| __SIZE enum value | CDataObject |  | 
  | add(CDataObject *pObject, const bool &adopt=true) | CDataContainer | virtual | 
  | addIssue(const CIssue &issue) | CDataObject |  | 
  | addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected | 
  | addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected | 
  | addReference(const CDataContainer *pReference) | CDataObject |  | 
  | addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected | 
  | appendDeletedDependentData(CUndoData &undoData) const | CDataContainer | virtual | 
  | applyData(const CData &data, CUndoData::CChangeSet &changes) | CCopasiTask | virtual | 
  | Array enum value | CDataObject |  | 
  | calculateValue() override | CDataObject | virtual | 
  | CCopasiTask() | CCopasiTask | private | 
  | CCopasiTask(const CDataContainer *pParent, const CTaskEnum::Task &taskType, const std::string &type="Task") | CCopasiTask |  | 
  | CCopasiTask(const CCopasiTask &src, const CDataContainer *pParent) | CCopasiTask |  | 
  | CDataContainer() | CDataContainer | private | 
  | CDataContainer(const CDataContainer &src) | CDataContainer | protected | 
  | CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer |  | 
  | CDataContainer(const CDataContainer &src, const CDataContainer *pParent) | CDataContainer |  | 
  | CDataObject() | CDataObject | protected | 
  | CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataObject | protected | 
  | CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL) | CDataObject |  | 
  | cleanup() | CSteadyStateTask | private | 
  | clearCallBack() | CCopasiTask | virtual | 
  | CObjectInterface() | CObjectInterface |  | 
  | CObjectInterface(const CObjectInterface &src) | CObjectInterface |  | 
  | Container enum value | CDataObject |  | 
  | ContainerList typedef | CObjectInterface |  | 
  | createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const | CCopasiTask | virtual | 
  | CSteadyStateTask() | CSteadyStateTask | private | 
  | CSteadyStateTask(const CDataContainer *pParent, const CTaskEnum::Task &type=CTaskEnum::Task::steadyState) | CSteadyStateTask |  | 
  | CSteadyStateTask(const CSteadyStateTask &src, const CDataContainer *pParent) | CSteadyStateTask |  | 
  | CUndoObjectInterface() | CUndoObjectInterface |  | 
  | CUndoObjectInterface(const CUndoObjectInterface &src) | CUndoObjectInterface |  | 
  | DataModel enum value | CDataObject |  | 
  | DataObject(const CObjectInterface *pInterface) | CObjectInterface | static | 
  | DataObjectSet typedef | CDataObject |  | 
  | destruct() override | CDataObject | virtual | 
  | DisplayName enum value | CDataObject |  | 
  | EmptyList | CDataContainer | static | 
  | eOutputFlagBase enum name | CCopasiTask |  | 
  | Error | CCopasiTask |  | 
  | FINISH enum value | CCopasiTask |  | 
  | Flag enum name | CDataObject |  | 
  | fromData(const CData &data, CUndoObjectInterface *pParent) | CCopasiTask | static | 
  | generateUuid() | CUndoObjectInterface |  | 
  | getCallBack() const | CCopasiTask |  | 
  | getChildObjectUnits(const CDataObject *pObject) const | CDataContainer | virtual | 
  | getCN() const override | CDataObject | virtual | 
  | getDataObject() const override | CDataObject | virtual | 
  | getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const | CDataContainer |  | 
  | getDescription() const | CCopasiTask |  | 
  | getEigenValues() const | CSteadyStateTask |  | 
  | getEigenValuesReduced() const | CSteadyStateTask |  | 
  | getIndex(const CDataObject *pObject) const | CDataContainer | virtual | 
  | getJacobian() const | CSteadyStateTask |  | 
  | getJacobianAnnotated() const | CSteadyStateTask |  | 
  | getJacobianReduced() const | CSteadyStateTask |  | 
  | getJacobianXAnnotated() const | CSteadyStateTask |  | 
  | getKey() const | CCopasiTask | virtual | 
  | getMathContainer() const | CCopasiTask |  | 
  | getMethod() | CCopasiTask |  | 
  | getMethod() const | CCopasiTask |  | 
  | getObject(const CCommonName &cn) const override | CDataContainer | virtual | 
  | getObjectAncestor(const std::string &type) const | CDataObject |  | 
  | getObjectDataModel() const | CDataObject |  | 
  | getObjectDisplayName() const override | CDataObject | virtual | 
  | getObjectFromCN(const CCommonName &cn) const | CDataObject |  | 
  | GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName) | CObjectInterface | static | 
  | getObjectName() const | CDataObject |  | 
  | getObjectParent() const | CDataObject |  | 
  | getObjects() const | CDataContainer | virtual | 
  | getObjects() | CDataContainer | virtual | 
  | getObjectType() const | CDataObject |  | 
  | getOutputHandler() const | CCopasiTask |  | 
  | getOutputMode() const | CCopasiTask | inline | 
  | getPrerequisites() const override | CDataObject | virtual | 
  | getProblem() | CCopasiTask |  | 
  | getProblem() const | CCopasiTask |  | 
  | getReport() | CCopasiTask |  | 
  | getReport() const | CCopasiTask |  | 
  | getResult() const | CSteadyStateTask | inline | 
  | getSliders() | CCopasiTask |  | 
  | getState() const | CSteadyStateTask |  | 
  | getType() const | CCopasiTask |  | 
  | getUnits() const override | CDataContainer | virtual | 
  | getUuid() const | CUndoObjectInterface |  | 
  | getValidity() const override | CDataObject | virtual | 
  | getValidMethods() const override | CSteadyStateTask | virtual | 
  | getValueObject() const override | CDataContainer | virtual | 
  | getValuePointer() const override | CDataObject | virtual | 
  | Gui enum value | CDataObject |  | 
  | hasFlag(const Flag &flag) const | CDataObject |  | 
  | initialize(const OutputFlag &of, COutputHandler *pOutputHandler, std::ostream *pOstream) override | CSteadyStateTask | virtual | 
  | INITIALIZE enum value | CCopasiTask |  | 
  | initObjects() | CSteadyStateTask | private | 
  | insert(const CData &data) override | CDataContainer | virtual | 
  | isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override | CDataObject | virtual | 
  | isScheduled() const | CCopasiTask |  | 
  | isTaskValid() const | CCopasiTask | protected | 
  | isUpdateModel() const | CCopasiTask |  | 
  | isValidMethod(const CTaskEnum::Method &method, const CTaskEnum::Method *validMethods) | CCopasiTask | static | 
  | load(CReadConfig &configBuffer) | CSteadyStateTask |  | 
  | mAggregateValidity | CDataObject | private | 
  | Matrix enum value | CDataObject |  | 
  | mDescription | CCopasiTask | protected | 
  | mDoOutput | CCopasiTask | protected | 
  | mEigenValues | CSteadyStateTask | private | 
  | mEigenvaluesMatrix | CSteadyStateTask | private | 
  | mEigenValuesX | CSteadyStateTask | private | 
  | mEigenvaluesXMatrix | CSteadyStateTask | private | 
  | mIgnoreProblemData | CCopasiTask | protected | 
  | mInitialState | CCopasiTask | protected | 
  | mJacobian | CSteadyStateTask | private | 
  | mJacobianReduced | CSteadyStateTask | private | 
  | mKey | CCopasiTask | protected | 
  | mObjectDisplayName | CDataObject | mutableprivate | 
  | mObjectFlag | CDataObject | private | 
  | mObjectName | CDataObject | private | 
  | mObjects | CDataContainer | protected | 
  | mObjectType | CDataObject | private | 
  | ModelEntity enum value | CDataObject |  | 
  | mOutputCounter | CCopasiTask | protected | 
  | mpContainer | CCopasiTask | protected | 
  | mpEigenvaluesJacobianAnn | CSteadyStateTask | private | 
  | mpEigenvaluesJacobianXAnn | CSteadyStateTask | private | 
  | mpJacobianAnn | CSteadyStateTask | private | 
  | mpJacobianXAnn | CSteadyStateTask | private | 
  | mpMethod | CCopasiTask | protected | 
  | mpObjectDisplayName | CDataObject | mutableprivate | 
  | mpObjectName | CDataObject | mutableprivate | 
  | mpObjectParent | CDataObject | private | 
  | mpOutputHandler | CCopasiTask | protected | 
  | mpProblem | CCopasiTask | protected | 
  | mPrerequisits | CDataObject | protected | 
  | mProcessReport | CCopasiTask | protected | 
  | mpSliders | CCopasiTask | protected | 
  | mpUuid | CUndoObjectInterface | private | 
  | mReferencedValidities | CDataObject | private | 
  | mReferences | CDataObject | protected | 
  | mReport | CCopasiTask | protected | 
  | mResult | CSteadyStateTask | private | 
  | mScheduled | CCopasiTask | protected | 
  | mSteadyState | CSteadyStateTask | private | 
  | mType | CCopasiTask | protected | 
  | mUpdateModel | CCopasiTask | protected | 
  | mUuidLocked | CUndoObjectInterface | private | 
  | mValidity | CObjectInterface | mutableprotected | 
  | NameVector enum value | CDataObject |  | 
  | NO_OUTPUT enum value | CCopasiTask |  | 
  | NonUniqueName enum value | CDataObject |  | 
  | objectMap typedef | CDataContainer |  | 
  | objectRenamed(CDataObject *pObject, const std::string &oldName) | CDataContainer |  | 
  | ObjectSet typedef | CObjectInterface |  | 
  | ONLY_TIME_SERIES enum value | CCopasiTask |  | 
  | operator<<(std::ostream &os, const CSteadyStateTask &A) | CSteadyStateTask | friend | 
  | OUTPUT enum value | CCopasiTask |  | 
  | output(const COutputInterface::Activity &activity) | CCopasiTask | virtual | 
  | OUTPUT_AFTER enum value | CCopasiTask |  | 
  | OUTPUT_BEFORE enum value | CCopasiTask |  | 
  | OUTPUT_DURING enum value | CCopasiTask |  | 
  | OUTPUT_SE enum value | CCopasiTask |  | 
  | OUTPUT_UI enum value | CCopasiTask |  | 
  | OutputFlag enum name | CCopasiTask |  | 
  | PLOT enum value | CCopasiTask |  | 
  | prerequisitsContains(const DataObjectSet &objects) const | CDataObject |  | 
  | print(std::ostream *ostream) const override | CSteadyStateTask | virtual | 
  | process(const bool &useInitialValues) override | CSteadyStateTask | virtual | 
  | Reference enum value | CDataObject |  | 
  | refreshAggregateValidity() | CDataObject | private | 
  | remove(CDataObject *pObject) | CDataContainer | virtual | 
  | removeIssue(const CIssue &issue) | CDataObject |  | 
  | removeReference(const CDataContainer *pReference) | CDataObject |  | 
  | REPORT enum value | CCopasiTask |  | 
  | restore(const bool &updateModel=true) override | CSteadyStateTask | virtual | 
  | Root enum value | CDataObject |  | 
  | sanitizeObjectName(std::string &name) | CDataObject | static | 
  | separate(const COutputInterface::Activity &activity) | CCopasiTask | virtual | 
  | Separator enum value | CDataObject |  | 
  | setCallBack(CProcessReportLevel callBack) | CCopasiTask | virtual | 
  | setIgnoreProblemData(const bool &ignoreProblemData) | CCopasiTask |  | 
  | setMathContainer(CMathContainer *pContainer) | CCopasiTask |  | 
  | setMethodType(const CTaskEnum::Method &type) | CCopasiTask |  | 
  | setObjectName(const std::string &name) | CDataObject |  | 
  | setObjectParent(const CDataContainer *pParent) | CDataObject | virtual | 
  | setScheduled(const bool &scheduled) | CCopasiTask |  | 
  | setType(const CTaskEnum::Task &type) | CCopasiTask |  | 
  | setUpdateModel(const bool &updateModel) | CCopasiTask | virtual | 
  | setUuid(const xg::Guid &uuid) | CUndoObjectInterface |  | 
  | setUuid(const std::string &uuid) | CUndoObjectInterface |  | 
  | signalMathContainerChanged() | CCopasiTask | protectedvirtual | 
  | signalMethodChanged() | CCopasiTask | protectedvirtual | 
  | StaticString enum value | CDataObject |  | 
  | STREAM enum value | CCopasiTask |  | 
  | TIME_SERIES enum value | CCopasiTask |  | 
  | toData() const | CCopasiTask | virtual | 
  | updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject) | CUndoObjectInterface | virtual | 
  | updateMatrices() override | CSteadyStateTask | virtual | 
  | validityChanged(const CValidity &changedValidity) override | CDataObject | virtual | 
  | validityRemoved(const CValidity &changedValidity) | CDataObject |  | 
  | ValueBool enum value | CDataObject |  | 
  | ValueDbl enum value | CDataObject |  | 
  | ValueInt enum value | CDataObject |  | 
  | ValueInt64 enum value | CDataObject |  | 
  | ValueString enum value | CDataObject |  | 
  | Vector enum value | CDataObject |  | 
  | Warning | CCopasiTask |  | 
  | ~CCopasiTask() | CCopasiTask | virtual | 
  | ~CDataContainer() | CDataContainer | virtual | 
  | ~CDataObject() | CDataObject | virtual | 
  | ~CObjectInterface() | CObjectInterface | virtual | 
  | ~CSteadyStateTask() | CSteadyStateTask | virtual | 
  | ~CUndoObjectInterface() | CUndoObjectInterface | virtual |