COPASI API
4.16.103
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This is the complete list of members for CModel, including all inherited members.
add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
appendDependentCompartments(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | private |
appendDependentEvents(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | private |
appendDependentMetabolites(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | private |
appendDependentModelObjects(const std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &dependentReactions, std::set< const CCopasiObject * > &dependentMetabolites, std::set< const CCopasiObject * > &dependentCompartments, std::set< const CCopasiObject * > &dependentModelValues, std::set< const CCopasiObject * > &dependentEvents) const | CModel | |
appendDependentModelValues(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | private |
appendDependentReactions(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependents) const | CModel | |
applyActiveParameterSet() | CModel | |
applyInitialValues() | CModel | |
AreaUnit enum name | CModel | |
AreaUnitNames | CModel | static |
Array enum value | CCopasiObject | protected |
ASSIGNMENT enum value | CModelEntity | |
buildApplyInitialValuesSequence() | CModel | private |
buildDependencyGraphs() | CModel | |
buildInitialRefreshSequence(std::set< const CCopasiObject * > &changedObjects) | CModel | |
buildInitialSequence() | CModel | private |
buildLinkZero() | CModel | |
buildMoieties() | CModel | |
buildNonSimulatedSequence() | CModel | private |
buildRedStoi() | CModel | |
buildSimulatedSequence() | CModel | private |
buildStateTemplate() | CModel | private |
buildStoi() | CModel | |
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
buildUserOrder() | CModel | private |
calculate() | CModelEntity | virtual |
calculateDerivatives(C_FLOAT64 *derivatives) | CModel | |
calculateDerivativesX(C_FLOAT64 *derivativesX) | CModel | |
calculateDivergence() const | CModel | |
calculateElasticityMatrix(const C_FLOAT64 &factor, const C_FLOAT64 &resolution) | CModel | |
calculateJacobian(CMatrix< C_FLOAT64 > &jacobian, const C_FLOAT64 &derivationFactor, const C_FLOAT64 &resolution) | CModel | |
calculateJacobianX(CMatrix< C_FLOAT64 > &jacobianX, const C_FLOAT64 &derivationFactor, const C_FLOAT64 &resolution) | CModel | |
calculateRootDerivatives(CVector< C_FLOAT64 > &rootDerivatives) | CModel | |
CAnnotation() | CAnnotation | |
CAnnotation(const CAnnotation &src) | CAnnotation | |
castObject(CCopasiObject *pObject) | CAnnotation | static |
castObject(const CCopasiObject *pObject) | CAnnotation | static |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiObject() | CCopasiObject | protected |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
clearDirectDependencies() | CCopasiObject | |
clearMoieties() | CModel | private |
clearRefresh() | CCopasiObject | |
cm enum value | CModel | |
cm2 enum value | CModel | |
CModel(const CModel &src) | CModel | private |
CModel(CCopasiContainer *pParent) | CModel | |
CModelEntity(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="ModelEntity", const unsigned C_INT32 &flag=CCopasiObject::Container|CCopasiObject::ValueDbl) | CModelEntity | |
CModelEntity(const CModelEntity &src, const CCopasiContainer *pParent=NULL) | CModelEntity | |
CObjectInterface() | CObjectInterface | inline |
compile() | CModel | privatevirtual |
compileEvents() | CModel | private |
compileIfNecessary(CProcessReport *pProcessReport) | CModel | |
Container enum value | CCopasiObject | protected |
convert2NonReversible() | CModel | |
createCompartment(const std::string &name, const C_FLOAT64 &volume=1.0) | CModel | |
createEvent(const std::string &name) | CModel | |
createMetabolite(const std::string &name, const std::string &compartment, const C_FLOAT64 &iconc=1.0, const CModelEntity::Status &status=CModelEntity::REACTIONS) | CModel | |
createModelValue(const std::string &name, const C_FLOAT64 &value=0.0) | CModel | |
createReaction(const std::string &name) | CModel | |
d enum value | CModel | |
DataModel enum value | CCopasiObject | protected |
DataObjectSet typedef | CCopasiObject | |
DataUpdateSequence typedef | CCopasiObject | |
DependencyType enum name | CModel | |
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
determineIsAutonomous() | CModel | private |
deterministic enum value | CModel | |
dimensionlessArea enum value | CModel | |
dimensionlessLength enum value | CModel | |
dimensionlessQuantity enum value | CModel | |
dimensionlessTime enum value | CModel | |
dimensionlessVolume enum value | CModel | |
dm enum value | CModel | |
dm2 enum value | CModel | |
EmptyList | CCopasiContainer | static |
evaluateRoots(CVectorCore< C_FLOAT64 > &rootValues, const bool &ignoreDiscrete) | CModel | |
findMetabByName(const std::string &Target) const | CModel | |
findMoiety(const std::string &Target) const | CModel | |
FIXED enum value | CModelEntity | |
fl enum value | CModel | |
Flag enum name | CCopasiObject | protected |
fm enum value | CModel | |
fm2 enum value | CModel | |
fMol enum value | CModel | |
forceCompile(CProcessReport *pProcessReport) | CModel | |
fs enum value | CModel | |
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
getAreaUnitEnum() const | CModel | |
getAreaUnitName() const | CModel | |
getAreaUnitsDisplayString() const | CModel | |
getAvogadro() const | CModel | |
getChildObjectUnits(const CCopasiObject *pObject) const | CModel | virtual |
getCN() const | CCopasiObject | virtual |
getCompartments() | CModel | |
getCompartments() const | CModel | |
getConcentrationRateUnitsDisplayString() const | CModel | |
getConcentrationUnitsDisplayString() const | CModel | |
getCorrespondingTransientObject(const CCopasiObject *pObject) const | CModel | |
getDeletedObjects() const | CModelEntity | virtual |
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
getEvents() | CModel | |
getEvents() const | CModel | |
getExpression() const | CModelEntity | |
getExpressionPtr() const | CModelEntity | |
getExpressionPtr() | CModelEntity | |
getFrequencyUnitsDisplayString() const | CModel | |
getInitialExpression() const | CModelEntity | |
getInitialExpressionPtr() const | CModelEntity | |
getInitialExpressionPtr() | CModelEntity | |
getInitialState() const | CModel | |
getInitialTime() const | CModel | |
getInitialUpdateSequence(const CMath::SimulationContextFlag &context, const CCopasiObject::DataObjectSet &changedObjects, const CCopasiObject::DataObjectSet &requestedObjects, CCopasiObject::DataUpdateSequence &updateSequence) const | CModel | |
getInitialValue() const | CModelEntity | |
getInitialValueReference() const | CModelEntity | |
getKey() const | CModel | virtual |
getL() const | CModel | |
getL0() const | CModel | |
getLengthUnitEnum() const | CModel | |
getLengthUnitName() const | CModel | |
getLengthUnitsDisplayString() const | CModel | |
getListOfConstantRefreshes() const | CModel | |
getListOfInitialRefreshes() const | CModel | |
getListOfNonSimulatedRefreshes() const | CModel | |
getListOfSimulatedRefreshes() const | CModel | |
getMathModel() const | CModel | |
getMathModel() | CModel | |
getMetabolites() const | CModel | |
getMetabolites() | CModel | |
getMetabolitesX() const | CModel | |
getMetabolitesX() | CModel | |
getMiriamAnnotation() const | CAnnotation | |
getModelParameterSet() const | CModel | |
getModelParameterSet() | CModel | |
getModelParameterSets() const | CModel | |
getModelParameterSets() | CModel | |
getModelType() const | CModel | |
getModelValues() const | CModel | |
getModelValues() | CModel | |
getMoieties() const | CModel | |
getNotes() const | CAnnotation | |
getNumAssignmentMetabs() const | CModel | |
getNumber2QuantityFactor() const | CModel | |
getNumDependentReactionMetabs() const | CModel | |
getNumIndependentReactionMetabs() const | CModel | |
getNumMetabs() const | CModel | |
getNumModelValues() const | CModel | |
getNumODEMetabs() const | CModel | |
getNumRoots() const | CModel | |
getNumVariableMetabs() const | CModel | |
getObject(const CCopasiObjectName &cn) const | CCopasiContainer | virtual |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | virtual |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | virtual |
getObjectType() const | CCopasiObject | |
getParticleFlux() const | CModel | |
getPrerequisites() const | CCopasiObject | virtual |
getProcessQueueExecutionTime() const | CModel | |
getQuantity2NumberFactor() const | CModel | |
getQuantityRateUnitsDisplayString() const | CModel | |
getQuantityUnitEnum() const | CModel | |
getQuantityUnitName() const | CModel | |
getQuantityUnitOldXMLName() const | CModel | |
getQuantityUnitsDisplayString() const | CModel | |
getRate() const | CModelEntity | |
getRateReference() const | CModelEntity | |
getReactions() | CModel | |
getReactions() const | CModel | |
getRedStoi() const | CModel | |
getRefresh() const | CCopasiObject | virtual |
getRootFinders() const | CModel | |
getSBMLId() const | CModelEntity | |
getState() const | CModel | |
getStateTemplate() const | CModel | |
getStateTemplate() | CModel | |
getStatus() const | CModelEntity | |
getStoi() const | CModel | |
getTime() const | CModel | |
getTimeUnitEnum() const | CModel | |
getTimeUnitName() const | CModel | |
getTimeUnitsDisplayString() const | CModel | |
getTotSteps() const | CModel | |
getTransientUpdateSequence(const CMath::SimulationContextFlag &context, const CCopasiObject::DataObjectSet &changedObjects, const CCopasiObject::DataObjectSet &requestedObjects, CCopasiObject::DataUpdateSequence &updateSequence) const | CModel | |
getTreesWithDiscontinuities() const | CModel | |
getUnits() const | CCopasiContainer | virtual |
getUnsupportedAnnotations() | CAnnotation | |
getUnsupportedAnnotations() const | CAnnotation | |
getUpdateMethod() const | CCopasiObject | |
getUpdateSequence(CMathDependencyGraph &dependencyGraph, const CMath::SimulationContextFlag &context, const CCopasiObject::DataObjectSet &changedObjects, const CCopasiObject::DataObjectSet &requestedObjects, CCopasiObject::DataUpdateSequence &updateSequence) const | CModel | private |
getUptoDateObjects() const | CModel | |
getValue() const | CModelEntity | |
getValueObject() const | CModelEntity | virtual |
getValuePointer() const | CModelEntity | virtual |
getValueReference() const | CModelEntity | |
getVolumeRateUnitsDisplayString() const | CModel | |
getVolumeUnitEnum() const | CModel | |
getVolumeUnitName() const | CModel | |
getVolumeUnitsDisplayString() const | CModel | |
Gui enum value | CCopasiObject | protected |
h enum value | CModel | |
handleUnusedMetabolites() | CModel | private |
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
hasReversibleReaction() const | CModel | |
hasUpdateMethod() const | CCopasiObject | |
initial enum value | CModel | |
initializeAtolVector(const C_FLOAT64 &baseTolerance, const bool &reducedModel) const | CModel | |
initializeMetabolites() | CModel | |
initObjects() | CModel | private |
isArray() const | CCopasiObject | |
isAutonomous() const | CModel | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isFixed() const | CModelEntity | inline |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStateVariable(const CCopasiObject *pObject) const | CModel | |
isStaticString() const | CCopasiObject | |
isUsed() const | CModelEntity | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueInt64() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
l enum value | CModel | |
LengthUnit enum name | CModel | |
LengthUnitNames | CModel | static |
load(CReadConfig &configBuffer) | CModel | |
m enum value | CModel | |
m2 enum value | CModel | |
m3 enum value | CModel | |
mActiveParameterSetKey | CModel | private |
mApplyInitialValuesRefreshes | CModel | private |
mAreaUnit | CModel | private |
Matrix enum value | CCopasiObject | protected |
mAvogadro | CModel | private |
mBuildInitialSequence | CModel | private |
mCompartments | CModel | private |
mCompileIsNecessary | CModel | private |
mCurrentState | CModel | private |
mElasticities | CModel | private |
mEvents | CModel | private |
microl enum value | CModel | |
microm enum value | CModel | |
microm2 enum value | CModel | |
microMol enum value | CModel | |
micros enum value | CModel | |
min enum value | CModel | |
mInitialDependencies | CModel | mutableprivate |
mInitialRefreshes | CModel | private |
mInitialState | CModel | private |
mIsAutonomous | CModel | private |
mJacobianPivot | CModel | private |
mKey | CAnnotation | protected |
ml enum value | CModel | |
mL | CModel | private |
mLengthUnit | CModel | private |
mLView | CModel | private |
mm enum value | CModel | |
mm2 enum value | CModel | |
mMetabolites | CModel | private |
mMetabolitesX | CModel | private |
mMoieties | CModel | private |
mMol enum value | CModel | |
mNonSimulatedRefreshes | CModel | private |
mNumber2QuantityFactor | CModel | private |
mNumMetabolitesAssignment | CModel | private |
mNumMetabolitesODE | CModel | private |
mNumMetabolitesReaction | CModel | private |
mNumMetabolitesReactionIndependent | CModel | private |
mNumMetabolitesUnused | CModel | private |
mObjects | CCopasiContainer | protected |
ModelEntity enum value | CCopasiObject | protected |
ModelType enum name | CModel | |
ModelTypeNames | CModel | static |
Mol enum value | CModel | |
mParameterSet | CModel | private |
mParameterSets | CModel | private |
mParticleFluxes | CModel | private |
mpCompileHandler | CModel | private |
mpExpression | CModelEntity | protected |
mPhysicalDependencies | CModel | private |
mpInitialExpression | CModelEntity | protected |
mpIValue | CModelEntity | protected |
mpIValueReference | CModelEntity | protected |
mpLinkMatrixAnnotation | CModel | private |
mpMathModel | CModel | private |
mpModel | CModelEntity | protected |
mpRateReference | CModelEntity | protected |
mpRedStoiAnnotation | CModel | private |
mpStoiAnnotation | CModel | private |
mpValue | CModelEntity | protected |
mpValueReference | CModelEntity | protected |
mQuantity2NumberFactor | CModel | private |
mQuantityUnit | CModel | private |
mRate | CModelEntity | protected |
mRedStoi | CModel | private |
mReorderNeeded | CModel | private |
ms enum value | CModel | |
mSBMLId | CModelEntity | protected |
mSimulatedRefreshes | CModel | private |
mSimulatedUpToDateObjects | CModel | private |
mStateTemplate | CModel | private |
mSteps | CModel | private |
mStoi | CModel | private |
mStoiInternal | CModel | private |
mTimeUnit | CModel | private |
mTransientDependencies | CModel | mutableprivate |
mType | CModel | private |
mustBeDeleted(const DataObjectSet &deletedObjects) const | CModelEntity | virtual |
mValues | CModel | private |
mVolumeUnit | CModel | private |
NameVector enum value | CCopasiObject | protected |
nl enum value | CModel | |
nm enum value | CModel | |
nm2 enum value | CModel | |
nMol enum value | CModel | |
NonUniqueName enum value | CCopasiObject | protected |
ns enum value | CModel | |
number enum value | CModel | |
objectMap typedef | CCopasiContainer | |
ObjectSet typedef | CObjectInterface | |
ODE enum value | CModelEntity | |
OldMinute enum value | CModel | |
OldXML enum value | CModel | |
operator=(const CModel &src) | CModel | private |
operator==(const CAnnotation &rhs) const | CAnnotation | |
physical enum value | CModel | |
pl enum value | CModel | |
pm enum value | CModel | |
pm2 enum value | CModel | |
pMol enum value | CModel | |
print(std::ostream *ostream) const | CCopasiObject | virtual |
printParameterOverview() | CModel | |
processQueue(const C_FLOAT64 &time, const bool &equality, CProcessQueue::resolveSimultaneousAssignments pResolveSimultaneousAssignments) | CModel | |
processRoots(const C_FLOAT64 &time, const bool &equality, const bool &correct, const CVector< C_INT > &roots) | CModel | |
ps enum value | CModel | |
QuantityUnit enum name | CModel | |
QuantityUnitNames | CModel | static |
QuantityUnitOldXMLNames | CModel | static |
REACTIONS enum value | CModelEntity | |
Reference enum value | CCopasiObject | protected |
refreshActiveParameterSet() | CModel | |
refreshInitialValue() | CModelEntity | virtual |
remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
removeCompartment(const size_t index, const bool &recursive=true) | CModel | |
removeCompartment(const std::string &key, const bool &recursive=true) | CModel | |
removeCompartment(const CCompartment *pCompartment, const bool &recursive=true) | CModel | |
removeDependentModelObjects(const std::set< const CCopasiObject * > &deletedObjects) | CModel | |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
removeEvent(const size_t index, const bool &recursive=true) | CModel | |
removeEvent(const std::string &key, const bool &recursive=true) | CModel | |
removeEvent(const CEvent *pEvent, const bool &recursive=true) | CModel | |
removeLocalReactionParameter(const std::string &key, const bool &recursive=true) | CModel | |
removeMetabolite(const std::string &key, const bool &recursive=true) | CModel | |
removeMetabolite(const size_t index, const bool &recursive=true) | CModel | |
removeMetabolite(const CMetab *pMetabolite, const bool &recursive=true) | CModel | |
removeModelValue(const CModelValue *pModelValue, const bool &recursive=true) | CModel | |
removeModelValue(const std::string &key, const bool &recursive=true) | CModel | |
removeModelValue(const size_t index, const bool &recursive=true) | CModel | |
removeReaction(const CReaction *pReaction, const bool &recursive=true) | CModel | |
removeReaction(const std::string &key, const bool &recursive=true) | CModel | |
removeReaction(const size_t index, const bool &recursive=true) | CModel | |
removeUnsupportedAnnotation(const std::string &name) | CAnnotation | |
replaceUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
Root enum value | CCopasiObject | protected |
s enum value | CModel | |
Separator enum value | CCopasiObject | protected |
setAreaUnit(const std::string &name) | CModel | |
setAreaUnit(const CModel::AreaUnit &unit) | CModel | |
setAvogadro(const C_FLOAT64 &avogadro) | CModel | |
setCompileFlag(bool flag=true) | CModel | |
setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
setExpression(const std::string &expression) | CModelEntity | |
setExpressionPtr(CExpression *pExpression) | CModelEntity | |
setInitialExpression(const std::string &expression) | CModelEntity | |
setInitialExpressionPtr(CExpression *pExpression) | CModelEntity | |
setInitialState(const CState &state) | CModel | |
setInitialTime(const C_FLOAT64 &time) | CModel | |
setInitialValue(const C_FLOAT64 &initialValue) | CModelEntity | virtual |
setInitialValuePtr(C_FLOAT64 *pInitialValue) | CModelEntity | |
setLengthUnit(const std::string &name) | CModel | |
setLengthUnit(const CModel::LengthUnit &unit) | CModel | |
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
setModelType(const ModelType &modelType) | CModel | |
setNotes(const std::string ¬es) | CAnnotation | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CModelEntity | virtual |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setQuantityUnit(const std::string &name) | CModel | |
setQuantityUnit(const CModel::QuantityUnit &unit) | CModel | |
setRate(const C_FLOAT64 &rate) | CModelEntity | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
setSBMLId(const std::string &id) | CModelEntity | |
setState(const CState &state) | CModel | |
setStatus(const CModelEntity::Status &status) | CModelEntity | virtual |
setTime(const C_FLOAT64 &time) | CModel | |
setTimeUnit(const std::string &name) | CModel | |
setTimeUnit(const CModel::TimeUnit &unit) | CModel | |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
setUsed(const bool &used) | CModelEntity | |
setValue(const C_FLOAT64 &value) | CModelEntity | virtual |
setValuePtr(C_FLOAT64 *pValue) | CModelEntity | |
setVolumeUnit(const std::string &name) | CModel | |
setVolumeUnit(const CModel::VolumeUnit &unit) | CModel | |
smpRenameHandler | CCopasiObject | protectedstatic |
StaticString enum value | CCopasiObject | protected |
Status enum name | CModelEntity | |
StatusName | CModelEntity | static |
stochastic enum value | CModel | |
suitableForStochasticSimulation() const | CModel | |
TIME enum value | CModelEntity | |
TimeUnit enum name | CModel | |
TimeUnitNames | CModel | static |
transient enum value | CModel | |
UnsupportedAnnotation typedef | CAnnotation | |
updateInitialValues() | CModel | |
updateInitialValues(std::set< const CCopasiObject * > &changedObjects) | CModel | |
updateInitialValues(const CCopasiObject *changedObject) | CModel | |
updateMatrixAnnotations() | CModel | private |
updateMoietyValues() | CModel | private |
updateNonSimulatedValues(void) | CModel | |
UpdateSequence typedef | CObjectInterface | |
updateSimulatedValues(const bool &updateMoieties) | CModel | |
ValueBool enum value | CCopasiObject | protected |
ValueDbl enum value | CCopasiObject | protected |
ValueInt enum value | CCopasiObject | protected |
ValueInt64 enum value | CCopasiObject | protected |
ValueString enum value | CCopasiObject | protected |
Vector enum value | CCopasiObject | protected |
VolumeUnit enum name | CModel | |
VolumeUnitNames | CModel | static |
XMLStatus | CModelEntity | static |
~CAnnotation() | CAnnotation | virtual |
~CCopasiContainer() | CCopasiContainer | virtual |
~CCopasiObject() | CCopasiObject | virtual |
~CModel() | CModel | |
~CModelEntity() | CModelEntity | |
~CObjectInterface() | CObjectInterface | inlinevirtual |