__SIZE enum value | CDataObject | |
add(CDataObject *pObject, const bool &adopt=true) | CDataContainer | virtual |
addGroup(const std::string &name) | CCopasiParameterGroup | |
addIssue(const CIssue &issue) | CDataObject | |
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected |
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected |
addParameter(const CCopasiParameter ¶meter) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) | CCopasiParameterGroup | inline |
addParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
addReference(const CDataContainer *pReference) | CDataObject | |
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected |
allocateValidValues(const Type &type, void *&pValidValues) | CCopasiParameter | static |
allocateValue(const Type &type, void *&pValue) | CCopasiParameter | static |
appendDeletedDependentData(CUndoData &undoData) const | CDataContainer | virtual |
applyData(const CData &data, CUndoData::CChangeSet &changes) | CCopasiParameterGroup | virtual |
Array enum value | CDataObject | |
assertGroup(const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) | CCopasiParameterGroup | |
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) | CCopasiParameterGroup | inline |
assignDefault(const void *pDefault) | CCopasiParameter | private |
assignValidValues(const void *pValidValues) | CCopasiParameter | private |
assignValue(const Type &type, void *&pValue, const void *pNewValue) | CCopasiParameter | static |
assignValue(const void *pValue) | CCopasiParameter | private |
beginIndex() const | CCopasiParameterGroup | |
beginName() const | CCopasiParameterGroup | |
calculateValue() override | CDataObject | virtual |
CConfigurationFile(const std::string &name="Configuration", const CDataContainer *pParent=NO_PARENT) | CConfigurationFile | |
CConfigurationFile(const CConfigurationFile &src, const CDataContainer *pParent) | CConfigurationFile | |
CCopasiParameter(const CCopasiParameter &src) | CCopasiParameter | protected |
CCopasiParameter() | CCopasiParameter | private |
CCopasiParameter(const CCopasiParameter &src, const CDataContainer *pParent) | CCopasiParameter | |
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter") | CCopasiParameter | |
CCopasiParameterGroup() | CCopasiParameterGroup | protected |
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL) | CCopasiParameterGroup | |
CCopasiParameterGroup(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup") | CCopasiParameterGroup | |
CDataContainer() | CDataContainer | private |
CDataContainer(const CDataContainer &src) | CDataContainer | protected |
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | |
CDataContainer(const CDataContainer &src, const CDataContainer *pParent) | CDataContainer | |
CDataObject() | CDataObject | protected |
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataObject | protected |
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL) | CDataObject | |
clear() | CCopasiParameterGroup | |
CObjectInterface() | CObjectInterface | |
CObjectInterface(const CObjectInterface &src) | CObjectInterface | |
const_name_iterator typedef | CCopasiParameterGroup | |
Container enum value | CDataObject | |
ContainerList typedef | CObjectInterface | |
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const | CCopasiParameterGroup | virtual |
createValue() | CCopasiParameter | private |
CUndoObjectInterface() | CUndoObjectInterface | |
CUndoObjectInterface(const CUndoObjectInterface &src) | CUndoObjectInterface | |
DataModel enum value | CDataObject | |
DataObject(const CObjectInterface *pInterface) | CObjectInterface | static |
DataObjectSet typedef | CDataObject | |
deleteValidValues(const Type &type, void *&pValidValues) | CCopasiParameter | static |
deleteValue(const Type &type, void *&pValue) | CCopasiParameter | static |
destruct() override | CDataObject | virtual |
DisplayName enum value | CDataObject | |
displayPopulations() const | CConfigurationFile | |
elements typedef | CCopasiParameterGroup | |
elevateChildren() | CConfigurationFile | virtual |
EmptyList | CDataContainer | static |
enableAdditionalOptimizationParameters() const | CConfigurationFile | |
endIndex() const | CCopasiParameterGroup | |
endName() const | CCopasiParameterGroup | |
eUserInterfaceFlag enum name | CCopasiParameter | |
Flag enum name | CDataObject | |
fromData(const CData &data, CUndoObjectInterface *pParent) | CCopasiParameter | static |
generateUuid() | CUndoObjectInterface | |
getApplicationFont() const | CConfigurationFile | |
getCheckForUpdates() | CConfigurationFile | |
getChildObjectUnits(const CDataObject *pObject) const | CDataContainer | virtual |
getCN() const override | CCopasiParameter | virtual |
getCurrentAuthorEmail() const | CConfigurationFile | |
getCurrentAuthorFamilyName() const | CConfigurationFile | |
getCurrentAuthorGivenName() const | CConfigurationFile | |
getCurrentAuthorOrganization() const | CConfigurationFile | |
getDataObject() const override | CDataObject | virtual |
getDefault() const | CCopasiParameter | inline |
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const | CDataContainer | |
getDisableJIT() const | CConfigurationFile | |
getDoublePrecision() const | CConfigurationFile | |
getElementTemplates() | CCopasiParameterGroup | |
getElementTemplates() const | CCopasiParameterGroup | |
getGroup(const std::string &name) | CCopasiParameterGroup | |
getGroup(const std::string &name) const | CCopasiParameterGroup | |
getGroup(const size_t &index) | CCopasiParameterGroup | |
getGroup(const size_t &index) const | CCopasiParameterGroup | |
getIndex(const CDataObject *pObject) const | CCopasiParameterGroup | virtual |
getIndex(const std::string &name) const | CCopasiParameterGroup | |
getKey(const std::string &name) const | CCopasiParameterGroup | |
getKey(const size_t &index) const | CCopasiParameterGroup | |
CCopasiParameter::getKey() const override | CCopasiParameter | virtual |
getName(const size_t &index) const | CCopasiParameterGroup | virtual |
getObject(const CCommonName &cn) const | CCopasiParameterGroup | virtual |
getObjectAncestor(const std::string &type) const | CDataObject | |
getObjectDataModel() const | CDataObject | |
getObjectDisplayName() const override | CCopasiParameter | virtual |
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName) | CObjectInterface | static |
getObjectFromCN(const CCommonName &cn) const | CDataObject | |
getObjectName() const | CDataObject | |
getObjectParent() const | CDataObject | |
getObjects() const | CDataContainer | virtual |
getObjects() | CDataContainer | virtual |
getObjectType() const | CDataObject | |
getParameter(std::string name) | CCopasiParameterGroup | |
getParameter(std::string name) const | CCopasiParameterGroup | |
getParameter(const size_t &index) | CCopasiParameterGroup | |
getParameter(const size_t &index) const | CCopasiParameterGroup | |
getPrerequisites() const override | CDataObject | virtual |
getProxyPassword() const | CConfigurationFile | |
getProxyPort() const | CConfigurationFile | |
getProxyServer() const | CConfigurationFile | |
getProxyUser() const | CConfigurationFile | |
getRecentFiles() | CConfigurationFile | |
getRecentMIRIAMResources() | CConfigurationFile | |
getRecentSBMLFiles() | CConfigurationFile | |
getRecentSEDMLFiles() | CConfigurationFile | |
getType(const std::string &name) const | CCopasiParameterGroup | |
getType(const size_t &index) const | CCopasiParameterGroup | |
CCopasiParameter::getType() const | CCopasiParameter | |
getUniqueParameterName(const CCopasiParameter *pParameter) const | CCopasiParameterGroup | |
getUnits() const override | CDataContainer | virtual |
getUserInterfaceFlag() const | CCopasiParameter | |
getUuid() const | CUndoObjectInterface | |
getValidity() const override | CDataObject | virtual |
getValidValues() const | CCopasiParameter | inline |
getValidValues() | CCopasiParameter | inline |
getValidValuesPointer() const | CCopasiParameter | |
getValue(const std::string &name) const | CCopasiParameterGroup | inline |
getValue(const std::string &name) | CCopasiParameterGroup | inline |
getValue(const size_t &index) const | CCopasiParameterGroup | inline |
getValue(const size_t &index) | CCopasiParameterGroup | inline |
CCopasiParameter::getValue() const | CCopasiParameter | inline |
CCopasiParameter::getValue() | CCopasiParameter | inline |
getValueObject() const override | CDataContainer | virtual |
getValuePointer() const override | CCopasiParameter | virtual |
getValueReference() const | CCopasiParameter | |
getWorkingDirectory() const | CConfigurationFile | |
Gui enum value | CDataObject | |
hasFlag(const Flag &flag) const | CDataObject | |
hasValidValues() const | CCopasiParameter | |
haveTemplate() const | CCopasiParameterGroup | |
index_iterator typedef | CCopasiParameterGroup | |
initializeParameter() | CConfigurationFile | private |
initObjects() | CDataContainer | protected |
insert(const CData &data) | CCopasiParameterGroup | virtual |
inValidValues(const CType &value) const | CCopasiParameter | inlineprivate |
isBasic() const | CCopasiParameter | |
isDefault() const | CCopasiParameter | |
isEditable() const | CCopasiParameter | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override | CDataObject | virtual |
isUnsupported() const | CCopasiParameter | |
isValidValue(const C_FLOAT64 &value) const | CCopasiParameter | |
isValidValue(const C_INT32 &value) const | CCopasiParameter | |
isValidValue(const unsigned C_INT32 &value) const | CCopasiParameter | |
isValidValue(const bool &value) const | CCopasiParameter | |
isValidValue(const std::string &value) const | CCopasiParameter | |
isValidValue(const CCommonName &value) const | CCopasiParameter | |
isValidValue(const std::vector< CCopasiParameter * > &value) const | CCopasiParameter | |
isValidValue(const CType &) const | CCopasiParameter | inline |
load() | CConfigurationFile | virtual |
mAggregateValidity | CDataObject | private |
Matrix enum value | CDataObject | |
mKey | CCopasiParameter | protected |
mObjectDisplayName | CDataObject | mutableprivate |
mObjectFlag | CDataObject | private |
mObjectName | CDataObject | private |
mObjects | CDataContainer | protected |
mObjectType | CDataObject | private |
ModelEntity enum value | CDataObject | |
mpApplicationFont | CConfigurationFile | private |
mpCheckForUpdates | CConfigurationFile | private |
mpCurrentAuthorEmail | CConfigurationFile | private |
mpCurrentAuthorFamilyName | CConfigurationFile | private |
mpCurrentAuthorGivenName | CConfigurationFile | private |
mpCurrentAuthorOrganization | CConfigurationFile | private |
mpDefault | CCopasiParameter | protected |
mpDisableJIT | CConfigurationFile | private |
mpDisplayIssueKinds | CConfigurationFile | private |
mpDisplayIssueSeverity | CConfigurationFile | private |
mpDisplayPopulations | CConfigurationFile | private |
mpElementTemplates | CCopasiParameterGroup | private |
mpEnableAdditionalOptimizationParameters | CConfigurationFile | private |
mpNormalizePerExperiment | CConfigurationFile | private |
mpObjectDisplayName | CDataObject | mutableprivate |
mpObjectName | CDataObject | mutableprivate |
mpObjectParent | CDataObject | private |
mpPrecision | CConfigurationFile | private |
mpProxyPass | CConfigurationFile | private |
mpProxyPort | CConfigurationFile | private |
mpProxyServer | CConfigurationFile | private |
mpProxyUser | CConfigurationFile | private |
mpRecentFiles | CConfigurationFile | private |
mpRecentMIRIAMResources | CConfigurationFile | private |
mpRecentSBMLFiles | CConfigurationFile | private |
mpRecentSEDMLFiles | CConfigurationFile | private |
mPrerequisits | CDataObject | protected |
mpResizeToContents | CConfigurationFile | private |
mpUseAdvancedEditing | CConfigurationFile | private |
mpUseAdvancedSliders | CConfigurationFile | private |
mpUseOpenGL | CConfigurationFile | private |
mpUuid | CUndoObjectInterface | private |
mpValidateUnits | CConfigurationFile | private |
mpValidValues | CCopasiParameter | protected |
mpValue | CCopasiParameter | protected |
mpValueReference | CCopasiParameter | mutableprotected |
mpWorkingDirectory | CConfigurationFile | private |
mReferencedValidities | CDataObject | private |
mReferences | CDataObject | protected |
mType | CCopasiParameter | private |
mUserInterfaceFlag | CCopasiParameter | protected |
mUuidLocked | CUndoObjectInterface | private |
mValidity | CObjectInterface | mutableprotected |
name_iterator typedef | CCopasiParameterGroup | |
NameVector enum value | CDataObject | |
NonUniqueName enum value | CDataObject | |
normalizePerExperiment() const | CConfigurationFile | |
objectMap typedef | CDataContainer | |
objectRenamed(CDataObject *pObject, const std::string &oldName) | CDataContainer | |
ObjectSet typedef | CObjectInterface | |
operator=(const CCopasiParameterGroup &rhs) | CConfigurationFile | |
operator=(const CConfigurationFile &rhs) | CConfigurationFile | |
CCopasiParameter::operator=(const CCopasiParameter &rhs) | CCopasiParameter | |
prerequisitsContains(const DataObjectSet &objects) const | CDataObject | |
print(std::ostream *ostream) const | CCopasiParameterGroup | virtual |
Reference enum value | CDataObject | |
refreshAggregateValidity() | CDataObject | private |
remove(CDataObject *pObject) | CCopasiParameterGroup | virtual |
removeIssue(const CIssue &issue) | CDataObject | |
removeParameter(const std::string &name) | CCopasiParameterGroup | |
removeParameter(const size_t &index) | CCopasiParameterGroup | |
removeParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
removeReference(const CDataContainer *pReference) | CDataObject | |
resizeToContents() const | CConfigurationFile | |
Root enum value | CDataObject | |
sanitizeObjectName(std::string &name) | CDataObject | static |
save() | CConfigurationFile | virtual |
Separator enum value | CDataObject | |
setApplicationFont(const std::string &applicationFont) | CConfigurationFile | |
setCurrentAuthorEmail(const std::string &CurrentAuthorEmail) | CConfigurationFile | |
setCurrentAuthorFamilyName(const std::string &CurrentAuthorFamilyName) | CConfigurationFile | |
setCurrentAuthorGivenName(const std::string &CurrentAuthorGivenName) | CConfigurationFile | |
setCurrentAuthorOrganization(const std::string &CurrentAuthorOrganization) | CConfigurationFile | |
setDefault(const CType &defaultValue) | CCopasiParameter | inline |
setDefault(const std::vector< CCopasiParameter * > &defaultValue) | CCopasiParameter | |
setDisableJIT(bool disableJIT) | CConfigurationFile | |
setDisplayPopulations(bool flag) | CConfigurationFile | |
setDoublePrecision(C_INT32 precision) | CConfigurationFile | |
setEnableAdditionalOptimizationParameters(bool enableAdditionalOptimizationParameters) | CConfigurationFile | |
setNormalizePerExperiment(bool flag) | CConfigurationFile | |
setObjectName(const std::string &name) | CDataObject | |
setObjectParent(const CDataContainer *pParent) override | CCopasiParameter | virtual |
setProxyPassword(const std::string &proxyPassword) | CConfigurationFile | |
setProxyPort(C_INT32 proxyPort) | CConfigurationFile | |
setProxyServer(const std::string &proxyServer) | CConfigurationFile | |
setProxyUser(const std::string &proxyUser) | CConfigurationFile | |
setRecentMIRIAMResources(const CMIRIAMResources &miriamResources) | CConfigurationFile | |
setResizeToContents(bool flag) | CConfigurationFile | |
setUseAdvancedEditing(bool useAdvancedEditing) | CConfigurationFile | |
setUseAdvancedSliders(bool useAdvancedSliders) | CConfigurationFile | |
setUseOpenGL(bool useOpenGL) | CConfigurationFile | |
setUserInterfaceFlag(const UserInterfaceFlag &flag) | CCopasiParameterGroup | virtual |
setUuid(const xg::Guid &uuid) | CUndoObjectInterface | |
setUuid(const std::string &uuid) | CUndoObjectInterface | |
setValidateUnits(bool validateUnits) | CConfigurationFile | |
setValidValues(const std::vector< std::pair< CType, CType > > &validValues) | CCopasiParameter | inline |
setValidValues(const CEnumAnnotation< CType, Enum > &validValues) | CCopasiParameter | inline |
setValue(const std::string &name, const CType &value) | CCopasiParameterGroup | inline |
setValue(const size_t &index, const CType &value) | CCopasiParameterGroup | inline |
CCopasiParameter::setValue(const CType &value) | CCopasiParameter | inline |
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value) | CCopasiParameter | |
setWorkingDirectory(const std::string &workingDirectory) | CConfigurationFile | |
showItemIssues(CIssue::eKind kind) const | CConfigurationFile | |
size(const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const | CCopasiParameterGroup | |
StaticString enum value | CDataObject | |
swap(const size_t &iFrom, const size_t &iTo) | CCopasiParameterGroup | |
swap(index_iterator &from, index_iterator &to) | CCopasiParameterGroup | |
toData() const | CCopasiParameterGroup | virtual |
Type enum name | CCopasiParameter | |
TypeName | CCopasiParameter | static |
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject) | CCopasiParameterGroup | virtual |
useAdvancedEditing() const | CConfigurationFile | |
useAdvancedSliders() const | CConfigurationFile | |
useOpenGL() const | CConfigurationFile | |
UserInterfaceFlag typedef | CCopasiParameter | |
validateUnits() const | CConfigurationFile | |
validityChanged(const CValidity &changedValidity) override | CDataObject | virtual |
validityRemoved(const CValidity &changedValidity) | CDataObject | |
ValueBool enum value | CDataObject | |
ValueDbl enum value | CDataObject | |
ValueInt enum value | CDataObject | |
ValueInt64 enum value | CDataObject | |
ValueString enum value | CDataObject | |
Vector enum value | CDataObject | |
XMLType | CCopasiParameter | static |
~CConfigurationFile() | CConfigurationFile | virtual |
~CCopasiParameter() | CCopasiParameter | virtual |
~CCopasiParameterGroup() | CCopasiParameterGroup | virtual |
~CDataContainer() | CDataContainer | virtual |
~CDataObject() | CDataObject | virtual |
~CObjectInterface() | CObjectInterface | virtual |
~CUndoObjectInterface() | CUndoObjectInterface | virtual |