CCopasiParameterGroup | |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| addParameter(const CCopasiParameter ¶meter) | CCopasiParameterGroup | |
| addParameter(const std::string &name, const CCopasiParameter::Type type) | CCopasiParameterGroup | |
| addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value) | CCopasiParameterGroup | inline |
| addParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| Array enum value | CCopasiObject | protected |
| assertGroup(const std::string &name) | CCopasiParameterGroup | |
| assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue) | CCopasiParameterGroup | inline |
| beginIndex() const | CCopasiParameterGroup | |
| beginName() const | CCopasiParameterGroup | |
| BOOL enum value | CCopasiParameter | |
| buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
| calculateStatistics() | CExperiment | |
| calculateWeights() | CExperiment | |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiObject() | CCopasiObject | protected |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL) | CCopasiParameter | |
| CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter") | CCopasiParameter | |
| CCopasiParameterGroup() | CCopasiParameterGroup | protected |
| CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL) | CCopasiParameterGroup | |
| CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup") | CCopasiParameterGroup | |
| CExperiment(const CCopasiContainer *pParent, const std::string &name="Experiment") | CExperiment | |
| CExperiment(const CExperiment &src, const CCopasiContainer *pParent=NULL) | CExperiment | |
| CExperiment(const CCopasiParameterGroup &group, const CCopasiContainer *pParent=NULL) | CExperiment | |
| clear() | CCopasiParameterGroup | |
| clearDirectDependencies() | CCopasiObject | |
| clearRefresh() | CCopasiObject | |
| CN enum value | CCopasiParameter | |
| CObjectInterface() | CObjectInterface | inline |
| compare(const CExperiment *lhs, const CExperiment *rhs) | CExperiment | static |
| compile(const std::vector< CCopasiContainer * > listOfContainer=CCopasiContainer::EmptyList) | CExperiment | |
| Container enum value | CCopasiObject | protected |
| DataModel enum value | CCopasiObject | protected |
| DataObjectSet typedef | CCopasiObject | |
| DataUpdateSequence typedef | CCopasiObject | |
| dependent enum value | CExperiment | |
| dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
| DOUBLE enum value | CCopasiParameter | |
| elevateChildren() | CExperiment | virtual |
| EmptyList | CCopasiContainer | static |
| endIndex() const | CCopasiParameterGroup | |
| endName() const | CCopasiParameterGroup | |
| EXPRESSION enum value | CCopasiParameter | |
| extendedTimeSeriesSize() const | CExperiment | |
| FILE enum value | CCopasiParameter | |
| fixBuild55() | CExperiment | |
| Flag enum name | CCopasiObject | protected |
| getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
| getCN() const | CCopasiParameter | virtual |
| getColumnNames() const | CExperiment | |
| getColumnValidValueCount(CCopasiObject *const &pObject) const | CExperiment | |
| getDefaultScale(const CCopasiObject *const &pObject) const | CExperiment | |
| getDependentData() const | CExperiment | |
| getDependentObjects() const | CExperiment | |
| getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
| getErrorMean() const | CExperiment | |
| getErrorMeanSD() const | CExperiment | |
| getErrorMeanSD(CCopasiObject *const &pObject, const C_FLOAT64 &errorMean) const | CExperiment | |
| getErrorSum(CCopasiObject *const &pObject) const | CExperiment | |
| getExperimentType() const | CExperiment | |
| getFileName() const | CExperiment | |
| getFirstRow() const | CExperiment | |
| getFittingPoints() const | CExperiment | |
| getGroup(const std::string &name) | CCopasiParameterGroup | |
| getGroup(const std::string &name) const | CCopasiParameterGroup | |
| getGroup(const size_t &index) | CCopasiParameterGroup | |
| getGroup(const size_t &index) const | CCopasiParameterGroup | |
| getHeaderRow() const | CExperiment | |
| getIndependentData() const | CExperiment | |
| getIndependentObjects() const | CExperiment | |
| getIndex(const std::string &name) const | CCopasiParameterGroup | |
| getKey(const std::string &name) const | CCopasiParameterGroup | |
| getKey(const size_t &index) const | CCopasiParameterGroup | |
| CCopasiParameter::getKey() const | CCopasiParameter | virtual |
| getLastRow() const | CExperiment | |
| getName(const size_t &index) const | CCopasiParameterGroup | virtual |
| getNormalizeWeightsPerExperiment() const | CExperiment | |
| getNumColumns() const | CExperiment | |
| getNumDataRows() const | CExperiment | |
| getObject(const CCopasiObjectName &cn) const | CCopasiParameterGroup | virtual |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiParameter | virtual |
| getObjectiveValue() const | CExperiment | |
| getObjectiveValue(CCopasiObject *const &pObject) const | CExperiment | |
| getObjectMap() | CExperiment | |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| getObjects() const | CCopasiContainer | virtual |
| getObjectType() const | CCopasiObject | |
| getParameter(const std::string &name) | CCopasiParameterGroup | |
| getParameter(const std::string &name) const | CCopasiParameterGroup | |
| getParameter(const size_t &index) | CCopasiParameterGroup | |
| getParameter(const size_t &index) const | CCopasiParameterGroup | |
| getPrerequisites() const | CCopasiObject | virtual |
| getRefresh() const | CCopasiObject | virtual |
| getRMS() const | CExperiment | |
| getRMS(CCopasiObject *const &pObject) const | CExperiment | |
| getSeparator() const | CExperiment | |
| getTimeData() const | CExperiment | |
| getType(const std::string &name) const | CCopasiParameterGroup | |
| getType(const size_t &index) const | CCopasiParameterGroup | |
| CCopasiParameter::getType() const | CCopasiParameter | |
| getUniqueParameterName(const CCopasiParameter *pParameter) const | CCopasiParameterGroup | |
| getUnits() const | CCopasiContainer | virtual |
| getUpdateMethod() const | CCopasiObject | |
| getValue(const std::string &name) const | CCopasiParameterGroup | |
| getValue(const size_t &index) const | CCopasiParameterGroup | |
| getValue(const std::string &name) | CCopasiParameterGroup | |
| getValue(const size_t &index) | CCopasiParameterGroup | |
| CCopasiParameter::getValue() const | CCopasiParameter | |
| CCopasiParameter::getValue() | CCopasiParameter | |
| getValueObject() const | CCopasiContainer | virtual |
| getValuePointer() const | CCopasiParameter | virtual |
| getValueReference() const | CCopasiParameter | |
| getWeightMethod() const | CExperiment | |
| GROUP enum value | CCopasiParameter | |
| guessColumnNumber() const | CExperiment | |
| Gui enum value | CCopasiObject | protected |
| hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
| hasUpdateMethod() const | CCopasiObject | |
| ignore enum value | CExperiment | |
| independent enum value | CExperiment | |
| index_iterator typedef | CCopasiParameterGroup | |
| initExtendedTimeSeries(size_t s) | CExperiment | |
| initializeParameter() | CExperiment | private |
| initializeScalingMatrix() | CExperiment | private |
| initObjects() | CCopasiContainer | protected |
| INT enum value | CCopasiParameter | |
| INVALID enum value | CCopasiParameter | |
| isArray() const | CCopasiObject | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
| isReference() const | CCopasiObject | |
| isRoot() const | CCopasiObject | |
| isRowOriented() const | CExperiment | |
| isSeparator() const | CCopasiObject | |
| isStaticString() const | CCopasiObject | |
| isValidValue(const C_FLOAT64 &value) const | CCopasiParameter | |
| isValidValue(const C_INT32 &value) const | CCopasiParameter | |
| isValidValue(const unsigned C_INT32 &value) const | CCopasiParameter | |
| isValidValue(const bool &value) const | CCopasiParameter | |
| isValidValue(const std::string &value) const | CCopasiParameter | |
| isValidValue(const CCopasiObjectName &value) const | CCopasiParameter | |
| isValidValue(const std::vector< CCopasiParameter * > &value) const | CCopasiParameter | |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueInt64() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| KEY enum value | CCopasiParameter | |
| Matrix enum value | CCopasiObject | protected |
| mColumnName | CExperiment | private |
| mColumnObjectiveValue | CExperiment | private |
| mColumnRMS | CExperiment | private |
| mColumnScale | CExperiment | private |
| mColumnValidValueCount | CExperiment | private |
| mDataDependent | CExperiment | private |
| mDataIndependent | CExperiment | private |
| mDataTime | CExperiment | private |
| mDefaultColumnScale | CExperiment | private |
| mDependentObjects | CExperiment | private |
| mDependentValues | CExperiment | private |
| MEAN enum value | CExperiment | |
| MEAN_SQUARE enum value | CExperiment | |
| mExtendedTimeSeries | CExperiment | private |
| mExtendedTimeSeriesSize | CExperiment | private |
| mFittingPoints | CExperiment | private |
| mIndependentObjects | CExperiment | private |
| mIndependentUpdateMethods | CExperiment | private |
| mIndependentValues | CExperiment | private |
| mKey | CCopasiParameter | protected |
| mMean | CExperiment | private |
| mMeans | CExperiment | private |
| mMeanSD | CExperiment | private |
| mMissingData | CExperiment | private |
| mNumDataRows | CExperiment | private |
| mObjectiveValue | CExperiment | private |
| mObjects | CCopasiContainer | protected |
| ModelEntity enum value | CCopasiObject | protected |
| mpDataDependentCalculated | CExperiment | private |
| mpFileName | CExperiment | private |
| mpFirstRow | CExperiment | private |
| mpHeaderRow | CExperiment | private |
| mpLastRow | CExperiment | private |
| mpNormalizeWeightsPerExperiment | CExperiment | private |
| mpNumColumns | CExperiment | private |
| mpObjectMap | CExperiment | private |
| mpRowOriented | CExperiment | private |
| mpSeparator | CExperiment | private |
| mpTaskType | CExperiment | private |
| mpValueReference | CCopasiParameter | mutableprotected |
| mpWeightMethod | CExperiment | private |
| mRefreshMethods | CExperiment | private |
| mRMS | CExperiment | private |
| mRowObjectiveValue | CExperiment | private |
| mRowRMS | CExperiment | private |
| mScale | CExperiment | private |
| mSize | CCopasiParameter | protected |
| mStorageIt | CExperiment | private |
| mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
| mValue | CCopasiParameter | protected |
| name_iterator typedef | CCopasiParameterGroup | |
| NameVector enum value | CCopasiObject | protected |
| NonUniqueName enum value | CCopasiObject | protected |
| objectMap typedef | CCopasiContainer | |
| ObjectSet typedef | CObjectInterface | |
| operator=(const CExperiment &rhs) | CExperiment | |
| CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | |
| CCopasiParameter::operator=(const CCopasiParameter &rhs) | CCopasiParameter | |
| operator==(const CExperiment &lhs, const CExperiment &rhs) | CExperiment | friend |
| parameterGroup typedef | CCopasiParameterGroup | |
| print(std::ostream *ostream) const | CCopasiParameterGroup | virtual |
| printResult(std::ostream *ostream) const | CExperiment | virtual |
| read(std::istream &in, size_t ¤tLine) | CExperiment | |
| readColumnNames() | CExperiment | |
| Reference enum value | CCopasiObject | protected |
| remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| removeParameter(const std::string &name) | CCopasiParameterGroup | |
| removeParameter(const size_t &index) | CCopasiParameterGroup | |
| restoreModelIndependentData() | CExperiment | |
| Root enum value | CCopasiObject | protected |
| SD enum value | CExperiment | |
| Separator enum value | CCopasiObject | protected |
| setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
| setExperimentType(const CCopasiTask::Type &type) | CExperiment | |
| setFileName(const std::string &fileName) | CExperiment | |
| setFirstRow(const unsigned C_INT32 &firstRow) | CExperiment | |
| setHeaderRow(const unsigned C_INT32 &headerRow) | CExperiment | |
| setIsRowOriented(const bool &isRowOriented) | CExperiment | |
| setLastRow(const unsigned C_INT32 &lastRow) | CExperiment | |
| setNormalizeWeightsPerExperiment(bool flag) | CExperiment | |
| setNumColumns(const unsigned C_INT32 &cols) | CExperiment | |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
| setSeparator(const std::string &seperator) | CExperiment | |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
| setValue(const std::string &name, const CType &value) | CCopasiParameterGroup | inline |
| setValue(const size_t &index, const CType &value) | CCopasiParameterGroup | inline |
| CCopasiParameter::setValue(const CType &value) | CCopasiParameter | inline |
| CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value) | CCopasiParameter | |
| setWeightMethod(const WeightMethod &weightMethod) | CExperiment | |
| size() const | CCopasiParameterGroup | |
| smpRenameHandler | CCopasiObject | protectedstatic |
| StaticString enum value | CCopasiObject | protected |
| storeExtendedTimeSeriesData(C_FLOAT64 time) | CExperiment | |
| STRING enum value | CCopasiParameter | |
| sumOfSquares(const size_t &index, C_FLOAT64 *&residuals) const | CExperiment | |
| sumOfSquaresStore(const size_t &index, C_FLOAT64 *&dependentValues) | CExperiment | |
| swap(const size_t &iFrom, const size_t &iTo) | CCopasiParameterGroup | |
| swap(index_iterator &from, index_iterator &to) | CCopasiParameterGroup | |
| time enum value | CExperiment | |
| Type enum name | CExperiment | |
| TypeName | CExperiment | static |
| UDOUBLE enum value | CCopasiParameter | |
| UINT enum value | CCopasiParameter | |
| updateFittedPoints() | CExperiment | |
| updateFittedPointValues(const size_t &index, bool includeSimulation) | CExperiment | |
| updateFittedPointValuesFromExtendedTimeSeries(const size_t &index) | CExperiment | |
| updateModelWithIndependentData(const size_t &index) | CExperiment | |
| UpdateSequence typedef | CObjectInterface | |
| VALUE_SCALING enum value | CExperiment | |
| ValueBool enum value | CCopasiObject | protected |
| ValueDbl enum value | CCopasiObject | protected |
| ValueInt enum value | CCopasiObject | protected |
| ValueInt64 enum value | CCopasiObject | protected |
| ValueString enum value | CCopasiObject | protected |
| Vector enum value | CCopasiObject | protected |
| WeightMethod enum name | CExperiment | |
| WeightMethodName | CExperiment | static |
| WeightMethodType | CExperiment | static |
| XMLType | CExperiment | static |
| ~CCopasiContainer() | CCopasiContainer | virtual |
| ~CCopasiObject() | CCopasiObject | virtual |
| ~CCopasiParameter() | CCopasiParameter | virtual |
| ~CCopasiParameterGroup() | CCopasiParameterGroup | virtual |
| ~CExperiment() | CExperiment | virtual |
| ~CObjectInterface() | CObjectInterface | inlinevirtual |
