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COPASI API
4.16.103
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This is the complete list of members for CModel, including all inherited members.
| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| addUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| appendDependentCompartments(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | private |
| appendDependentEvents(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | private |
| appendDependentMetabolites(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | private |
| appendDependentModelObjects(const std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &dependentReactions, std::set< const CCopasiObject * > &dependentMetabolites, std::set< const CCopasiObject * > &dependentCompartments, std::set< const CCopasiObject * > &dependentModelValues, std::set< const CCopasiObject * > &dependentEvents) const | CModel | |
| appendDependentModelValues(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | private |
| appendDependentReactions(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | |
| applyActiveParameterSet() | CModel | |
| applyInitialValues() | CModel | |
| AreaUnit enum name | CModel | |
| AreaUnitNames | CModel | static |
| Array enum value | CCopasiObject | protected |
| ASSIGNMENT enum value | CModelEntity | |
| buildApplyInitialValuesSequence() | CModel | private |
| buildDependencyGraphs() | CModel | |
| buildInitialRefreshSequence(std::set< const CCopasiObject * > &changedObjects) | CModel | |
| buildInitialSequence() | CModel | private |
| buildLinkZero() | CModel | |
| buildMoieties() | CModel | |
| buildNonSimulatedSequence() | CModel | private |
| buildRedStoi() | CModel | |
| buildSimulatedSequence() | CModel | private |
| buildStateTemplate() | CModel | private |
| buildStoi() | CModel | |
| buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
| buildUserOrder() | CModel | private |
| calculate() | CModelEntity | virtual |
| calculateDerivatives(C_FLOAT64 *derivatives) | CModel | |
| calculateDerivativesX(C_FLOAT64 *derivativesX) | CModel | |
| calculateDivergence() const | CModel | |
| calculateElasticityMatrix(const C_FLOAT64 &factor, const C_FLOAT64 &resolution) | CModel | |
| calculateJacobian(CMatrix< C_FLOAT64 > &jacobian, const C_FLOAT64 &derivationFactor, const C_FLOAT64 &resolution) | CModel | |
| calculateJacobianX(CMatrix< C_FLOAT64 > &jacobianX, const C_FLOAT64 &derivationFactor, const C_FLOAT64 &resolution) | CModel | |
| calculateRootDerivatives(CVector< C_FLOAT64 > &rootDerivatives) | CModel | |
| CAnnotation() | CAnnotation | |
| CAnnotation(const CAnnotation &src) | CAnnotation | |
| castObject(CCopasiObject *pObject) | CAnnotation | static |
| castObject(const CCopasiObject *pObject) | CAnnotation | static |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiObject() | CCopasiObject | protected |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| clearDirectDependencies() | CCopasiObject | |
| clearMoieties() | CModel | private |
| clearRefresh() | CCopasiObject | |
| cm enum value | CModel | |
| cm2 enum value | CModel | |
| CModel(const CModel &src) | CModel | private |
| CModel(CCopasiContainer *pParent) | CModel | |
| CModelEntity(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="ModelEntity", const unsigned C_INT32 &flag=CCopasiObject::Container|CCopasiObject::ValueDbl) | CModelEntity | |
| CModelEntity(const CModelEntity &src, const CCopasiContainer *pParent=NULL) | CModelEntity | |
| CObjectInterface() | CObjectInterface | inline |
| compile() | CModel | privatevirtual |
| compileEvents() | CModel | private |
| compileIfNecessary(CProcessReport *pProcessReport) | CModel | |
| Container enum value | CCopasiObject | protected |
| convert2NonReversible() | CModel | |
| createCompartment(const std::string &name, const C_FLOAT64 &volume=1.0) | CModel | |
| createEvent(const std::string &name) | CModel | |
| createMetabolite(const std::string &name, const std::string &compartment, const C_FLOAT64 &iconc=1.0, const CModelEntity::Status &status=CModelEntity::REACTIONS) | CModel | |
| createModelValue(const std::string &name, const C_FLOAT64 &value=0.0) | CModel | |
| createReaction(const std::string &name) | CModel | |
| d enum value | CModel | |
| DataModel enum value | CCopasiObject | protected |
| DataObjectSet typedef | CCopasiObject | |
| DataUpdateSequence typedef | CCopasiObject | |
| DependencyType enum name | CModel | |
| dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
| determineIsAutonomous() | CModel | private |
| deterministic enum value | CModel | |
| dimensionlessArea enum value | CModel | |
| dimensionlessLength enum value | CModel | |
| dimensionlessQuantity enum value | CModel | |
| dimensionlessTime enum value | CModel | |
| dimensionlessVolume enum value | CModel | |
| dm enum value | CModel | |
| dm2 enum value | CModel | |
| EmptyList | CCopasiContainer | static |
| evaluateRoots(CVectorCore< C_FLOAT64 > &rootValues, const bool &ignoreDiscrete) | CModel | |
| findMetabByName(const std::string &Target) const | CModel | |
| findMoiety(const std::string &Target) const | CModel | |
| FIXED enum value | CModelEntity | |
| fl enum value | CModel | |
| Flag enum name | CCopasiObject | protected |
| fm enum value | CModel | |
| fm2 enum value | CModel | |
| fMol enum value | CModel | |
| forceCompile(CProcessReport *pProcessReport) | CModel | |
| fs enum value | CModel | |
| getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
| getAreaUnitEnum() const | CModel | |
| getAreaUnitName() const | CModel | |
| getAreaUnitsDisplayString() const | CModel | |
| getAvogadro() const | CModel | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CModel | virtual |
| getCN() const | CCopasiObject | virtual |
| getCompartments() | CModel | |
| getCompartments() const | CModel | |
| getConcentrationRateUnitsDisplayString() const | CModel | |
| getConcentrationUnitsDisplayString() const | CModel | |
| getCorrespondingTransientObject(const CCopasiObject *pObject) const | CModel | |
| getDeletedObjects() const | CModelEntity | virtual |
| getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
| getEvents() | CModel | |
| getEvents() const | CModel | |
| getExpression() const | CModelEntity | |
| getExpressionPtr() const | CModelEntity | |
| getExpressionPtr() | CModelEntity | |
| getFrequencyUnitsDisplayString() const | CModel | |
| getInitialExpression() const | CModelEntity | |
| getInitialExpressionPtr() const | CModelEntity | |
| getInitialExpressionPtr() | CModelEntity | |
| getInitialState() const | CModel | |
| getInitialTime() const | CModel | |
| getInitialUpdateSequence(const CMath::SimulationContextFlag &context, const CCopasiObject::DataObjectSet &changedObjects, const CCopasiObject::DataObjectSet &requestedObjects, CCopasiObject::DataUpdateSequence &updateSequence) const | CModel | |
| getInitialValue() const | CModelEntity | |
| getInitialValueReference() const | CModelEntity | |
| getKey() const | CModel | virtual |
| getL() const | CModel | |
| getL0() const | CModel | |
| getLengthUnitEnum() const | CModel | |
| getLengthUnitName() const | CModel | |
| getLengthUnitsDisplayString() const | CModel | |
| getListOfConstantRefreshes() const | CModel | |
| getListOfInitialRefreshes() const | CModel | |
| getListOfNonSimulatedRefreshes() const | CModel | |
| getListOfSimulatedRefreshes() const | CModel | |
| getMathModel() const | CModel | |
| getMathModel() | CModel | |
| getMetabolites() const | CModel | |
| getMetabolites() | CModel | |
| getMetabolitesX() const | CModel | |
| getMetabolitesX() | CModel | |
| getMiriamAnnotation() const | CAnnotation | |
| getModelParameterSet() const | CModel | |
| getModelParameterSet() | CModel | |
| getModelParameterSets() const | CModel | |
| getModelParameterSets() | CModel | |
| getModelType() const | CModel | |
| getModelValues() const | CModel | |
| getModelValues() | CModel | |
| getMoieties() const | CModel | |
| getNotes() const | CAnnotation | |
| getNumAssignmentMetabs() const | CModel | |
| getNumber2QuantityFactor() const | CModel | |
| getNumDependentReactionMetabs() const | CModel | |
| getNumIndependentReactionMetabs() const | CModel | |
| getNumMetabs() const | CModel | |
| getNumModelValues() const | CModel | |
| getNumODEMetabs() const | CModel | |
| getNumRoots() const | CModel | |
| getNumVariableMetabs() const | CModel | |
| getObject(const CCopasiObjectName &cn) const | CCopasiContainer | virtual |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | virtual |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| getObjects() const | CCopasiContainer | virtual |
| getObjectType() const | CCopasiObject | |
| getParticleFlux() const | CModel | |
| getPrerequisites() const | CCopasiObject | virtual |
| getProcessQueueExecutionTime() const | CModel | |
| getQuantity2NumberFactor() const | CModel | |
| getQuantityRateUnitsDisplayString() const | CModel | |
| getQuantityUnitEnum() const | CModel | |
| getQuantityUnitName() const | CModel | |
| getQuantityUnitOldXMLName() const | CModel | |
| getQuantityUnitsDisplayString() const | CModel | |
| getRate() const | CModelEntity | |
| getRateReference() const | CModelEntity | |
| getReactions() | CModel | |
| getReactions() const | CModel | |
| getRedStoi() const | CModel | |
| getRefresh() const | CCopasiObject | virtual |
| getRootFinders() const | CModel | |
| getSBMLId() const | CModelEntity | |
| getState() const | CModel | |
| getStateTemplate() const | CModel | |
| getStateTemplate() | CModel | |
| getStatus() const | CModelEntity | |
| getStoi() const | CModel | |
| getTime() const | CModel | |
| getTimeUnitEnum() const | CModel | |
| getTimeUnitName() const | CModel | |
| getTimeUnitsDisplayString() const | CModel | |
| getTotSteps() const | CModel | |
| getTransientUpdateSequence(const CMath::SimulationContextFlag &context, const CCopasiObject::DataObjectSet &changedObjects, const CCopasiObject::DataObjectSet &requestedObjects, CCopasiObject::DataUpdateSequence &updateSequence) const | CModel | |
| getTreesWithDiscontinuities() const | CModel | |
| getUnits() const | CCopasiContainer | virtual |
| getUnsupportedAnnotations() | CAnnotation | |
| getUnsupportedAnnotations() const | CAnnotation | |
| getUpdateMethod() const | CCopasiObject | |
| getUpdateSequence(CMathDependencyGraph &dependencyGraph, const CMath::SimulationContextFlag &context, const CCopasiObject::DataObjectSet &changedObjects, const CCopasiObject::DataObjectSet &requestedObjects, CCopasiObject::DataUpdateSequence &updateSequence) const | CModel | private |
| getUptoDateObjects() const | CModel | |
| getValue() const | CModelEntity | |
| getValueObject() const | CModelEntity | virtual |
| getValuePointer() const | CModelEntity | virtual |
| getValueReference() const | CModelEntity | |
| getVolumeRateUnitsDisplayString() const | CModel | |
| getVolumeUnitEnum() const | CModel | |
| getVolumeUnitName() const | CModel | |
| getVolumeUnitsDisplayString() const | CModel | |
| Gui enum value | CCopasiObject | protected |
| h enum value | CModel | |
| handleUnusedMetabolites() | CModel | private |
| hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
| hasReversibleReaction() const | CModel | |
| hasUpdateMethod() const | CCopasiObject | |
| initial enum value | CModel | |
| initializeAtolVector(const C_FLOAT64 &baseTolerance, const bool &reducedModel) const | CModel | |
| initializeMetabolites() | CModel | |
| initObjects() | CModel | private |
| isArray() const | CCopasiObject | |
| isAutonomous() const | CModel | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isFixed() const | CModelEntity | inline |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
| isReference() const | CCopasiObject | |
| isRoot() const | CCopasiObject | |
| isSeparator() const | CCopasiObject | |
| isStateVariable(const CCopasiObject *pObject) const | CModel | |
| isStaticString() const | CCopasiObject | |
| isUsed() const | CModelEntity | |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueInt64() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| l enum value | CModel | |
| LengthUnit enum name | CModel | |
| LengthUnitNames | CModel | static |
| load(CReadConfig &configBuffer) | CModel | |
| m enum value | CModel | |
| m2 enum value | CModel | |
| m3 enum value | CModel | |
| mActiveParameterSetKey | CModel | private |
| mApplyInitialValuesRefreshes | CModel | private |
| mAreaUnit | CModel | private |
| Matrix enum value | CCopasiObject | protected |
| mAvogadro | CModel | private |
| mBuildInitialSequence | CModel | private |
| mCompartments | CModel | private |
| mCompileIsNecessary | CModel | private |
| mCurrentState | CModel | private |
| mElasticities | CModel | private |
| mEvents | CModel | private |
| microl enum value | CModel | |
| microm enum value | CModel | |
| microm2 enum value | CModel | |
| microMol enum value | CModel | |
| micros enum value | CModel | |
| min enum value | CModel | |
| mInitialDependencies | CModel | mutableprivate |
| mInitialRefreshes | CModel | private |
| mInitialState | CModel | private |
| mIsAutonomous | CModel | private |
| mJacobianPivot | CModel | private |
| mKey | CAnnotation | protected |
| ml enum value | CModel | |
| mL | CModel | private |
| mLengthUnit | CModel | private |
| mLView | CModel | private |
| mm enum value | CModel | |
| mm2 enum value | CModel | |
| mMetabolites | CModel | private |
| mMetabolitesX | CModel | private |
| mMoieties | CModel | private |
| mMol enum value | CModel | |
| mNonSimulatedRefreshes | CModel | private |
| mNumber2QuantityFactor | CModel | private |
| mNumMetabolitesAssignment | CModel | private |
| mNumMetabolitesODE | CModel | private |
| mNumMetabolitesReaction | CModel | private |
| mNumMetabolitesReactionIndependent | CModel | private |
| mNumMetabolitesUnused | CModel | private |
| mObjects | CCopasiContainer | protected |
| ModelEntity enum value | CCopasiObject | protected |
| ModelType enum name | CModel | |
| ModelTypeNames | CModel | static |
| Mol enum value | CModel | |
| mParameterSet | CModel | private |
| mParameterSets | CModel | private |
| mParticleFluxes | CModel | private |
| mpCompileHandler | CModel | private |
| mpExpression | CModelEntity | protected |
| mPhysicalDependencies | CModel | private |
| mpInitialExpression | CModelEntity | protected |
| mpIValue | CModelEntity | protected |
| mpIValueReference | CModelEntity | protected |
| mpLinkMatrixAnnotation | CModel | private |
| mpMathModel | CModel | private |
| mpModel | CModelEntity | protected |
| mpRateReference | CModelEntity | protected |
| mpRedStoiAnnotation | CModel | private |
| mpStoiAnnotation | CModel | private |
| mpValue | CModelEntity | protected |
| mpValueReference | CModelEntity | protected |
| mQuantity2NumberFactor | CModel | private |
| mQuantityUnit | CModel | private |
| mRate | CModelEntity | protected |
| mRedStoi | CModel | private |
| mReorderNeeded | CModel | private |
| ms enum value | CModel | |
| mSBMLId | CModelEntity | protected |
| mSimulatedRefreshes | CModel | private |
| mSimulatedUpToDateObjects | CModel | private |
| mStateTemplate | CModel | private |
| mSteps | CModel | private |
| mStoi | CModel | private |
| mStoiInternal | CModel | private |
| mTimeUnit | CModel | private |
| mTransientDependencies | CModel | mutableprivate |
| mType | CModel | private |
| mustBeDeleted(const DataObjectSet &deletedObjects) const | CModelEntity | virtual |
| mValues | CModel | private |
| mVolumeUnit | CModel | private |
| NameVector enum value | CCopasiObject | protected |
| nl enum value | CModel | |
| nm enum value | CModel | |
| nm2 enum value | CModel | |
| nMol enum value | CModel | |
| NonUniqueName enum value | CCopasiObject | protected |
| ns enum value | CModel | |
| number enum value | CModel | |
| objectMap typedef | CCopasiContainer | |
| ObjectSet typedef | CObjectInterface | |
| ODE enum value | CModelEntity | |
| OldMinute enum value | CModel | |
| OldXML enum value | CModel | |
| operator=(const CModel &src) | CModel | private |
| operator==(const CAnnotation &rhs) const | CAnnotation | |
| physical enum value | CModel | |
| pl enum value | CModel | |
| pm enum value | CModel | |
| pm2 enum value | CModel | |
| pMol enum value | CModel | |
| print(std::ostream *ostream) const | CCopasiObject | virtual |
| printParameterOverview() | CModel | |
| processQueue(const C_FLOAT64 &time, const bool &equality, CProcessQueue::resolveSimultaneousAssignments pResolveSimultaneousAssignments) | CModel | |
| processRoots(const C_FLOAT64 &time, const bool &equality, const bool &correct, const CVector< C_INT > &roots) | CModel | |
| ps enum value | CModel | |
| QuantityUnit enum name | CModel | |
| QuantityUnitNames | CModel | static |
| QuantityUnitOldXMLNames | CModel | static |
| REACTIONS enum value | CModelEntity | |
| Reference enum value | CCopasiObject | protected |
| refreshActiveParameterSet() | CModel | |
| refreshInitialValue() | CModelEntity | virtual |
| remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
| removeCompartment(const size_t index, const bool &recursive=true) | CModel | |
| removeCompartment(const std::string &key, const bool &recursive=true) | CModel | |
| removeCompartment(const CCompartment *pCompartment, const bool &recursive=true) | CModel | |
| removeDependentModelObjects(const std::set< const CCopasiObject * > &deletedObjects) | CModel | |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| removeEvent(const size_t index, const bool &recursive=true) | CModel | |
| removeEvent(const std::string &key, const bool &recursive=true) | CModel | |
| removeEvent(const CEvent *pEvent, const bool &recursive=true) | CModel | |
| removeLocalReactionParameter(const std::string &key, const bool &recursive=true) | CModel | |
| removeMetabolite(const std::string &key, const bool &recursive=true) | CModel | |
| removeMetabolite(const size_t index, const bool &recursive=true) | CModel | |
| removeMetabolite(const CMetab *pMetabolite, const bool &recursive=true) | CModel | |
| removeModelValue(const CModelValue *pModelValue, const bool &recursive=true) | CModel | |
| removeModelValue(const std::string &key, const bool &recursive=true) | CModel | |
| removeModelValue(const size_t index, const bool &recursive=true) | CModel | |
| removeReaction(const CReaction *pReaction, const bool &recursive=true) | CModel | |
| removeReaction(const std::string &key, const bool &recursive=true) | CModel | |
| removeReaction(const size_t index, const bool &recursive=true) | CModel | |
| removeUnsupportedAnnotation(const std::string &name) | CAnnotation | |
| replaceUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
| Root enum value | CCopasiObject | protected |
| s enum value | CModel | |
| Separator enum value | CCopasiObject | protected |
| setAreaUnit(const std::string &name) | CModel | |
| setAreaUnit(const CModel::AreaUnit &unit) | CModel | |
| setAvogadro(const C_FLOAT64 &avogadro) | CModel | |
| setCompileFlag(bool flag=true) | CModel | |
| setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
| setExpression(const std::string &expression) | CModelEntity | |
| setExpressionPtr(CExpression *pExpression) | CModelEntity | |
| setInitialExpression(const std::string &expression) | CModelEntity | |
| setInitialExpressionPtr(CExpression *pExpression) | CModelEntity | |
| setInitialState(const CState &state) | CModel | |
| setInitialTime(const C_FLOAT64 &time) | CModel | |
| setInitialValue(const C_FLOAT64 &initialValue) | CModelEntity | virtual |
| setInitialValuePtr(C_FLOAT64 *pInitialValue) | CModelEntity | |
| setLengthUnit(const std::string &name) | CModel | |
| setLengthUnit(const CModel::LengthUnit &unit) | CModel | |
| setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
| setModelType(const ModelType &modelType) | CModel | |
| setNotes(const std::string ¬es) | CAnnotation | |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CModelEntity | virtual |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setQuantityUnit(const std::string &name) | CModel | |
| setQuantityUnit(const CModel::QuantityUnit &unit) | CModel | |
| setRate(const C_FLOAT64 &rate) | CModelEntity | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
| setSBMLId(const std::string &id) | CModelEntity | |
| setState(const CState &state) | CModel | |
| setStatus(const CModelEntity::Status &status) | CModelEntity | virtual |
| setTime(const C_FLOAT64 &time) | CModel | |
| setTimeUnit(const std::string &name) | CModel | |
| setTimeUnit(const CModel::TimeUnit &unit) | CModel | |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
| setUsed(const bool &used) | CModelEntity | |
| setValue(const C_FLOAT64 &value) | CModelEntity | virtual |
| setValuePtr(C_FLOAT64 *pValue) | CModelEntity | |
| setVolumeUnit(const std::string &name) | CModel | |
| setVolumeUnit(const CModel::VolumeUnit &unit) | CModel | |
| smpRenameHandler | CCopasiObject | protectedstatic |
| StaticString enum value | CCopasiObject | protected |
| Status enum name | CModelEntity | |
| StatusName | CModelEntity | static |
| stochastic enum value | CModel | |
| suitableForStochasticSimulation() const | CModel | |
| TIME enum value | CModelEntity | |
| TimeUnit enum name | CModel | |
| TimeUnitNames | CModel | static |
| transient enum value | CModel | |
| UnsupportedAnnotation typedef | CAnnotation | |
| updateInitialValues() | CModel | |
| updateInitialValues(std::set< const CCopasiObject * > &changedObjects) | CModel | |
| updateInitialValues(const CCopasiObject *changedObject) | CModel | |
| updateMatrixAnnotations() | CModel | private |
| updateMoietyValues() | CModel | private |
| updateNonSimulatedValues(void) | CModel | |
| UpdateSequence typedef | CObjectInterface | |
| updateSimulatedValues(const bool &updateMoieties) | CModel | |
| ValueBool enum value | CCopasiObject | protected |
| ValueDbl enum value | CCopasiObject | protected |
| ValueInt enum value | CCopasiObject | protected |
| ValueInt64 enum value | CCopasiObject | protected |
| ValueString enum value | CCopasiObject | protected |
| Vector enum value | CCopasiObject | protected |
| VolumeUnit enum name | CModel | |
| VolumeUnitNames | CModel | static |
| XMLStatus | CModelEntity | static |
| ~CAnnotation() | CAnnotation | virtual |
| ~CCopasiContainer() | CCopasiContainer | virtual |
| ~CCopasiObject() | CCopasiObject | virtual |
| ~CModel() | CModel | |
| ~CModelEntity() | CModelEntity | |
| ~CObjectInterface() | CObjectInterface | inlinevirtual |
1.8.6