CMetab Member List

This is the complete list of members for CMetab, including all inherited members.

__SIZE enum value	CDataObject
add(CDataObject *pObject, const bool &adopt=true)	CDataContainer	virtual
addIssue(const CIssue &issue)	CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addReference(const CDataContainer *pReference)	CDataObject
addUnsupportedAnnotation(const std::string &name, const std::string &xml)	CAnnotation
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
allocateMiriamInfo(CDataContainer *pParent)	CAnnotation	static
appendDeletedDependentData(CUndoData &undoData) const	CDataContainer	virtual
applyData(const CData &data, CUndoData::CChangeSet &changes) override	CMetab	virtual
Array enum value	CDataObject
calculate() override	CMetab	virtual
calculateValue() override	CDataObject	virtual
CAnnotation()	CAnnotation
CAnnotation(const CAnnotation &src)	CAnnotation
castObject(CDataObject *pObject)	CAnnotation	static
castObject(const CDataObject *pObject)	CAnnotation	static
CDataContainer()	CDataContainer	private
CDataContainer(const CDataContainer &src)	CDataContainer	protected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)	CDataContainer
CDataObject()	CDataObject	protected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataObject	protected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)	CDataObject
cleanup()	CMetab
CMetab(const CMetab &src)	CMetab	protected
CMetab(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT)	CMetab
CMetab(const CMetab &src, const CDataContainer *pParent)	CMetab
CModelEntity(const CModelEntity &src)	CModelEntity	protected
CModelEntity(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT, const std::string &type="ModelEntity", const CFlags< Flag > &flag=CFlags< Flag >::None)	CModelEntity
CModelEntity(const CModelEntity &src, const CDataContainer *pParent)	CModelEntity
CMoiety::add(C_FLOAT64 value, CMetab *pMetabolite)	CMetab	friend
CObjectInterface()	CObjectInterface
CObjectInterface(const CObjectInterface &src)	CObjectInterface
compile() override	CMetab	virtual
compileIsInitialValueChangeAllowed()	CMetab
Container enum value	CDataObject
Container2Info	CAnnotation	privatestatic
ContainerList typedef	CObjectInterface
convertToConcentration(const C_FLOAT64 &number, const CCompartment &compartment)	CMetab	static
convertToNumber(const C_FLOAT64 &concentration, const CCompartment &compartment)	CMetab	static
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const override	CMetab	virtual
CUndoObjectInterface()	CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)	CUndoObjectInterface
DataModel enum value	CDataObject
DataObject(const CObjectInterface *pInterface)	CObjectInterface	static
DataObjectSet typedef	CDataObject
destruct() override	CDataObject	virtual
DisplayName enum value	CDataObject
EmptyList	CDataContainer	static
Flag enum name	CDataObject
freeMiriamInfo(CDataContainer *pParent)	CAnnotation	static
fromData(const CData &data, CUndoObjectInterface *pParent)	CMetab	static
generateUuid()	CUndoObjectInterface
getChildObjectUnits(const CDataObject *pObject) const override	CMetab	virtual
getCN() const override	CDataObject	virtual
getCompartment() const	CMetab
getConcentration() const	CMetab
getConcentrationRate() const	CMetab
getConcentrationRateReference() const	CMetab
getConcentrationReference() const	CMetab
getCountOfDependentReactions() const	CMetab
getDataObject() const override	CDataObject	virtual
getDefaultNoiseExpression() const	CModelEntity
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const	CDataContainer
getExpression() const	CModelEntity
getExpressionPtr() const	CModelEntity
getExpressionPtr()	CModelEntity
getIndex(const CDataObject *pObject) const	CDataContainer	virtual
getInitialConcentration() const	CMetab
getInitialConcentrationReference() const	CMetab
getInitialExpression() const	CModelEntity
getInitialExpressionPtr() const	CModelEntity
getInitialExpressionPtr()	CModelEntity
getInitialValue() const	CModelEntity
getInitialValueReference() const	CModelEntity
getIntensiveNoiseReference() const	CMetab
getKey() const override	CModelEntity	virtual
getMiriamAnnotation() const	CAnnotation
getModel() const	CModelEntity
getMoiety() const	CMetab
getNoiseExpression() const	CModelEntity
getNoiseExpressionPtr() const	CModelEntity
getNoiseExpressionPtr()	CModelEntity
getNoiseReference() const	CModelEntity
getNotes() const	CAnnotation
getObject(const CCommonName &cn) const override	CDataContainer	virtual
getObjectAncestor(const std::string &type) const	CDataObject
getObjectDataModel() const	CDataObject
getObjectDisplayName() const override	CMetab	virtual
getObjectFromCN(const CCommonName &cn) const	CDataObject
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)	CObjectInterface	static
getObjectName() const	CDataObject
getObjectParent() const	CDataObject
getObjects() const	CDataContainer	virtual
getObjects()	CDataContainer	virtual
getObjectType() const	CDataObject
getPrerequisites() const override	CDataObject	virtual
getRate() const	CModelEntity
getRateReference() const	CModelEntity
getSBMLId() const	CModelEntity
getStatus() const	CModelEntity
getTransitionTime() const	CMetab
getTransitionTimeReference() const	CMetab
getUnitExpression() const	CModelEntity	virtual
getUnits() const override	CMetab	virtual
getUnsupportedAnnotations()	CAnnotation
getUnsupportedAnnotations() const	CAnnotation
getUuid() const	CUndoObjectInterface
getValidity() const override	CDataObject	virtual
getValue() const	CModelEntity
getValueObject() const override	CMetab	virtual
getValuePointer() const override	CMetab	virtual
getValueReference() const	CModelEntity
Gui enum value	CDataObject
hasFlag(const Flag &flag) const	CDataObject
hasNoise() const	CModelEntity
initCompartment(const CCompartment *pCompartment=NULL)	CMetab
initMiriamAnnotation(const std::string &newId)	CAnnotation
initObjects()	CMetab	private
insert(const CData &data) override	CDataContainer	virtual
isDependent() const	CMetab
isFixed() const	CModelEntity	inline
isInitialValueChangeAllowed(CCore::Framework framework) const	CMetab
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override	CDataObject	virtual
isUsed() const	CModelEntity
isValidXML(const std::string &xml)	CAnnotation	privatestatic
load(CReadConfig &configbuffer)	CMetab
mAggregateValidity	CDataObject	private
Matrix enum value	CDataObject
mConc	CMetab	private
mConcRate	CMetab	private
mHasNoise	CModelEntity	protected
mIConc	CMetab	private
mIntensiveNoise	CMetab	private
mIsInitialConcentrationChangeAllowed	CMetab	private
mIsInitialParticleNumberChangeAllowed	CMetab	private
mIValue	CModelEntity	protected
mKey	CAnnotation	protected
mMiriamAnnotation	CAnnotation	private
mNoise	CModelEntity	protected
mNotes	CAnnotation	private
mObjectDisplayName	CDataObject	mutableprivate
mObjectFlag	CDataObject	private
mObjectName	CDataObject	private
mObjects	CDataContainer	protected
mObjectType	CDataObject	private
ModelEntity enum value	CDataObject
mpCompartment	CMetab	private
mpConcRateReference	CMetab	protected
mpConcReference	CMetab	protected
mpExpression	CModelEntity	protected
mpIConcReference	CMetab	protected
mpInitialExpression	CModelEntity	protected
mpIntensiveNoiseReference	CMetab	protected
mpIValueReference	CModelEntity	protected
mpModel	CModelEntity	mutableprotected
mpMoiety	CMetab	private
mpNoiseExpression	CModelEntity	protected
mpNoiseReference	CModelEntity	protected
mpObjectDisplayName	CDataObject	mutableprivate
mpObjectName	CDataObject	mutableprivate
mpObjectParent	CDataObject	private
mpRateReference	CModelEntity	protected
mPrerequisits	CDataObject	protected
mpTTReference	CMetab	protected
mpUuid	CUndoObjectInterface	private
mpValueReference	CModelEntity	protected
mRate	CModelEntity	protected
mReferencedValidities	CDataObject	private
mReferences	CDataObject	protected
mSBMLId	CModelEntity	mutableprotected
mStatus	CModelEntity	private
mTT	CMetab	private
mUnitExpression	CModelEntity	protected
mUnsupportedAnnotations	CAnnotation	private
mUsed	CModelEntity	private
mUuidLocked	CUndoObjectInterface	private
mValidity	CObjectInterface	mutableprotected
mValue	CModelEntity	protected
mXMLId	CAnnotation	private
NameVector enum value	CDataObject
NonUniqueName enum value	CDataObject
objectMap typedef	CDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)	CDataContainer
ObjectSet typedef	CObjectInterface
operator<<(std::ostream &os, const CMetab &d)	CMetab	friend
operator=(const CMetabOld &rhs)	CMetab
operator==(const CAnnotation &rhs) const	CAnnotation
prerequisitsContains(const DataObjectSet &objects) const	CDataObject
print(std::ostream *ostream) const override	CDataObject	virtual
Reference enum value	CDataObject
refreshAggregateValidity()	CDataObject	private
remove(CDataObject *pObject)	CDataContainer	virtual
removeIssue(const CIssue &issue)	CDataObject
removeReference(const CDataContainer *pReference)	CDataObject
removeUnsupportedAnnotation(const std::string &name)	CAnnotation
replaceUnsupportedAnnotation(const std::string &name, const std::string &xml)	CAnnotation
Root enum value	CDataObject
sanitizeObjectName(std::string &name)	CDataObject	static
Separator enum value	CDataObject
setCompartment(const std::string &compName)	CMetab
setConcentration(const C_FLOAT64 concentration)	CMetab
setDependsOnMoiety(const CMoiety *pMoiety)	CMetab
setExpression(const std::string &expression)	CModelEntity
setExpressionPtr(CExpression *pExpression)	CModelEntity
setHasNoise(const bool &hasNoise)	CModelEntity
setInitialConcentration(const C_FLOAT64 &initialConcentration)	CMetab
setInitialExpression(const std::string &expression)	CModelEntity
setInitialExpressionPtr(CExpression *pExpression)	CModelEntity
setInitialValue(const C_FLOAT64 &initialValue)	CModelEntity	virtual
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId)	CAnnotation
setNoiseExpression(const std::string &expression)	CModelEntity
setNoiseExpressionPtr(CExpression *pExpression)	CModelEntity
setNotes(const std::string &notes)	CAnnotation
setObjectName(const std::string &name)	CDataObject
setObjectParent(const CDataContainer *pParent) override	CMetab	virtual
setRate(const C_FLOAT64 &rate)	CModelEntity
setSBMLId(const std::string &id) const	CModelEntity
setStatus(const CModelEntity::Status &status)	CModelEntity
setTransitionTime(const C_FLOAT64 &transitionTime)	CMetab
setUnitExpression(std::string unitExpression)	CModelEntity	virtual
setUsed(const bool &used)	CModelEntity
setUuid(const xg::Guid &uuid)	CUndoObjectInterface
setUuid(const std::string &uuid)	CUndoObjectInterface
setValue(const C_FLOAT64 &value)	CModelEntity	virtual
StaticString enum value	CDataObject
Status enum name	CModelEntity
StatusName	CModelEntity	static
toData() const override	CMetab	virtual
UnsupportedAnnotation typedef	CAnnotation
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)	CUndoObjectInterface	virtual
validityChanged(const CValidity &changedValidity) override	CDataObject	virtual
validityRemoved(const CValidity &changedValidity)	CDataObject
ValueBool enum value	CDataObject
ValueDbl enum value	CDataObject
ValueInt enum value	CDataObject
ValueInt64 enum value	CDataObject
ValueString enum value	CDataObject
Vector enum value	CDataObject
XMLStatus	CModelEntity	static
~CAnnotation()	CAnnotation	virtual
~CDataContainer()	CDataContainer	virtual
~CDataObject()	CDataObject	virtual
~CMetab()	CMetab
~CModelEntity()	CModelEntity
~CObjectInterface()	CObjectInterface	virtual
~CUndoObjectInterface()	CUndoObjectInterface	virtual