COPASI API  4.16.103
FunctionDB.xml.h
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2 // $Source: /Volumes/Home/Users/shoops/cvs/copasi_dev/copasi/function/FunctionDB.xml.h,v $
3 // $Revision: 1.10 $
4 // $Name: $
5 // $Author: shoops $
6 // $Date: 2012/04/11 12:28:58 $
7 // End CVS Header
8 
9 // Copyright (C) 2012 - 2011 by Pedro Mendes, Virginia Tech Intellectual
10 // Properties, Inc., University of Heidelberg, and The University
11 // of Manchester.
12 // All rights reserved.
13 
14 // Copyright (C) 2001 - 2007 by Pedro Mendes, Virginia Tech Intellectual
15 // Properties, Inc. and EML Research, gGmbH.
16 // All rights reserved.
17 
18 static char FunctionDBxml[] =
19  "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
20  "<!-- generated with COPASI (http://www.copasi.org) -->\n"
21  "<COPASI xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:noNamespaceSchemaLocation=\"http://calvin.bioinformatics.vt.edu/copasi/schema/copasi.xsd\">\n"
22  "<ListOfFunctions>\n"
23  "<Function key=\"Function_0\" name=\"Allosteric inhibition (MWC)\" type=\"PreDefined\" reversible=\"false\">\n"
24  "<Expression>\n"
25  "V*substrate*(Ks+substrate)^(n-1)/(L*(Ks*(1+Inhibitor/Ki))^n+(Ks+substrate)^n)\n"
26  "</Expression>"
27  "<ListOfParameterDescriptions>\n"
28  "<ParameterDescription key=\"FunctionParameter_0\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
29  "<ParameterDescription key=\"FunctionParameter_1\" name=\"Inhibitor\" order=\"1\" role=\"modifier\"/>\n"
30  "<ParameterDescription key=\"FunctionParameter_2\" name=\"V\" order=\"2\" role=\"constant\"/>\n"
31  "<ParameterDescription key=\"FunctionParameter_3\" name=\"Ks\" order=\"3\" role=\"constant\"/>\n"
32  "<ParameterDescription key=\"FunctionParameter_4\" name=\"n\" order=\"4\" role=\"constant\"/>\n"
33  "<ParameterDescription key=\"FunctionParameter_5\" name=\"L\" order=\"5\" role=\"constant\"/>\n"
34  "<ParameterDescription key=\"FunctionParameter_6\" name=\"Ki\" order=\"6\" role=\"constant\"/>\n"
35  "</ListOfParameterDescriptions>\n"
36  "</Function>\n"
37  "<Function key=\"Function_1\" name=\"Allosteric inhibition (empirical)\" type=\"PreDefined\" reversible=\"true\">\n"
38  "<Expression>\n"
39  "(Vf*substrate/Kms-Vr*product/Kmp)/(1+substrate/Kms+product/Kmp+(Inhibitor/Ki)^n)\n"
40  "</Expression>"
41  "<ListOfParameterDescriptions>\n"
42  "<ParameterDescription key=\"FunctionParameter_7\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
43  "<ParameterDescription key=\"FunctionParameter_8\" name=\"product\" order=\"1\" role=\"product\"/>\n"
44  "<ParameterDescription key=\"FunctionParameter_9\" name=\"Inhibitor\" order=\"2\" role=\"modifier\"/>\n"
45  "<ParameterDescription key=\"FunctionParameter_10\" name=\"Vf\" order=\"3\" role=\"constant\"/>\n"
46  "<ParameterDescription key=\"FunctionParameter_11\" name=\"Vr\" order=\"4\" role=\"constant\"/>\n"
47  "<ParameterDescription key=\"FunctionParameter_12\" name=\"Kms\" order=\"5\" role=\"constant\"/>\n"
48  "<ParameterDescription key=\"FunctionParameter_13\" name=\"Kmp\" order=\"6\" role=\"constant\"/>\n"
49  "<ParameterDescription key=\"FunctionParameter_14\" name=\"n\" order=\"7\" role=\"constant\"/>\n"
50  "<ParameterDescription key=\"FunctionParameter_15\" name=\"Ki\" order=\"8\" role=\"constant\"/>\n"
51  "</ListOfParameterDescriptions>\n"
52  "</Function>\n"
53  "<Function key=\"Function_2\" name=\"Catalytic activation (irrev)\" type=\"PreDefined\" reversible=\"false\">\n"
54  "<Expression>\n"
55  "V*substrate*Activator/((Kms+substrate)*(Ka+Activator))\n"
56  "</Expression>"
57  "<ListOfParameterDescriptions>\n"
58  "<ParameterDescription key=\"FunctionParameter_16\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
59  "<ParameterDescription key=\"FunctionParameter_17\" name=\"Activator\" order=\"1\" role=\"modifier\"/>\n"
60  "<ParameterDescription key=\"FunctionParameter_18\" name=\"Kms\" order=\"2\" role=\"constant\"/>\n"
61  "<ParameterDescription key=\"FunctionParameter_19\" name=\"V\" order=\"3\" role=\"constant\"/>\n"
62  "<ParameterDescription key=\"FunctionParameter_20\" name=\"Ka\" order=\"4\" role=\"constant\"/>\n"
63  "</ListOfParameterDescriptions>\n"
64  "</Function>\n"
65  "<Function key=\"Function_3\" name=\"Catalytic activation (rev)\" type=\"PreDefined\" reversible=\"true\">\n"
66  "<Expression>\n"
67  "(Vf*substrate/Kms-Vr*product/Kmp)*Activator/((1+substrate/Kms+product/Kmp)*(Ka+Activator))\n"
68  "</Expression>"
69  "<ListOfParameterDescriptions>\n"
70  "<ParameterDescription key=\"FunctionParameter_21\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
71  "<ParameterDescription key=\"FunctionParameter_22\" name=\"product\" order=\"1\" role=\"product\"/>\n"
72  "<ParameterDescription key=\"FunctionParameter_23\" name=\"Activator\" order=\"2\" role=\"modifier\"/>\n"
73  "<ParameterDescription key=\"FunctionParameter_24\" name=\"Kms\" order=\"3\" role=\"constant\"/>\n"
74  "<ParameterDescription key=\"FunctionParameter_25\" name=\"Kmp\" order=\"4\" role=\"constant\"/>\n"
75  "<ParameterDescription key=\"FunctionParameter_26\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
76  "<ParameterDescription key=\"FunctionParameter_27\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
77  "<ParameterDescription key=\"FunctionParameter_28\" name=\"Ka\" order=\"7\" role=\"constant\"/>\n"
78  "</ListOfParameterDescriptions>\n"
79  "</Function>\n"
80  "<Function key=\"Function_4\" name=\"Competitive inhibition (irr)\" type=\"PreDefined\" reversible=\"false\">\n"
81  "<Expression>\n"
82  "V*substrate/(Km+substrate+Km*Inhibitor/Ki)\n"
83  "</Expression>"
84  "<ListOfParameterDescriptions>\n"
85  "<ParameterDescription key=\"FunctionParameter_29\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
86  "<ParameterDescription key=\"FunctionParameter_30\" name=\"Inhibitor\" order=\"1\" role=\"modifier\"/>\n"
87  "<ParameterDescription key=\"FunctionParameter_31\" name=\"Km\" order=\"2\" role=\"constant\"/>\n"
88  "<ParameterDescription key=\"FunctionParameter_32\" name=\"V\" order=\"3\" role=\"constant\"/>\n"
89  "<ParameterDescription key=\"FunctionParameter_33\" name=\"Ki\" order=\"4\" role=\"constant\"/>\n"
90  "</ListOfParameterDescriptions>\n"
91  "</Function>\n"
92  "<Function key=\"Function_5\" name=\"Competitive inhibition (rev)\" type=\"PreDefined\" reversible=\"true\">\n"
93  "<Expression>\n"
94  "(Vf*substrate/Kms-Vr*product/Kmp)/(1+substrate/Kms+product/Kmp+Inhibitor/Ki)\n"
95  "</Expression>"
96  "<ListOfParameterDescriptions>\n"
97  "<ParameterDescription key=\"FunctionParameter_34\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
98  "<ParameterDescription key=\"FunctionParameter_35\" name=\"product\" order=\"1\" role=\"product\"/>\n"
99  "<ParameterDescription key=\"FunctionParameter_36\" name=\"Inhibitor\" order=\"2\" role=\"modifier\"/>\n"
100  "<ParameterDescription key=\"FunctionParameter_37\" name=\"Kms\" order=\"3\" role=\"constant\"/>\n"
101  "<ParameterDescription key=\"FunctionParameter_38\" name=\"Kmp\" order=\"4\" role=\"constant\"/>\n"
102  "<ParameterDescription key=\"FunctionParameter_39\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
103  "<ParameterDescription key=\"FunctionParameter_40\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
104  "<ParameterDescription key=\"FunctionParameter_41\" name=\"Ki\" order=\"7\" role=\"constant\"/>\n"
105  "</ListOfParameterDescriptions>\n"
106  "</Function>\n"
107  "<Function key=\"Function_6\" name=\"Constant flux (irreversible)\" type=\"PreDefined\" reversible=\"false\">\n"
108  "<Expression>\n"
109  "v\n"
110  "</Expression>"
111  "<ListOfParameterDescriptions>\n"
112  "<ParameterDescription key=\"FunctionParameter_42\" name=\"v\" order=\"0\" role=\"constant\"/>\n"
113  "</ListOfParameterDescriptions>\n"
114  "</Function>\n"
115  "<Function key=\"Function_7\" name=\"Constant flux (reversible)\" type=\"PreDefined\" reversible=\"true\">\n"
116  "<Expression>\n"
117  "v\n"
118  "</Expression>"
119  "<ListOfParameterDescriptions>\n"
120  "<ParameterDescription key=\"FunctionParameter_43\" name=\"v\" order=\"0\" role=\"constant\"/>\n"
121  "</ListOfParameterDescriptions>\n"
122  "</Function>\n"
123  "<Function key=\"Function_8\" name=\"Henri-Michaelis-Menten (irreversible)\" type=\"PreDefined\" reversible=\"false\">\n"
124  "<Expression>\n"
125  "V*substrate/(Km+substrate)\n"
126  "</Expression>"
127  "<ListOfParameterDescriptions>\n"
128  "<ParameterDescription key=\"FunctionParameter_44\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
129  "<ParameterDescription key=\"FunctionParameter_45\" name=\"Km\" order=\"1\" role=\"constant\"/>\n"
130  "<ParameterDescription key=\"FunctionParameter_46\" name=\"V\" order=\"2\" role=\"constant\"/>\n"
131  "</ListOfParameterDescriptions>\n"
132  "</Function>\n"
133  "<Function key=\"Function_9\" name=\"Hill Cooperativity\" type=\"PreDefined\" reversible=\"false\">\n"
134  "<Expression>\n"
135  "V*substrate^h/(Shalve^h+substrate^h)\n"
136  "</Expression>"
137  "<ListOfParameterDescriptions>\n"
138  "<ParameterDescription key=\"FunctionParameter_47\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
139  "<ParameterDescription key=\"FunctionParameter_48\" name=\"Shalve\" order=\"1\" role=\"constant\"/>\n"
140  "<ParameterDescription key=\"FunctionParameter_49\" name=\"V\" order=\"2\" role=\"constant\"/>\n"
141  "<ParameterDescription key=\"FunctionParameter_50\" name=\"h\" order=\"3\" role=\"constant\"/>\n"
142  "</ListOfParameterDescriptions>\n"
143  "</Function>\n"
144  "<Function key=\"Function_10\" name=\"Hyperbolic modifier (irrev)\" type=\"PreDefined\" reversible=\"false\">\n"
145  "<Expression>\n"
146  "V*substrate*(1+b*Modifier/(a*Kd))/(Km*(1+Modifier/Kd)+substrate*(1+Modifier/(a*Kd)))\n"
147  "</Expression>"
148  "<ListOfParameterDescriptions>\n"
149  "<ParameterDescription key=\"FunctionParameter_51\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
150  "<ParameterDescription key=\"FunctionParameter_52\" name=\"Modifier\" order=\"1\" role=\"modifier\"/>\n"
151  "<ParameterDescription key=\"FunctionParameter_53\" name=\"Km\" order=\"2\" role=\"constant\"/>\n"
152  "<ParameterDescription key=\"FunctionParameter_54\" name=\"V\" order=\"3\" role=\"constant\"/>\n"
153  "<ParameterDescription key=\"FunctionParameter_55\" name=\"Kd\" order=\"4\" role=\"constant\"/>\n"
154  "<ParameterDescription key=\"FunctionParameter_56\" name=\"a\" order=\"5\" role=\"constant\"/>\n"
155  "<ParameterDescription key=\"FunctionParameter_57\" name=\"b\" order=\"6\" role=\"constant\"/>\n"
156  "</ListOfParameterDescriptions>\n"
157  "</Function>\n"
158  "<Function key=\"Function_11\" name=\"Hyperbolic modifier (rev)\" type=\"PreDefined\" reversible=\"true\">\n"
159  "<Expression>\n"
160  "(Vf*substrate/Kms-Vr*product/Kmp)*(1+b*Modifier/(a*Kd))/(1+Modifier/Kd+(substrate/Kms+product/Kmp)*(1+Modifier/(a*Kd)))\n"
161  "</Expression>"
162  "<ListOfParameterDescriptions>\n"
163  "<ParameterDescription key=\"FunctionParameter_58\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
164  "<ParameterDescription key=\"FunctionParameter_59\" name=\"product\" order=\"1\" role=\"product\"/>\n"
165  "<ParameterDescription key=\"FunctionParameter_60\" name=\"Modifier\" order=\"2\" role=\"modifier\"/>\n"
166  "<ParameterDescription key=\"FunctionParameter_61\" name=\"Kms\" order=\"3\" role=\"constant\"/>\n"
167  "<ParameterDescription key=\"FunctionParameter_62\" name=\"Kmp\" order=\"4\" role=\"constant\"/>\n"
168  "<ParameterDescription key=\"FunctionParameter_63\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
169  "<ParameterDescription key=\"FunctionParameter_64\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
170  "<ParameterDescription key=\"FunctionParameter_65\" name=\"Kd\" order=\"7\" role=\"constant\"/>\n"
171  "<ParameterDescription key=\"FunctionParameter_66\" name=\"a\" order=\"8\" role=\"constant\"/>\n"
172  "<ParameterDescription key=\"FunctionParameter_67\" name=\"b\" order=\"9\" role=\"constant\"/>\n"
173  "</ListOfParameterDescriptions>\n"
174  "</Function>\n"
175  "<Function key=\"Function_12\" name=\"Iso Uni Uni\" type=\"PreDefined\" reversible=\"true\">\n"
176  "<Expression>\n"
177  "Vf*(substrate-product/Keq)/(substrate*(1+product/Kii)+Kms*(1+product/Kmp))\n"
178  "</Expression>"
179  "<ListOfParameterDescriptions>\n"
180  "<ParameterDescription key=\"FunctionParameter_68\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
181  "<ParameterDescription key=\"FunctionParameter_69\" name=\"product\" order=\"1\" role=\"product\"/>\n"
182  "<ParameterDescription key=\"FunctionParameter_70\" name=\"Kms\" order=\"2\" role=\"constant\"/>\n"
183  "<ParameterDescription key=\"FunctionParameter_71\" name=\"Kmp\" order=\"3\" role=\"constant\"/>\n"
184  "<ParameterDescription key=\"FunctionParameter_72\" name=\"Kii\" order=\"4\" role=\"constant\"/>\n"
185  "<ParameterDescription key=\"FunctionParameter_73\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
186  "<ParameterDescription key=\"FunctionParameter_74\" name=\"Keq\" order=\"6\" role=\"constant\"/>\n"
187  "</ListOfParameterDescriptions>\n"
188  "</Function>\n"
189  "<Function key=\"Function_13\" name=\"Mass action (irreversible)\" type=\"MassAction\" reversible=\"false\">\n"
190  " <MiriamAnnotation>\n"
191  " <rdf:RDF xmlns:CopasiMT=\"http://www.copasi.org/RDF/MiriamTerms#\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\">\n"
192  " <rdf:Description rdf:about=\"#Function_13\">\n"
193  " <CopasiMT:is rdf:resource=\"urn:miriam:obo.sbo:SBO:0000041\"/>\n"
194  " </rdf:Description>\n"
195  " </rdf:RDF>\n"
196  " </MiriamAnnotation>\n"
197  " <Comment>\n"
198  "<body xmlns=\"http://www.w3.org/1999/xhtml\">\n"
199  "<b>Mass action rate law for first order irreversible reactions</b>\n"
200  "<p>\n"
201  "Reaction scheme where the products are created from the reactants and the change of a product quantity is proportional to the product of reactant activities. The reaction scheme does not include any reverse process that creates the reactants from the products. The change of a product quantity is proportional to the quantity of one reactant.\n"
202  "</p>\n"
203  "</body>\n"
204  " </Comment>\n"
205  "<Expression>\n"
206  "k1*PRODUCT&lt;substrate_i&gt;\n"
207  "</Expression>"
208  "<ListOfParameterDescriptions>\n"
209  "<ParameterDescription key=\"FunctionParameter_75\" name=\"k1\" order=\"0\" role=\"constant\"/>\n"
210  "<ParameterDescription key=\"FunctionParameter_76\" name=\"substrate\" order=\"1\" role=\"substrate\" minOccurs=\"1\" maxOccurs=\"unbounded\"/>\n"
211  "</ListOfParameterDescriptions>\n"
212  "</Function>\n"
213  "<Function key=\"Function_14\" name=\"Mass action (reversible)\" type=\"MassAction\" reversible=\"true\">\n"
214  " <MiriamAnnotation>\n"
215  " <rdf:RDF xmlns:CopasiMT=\"http://www.copasi.org/RDF/MiriamTerms#\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\">\n"
216  " <rdf:Description rdf:about=\"#Function_14\">\n"
217  " <CopasiMT:is rdf:resource=\"urn:miriam:obo.sbo:SBO:0000042\"/>\n"
218  " </rdf:Description>\n"
219  " </rdf:RDF>\n"
220  " </MiriamAnnotation>\n"
221  " <Comment>\n"
222  "<body xmlns=\"http://www.w3.org/1999/xhtml\">\n"
223  "<b>Mass action rate law for reversible reactions</b>\n"
224  "<p>\n"
225  "Reaction scheme where the products are created from the reactants and the change of a product quantity is proportional to the product of reactant activities. The reaction scheme does include a reverse process that creates the reactants from the products.\n"
226  "</p>\n"
227  "</body>\n"
228  " </Comment>\n"
229  "<Expression>\n"
230  "k1*PRODUCT&lt;substrate_i&gt;-k2*PRODUCT&lt;product_j&gt;\n"
231  "</Expression>"
232  "<ListOfParameterDescriptions>\n"
233  "<ParameterDescription key=\"FunctionParameter_77\" name=\"k1\" order=\"0\" role=\"constant\"/>\n"
234  "<ParameterDescription key=\"FunctionParameter_78\" name=\"substrate\" order=\"1\" role=\"substrate\" minOccurs=\"1\" maxOccurs=\"unbounded\"/>\n"
235  "<ParameterDescription key=\"FunctionParameter_79\" name=\"k2\" order=\"2\" role=\"constant\"/>\n"
236  "<ParameterDescription key=\"FunctionParameter_80\" name=\"product\" order=\"3\" role=\"product\" minOccurs=\"1\" maxOccurs=\"unbounded\"/>\n"
237  "</ListOfParameterDescriptions>\n"
238  "</Function>\n"
239  "<Function key=\"Function_15\" name=\"Mixed activation (irrev)\" type=\"PreDefined\" reversible=\"false\">\n"
240  "<Expression>\n"
241  "V*substrate*Activator/(Kms*(Kas+Activator)+substrate*(Kac+Activator))\n"
242  "</Expression>"
243  "<ListOfParameterDescriptions>\n"
244  "<ParameterDescription key=\"FunctionParameter_81\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
245  "<ParameterDescription key=\"FunctionParameter_82\" name=\"Activator\" order=\"1\" role=\"modifier\"/>\n"
246  "<ParameterDescription key=\"FunctionParameter_83\" name=\"Kms\" order=\"2\" role=\"constant\"/>\n"
247  "<ParameterDescription key=\"FunctionParameter_84\" name=\"V\" order=\"3\" role=\"constant\"/>\n"
248  "<ParameterDescription key=\"FunctionParameter_85\" name=\"Kas\" order=\"4\" role=\"constant\"/>\n"
249  "<ParameterDescription key=\"FunctionParameter_86\" name=\"Kac\" order=\"5\" role=\"constant\"/>\n"
250  "</ListOfParameterDescriptions>\n"
251  "</Function>\n"
252  "<Function key=\"Function_16\" name=\"Mixed activation (rev)\" type=\"PreDefined\" reversible=\"true\">\n"
253  "<Expression>\n"
254  "(Vf*substrate/Kms-Vr*product/Kmp)*Activator/(Kas+Activator+(substrate/Kms+product/Kmp)*(Kac+Activator))\n"
255  "</Expression>"
256  "<ListOfParameterDescriptions>\n"
257  "<ParameterDescription key=\"FunctionParameter_87\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
258  "<ParameterDescription key=\"FunctionParameter_88\" name=\"product\" order=\"1\" role=\"product\"/>\n"
259  "<ParameterDescription key=\"FunctionParameter_89\" name=\"Activator\" order=\"2\" role=\"modifier\"/>\n"
260  "<ParameterDescription key=\"FunctionParameter_90\" name=\"Kms\" order=\"3\" role=\"constant\"/>\n"
261  "<ParameterDescription key=\"FunctionParameter_91\" name=\"Kmp\" order=\"4\" role=\"constant\"/>\n"
262  "<ParameterDescription key=\"FunctionParameter_92\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
263  "<ParameterDescription key=\"FunctionParameter_93\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
264  "<ParameterDescription key=\"FunctionParameter_94\" name=\"Kas\" order=\"7\" role=\"constant\"/>\n"
265  "<ParameterDescription key=\"FunctionParameter_95\" name=\"Kac\" order=\"8\" role=\"constant\"/>\n"
266  "</ListOfParameterDescriptions>\n"
267  "</Function>\n"
268  "<Function key=\"Function_17\" name=\"Mixed inhibition (irr)\" type=\"PreDefined\" reversible=\"false\">\n"
269  "<Expression>\n"
270  "V*substrate/(Km*(1+Inhibitor/Kis)+substrate*(1+Inhibitor/Kic))\n"
271  "</Expression>"
272  "<ListOfParameterDescriptions>\n"
273  "<ParameterDescription key=\"FunctionParameter_96\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
274  "<ParameterDescription key=\"FunctionParameter_97\" name=\"Inhibitor\" order=\"1\" role=\"modifier\"/>\n"
275  "<ParameterDescription key=\"FunctionParameter_98\" name=\"Km\" order=\"2\" role=\"constant\"/>\n"
276  "<ParameterDescription key=\"FunctionParameter_99\" name=\"V\" order=\"3\" role=\"constant\"/>\n"
277  "<ParameterDescription key=\"FunctionParameter_100\" name=\"Kis\" order=\"4\" role=\"constant\"/>\n"
278  "<ParameterDescription key=\"FunctionParameter_101\" name=\"Kic\" order=\"5\" role=\"constant\"/>\n"
279  "</ListOfParameterDescriptions>\n"
280  "</Function>\n"
281  "<Function key=\"Function_18\" name=\"Mixed inhibition (rev)\" type=\"PreDefined\" reversible=\"true\">\n"
282  "<Expression>\n"
283  "(Vf*substrate/Kms-Vr*product/Kmp)/(1+Inhibitor/Kis+(substrate/Kms+product/Kmp)*(1+Inhibitor/Kic))\n"
284  "</Expression>"
285  "<ListOfParameterDescriptions>\n"
286  "<ParameterDescription key=\"FunctionParameter_102\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
287  "<ParameterDescription key=\"FunctionParameter_103\" name=\"product\" order=\"1\" role=\"product\"/>\n"
288  "<ParameterDescription key=\"FunctionParameter_104\" name=\"Inhibitor\" order=\"2\" role=\"modifier\"/>\n"
289  "<ParameterDescription key=\"FunctionParameter_105\" name=\"Kms\" order=\"3\" role=\"constant\"/>\n"
290  "<ParameterDescription key=\"FunctionParameter_106\" name=\"Kmp\" order=\"4\" role=\"constant\"/>\n"
291  "<ParameterDescription key=\"FunctionParameter_107\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
292  "<ParameterDescription key=\"FunctionParameter_108\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
293  "<ParameterDescription key=\"FunctionParameter_109\" name=\"Kis\" order=\"7\" role=\"constant\"/>\n"
294  "<ParameterDescription key=\"FunctionParameter_110\" name=\"Kic\" order=\"8\" role=\"constant\"/>\n"
295  "</ListOfParameterDescriptions>\n"
296  "</Function>\n"
297  "<Function key=\"Function_19\" name=\"Noncompetitive inhibition (irr)\" type=\"PreDefined\" reversible=\"false\">\n"
298  "<Expression>\n"
299  "V*substrate/((Km+substrate)*(1+Inhibitor/Ki))\n"
300  "</Expression>"
301  "<ListOfParameterDescriptions>\n"
302  "<ParameterDescription key=\"FunctionParameter_111\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
303  "<ParameterDescription key=\"FunctionParameter_112\" name=\"Inhibitor\" order=\"1\" role=\"modifier\"/>\n"
304  "<ParameterDescription key=\"FunctionParameter_113\" name=\"Km\" order=\"2\" role=\"constant\"/>\n"
305  "<ParameterDescription key=\"FunctionParameter_114\" name=\"V\" order=\"3\" role=\"constant\"/>\n"
306  "<ParameterDescription key=\"FunctionParameter_115\" name=\"Ki\" order=\"4\" role=\"constant\"/>\n"
307  "</ListOfParameterDescriptions>\n"
308  "</Function>\n"
309  "<Function key=\"Function_20\" name=\"Noncompetitive inhibition (rev)\" type=\"PreDefined\" reversible=\"true\">\n"
310  "<Expression>\n"
311  "(Vf*substrate/Kms-Vr*product/Kmp)/((1+substrate/Kms+product/Kmp)*(1+Inhibitor/Ki))\n"
312  "</Expression>"
313  "<ListOfParameterDescriptions>\n"
314  "<ParameterDescription key=\"FunctionParameter_116\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
315  "<ParameterDescription key=\"FunctionParameter_117\" name=\"product\" order=\"1\" role=\"product\"/>\n"
316  "<ParameterDescription key=\"FunctionParameter_118\" name=\"Inhibitor\" order=\"2\" role=\"modifier\"/>\n"
317  "<ParameterDescription key=\"FunctionParameter_119\" name=\"Kms\" order=\"3\" role=\"constant\"/>\n"
318  "<ParameterDescription key=\"FunctionParameter_120\" name=\"Kmp\" order=\"4\" role=\"constant\"/>\n"
319  "<ParameterDescription key=\"FunctionParameter_121\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
320  "<ParameterDescription key=\"FunctionParameter_122\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
321  "<ParameterDescription key=\"FunctionParameter_123\" name=\"Ki\" order=\"7\" role=\"constant\"/>\n"
322  "</ListOfParameterDescriptions>\n"
323  "</Function>\n"
324  "<Function key=\"Function_21\" name=\"Ordered Bi Bi\" type=\"PreDefined\" reversible=\"true\">\n"
325  "<Expression>\n"
326  "Vf*(substratea*substrateb-productp*productq/Keq)/(substratea*substrateb*(1+productp/Kip)+Kma*substrateb+Kmb*(substratea+Kia)+Vf/(Vr*Keq)*(Kmq*productp*(1+substratea/Kia)+productq*(Kmp*(1+Kma*substrateb/(Kia*Kmb))+productp*(1+substrateb/Kib))))\n"
327  "</Expression>"
328  "<ListOfParameterDescriptions>\n"
329  "<ParameterDescription key=\"FunctionParameter_124\" name=\"substratea\" order=\"0\" role=\"substrate\"/>\n"
330  "<ParameterDescription key=\"FunctionParameter_125\" name=\"substrateb\" order=\"1\" role=\"substrate\"/>\n"
331  "<ParameterDescription key=\"FunctionParameter_126\" name=\"productp\" order=\"2\" role=\"product\"/>\n"
332  "<ParameterDescription key=\"FunctionParameter_127\" name=\"productq\" order=\"3\" role=\"product\"/>\n"
333  "<ParameterDescription key=\"FunctionParameter_128\" name=\"Keq\" order=\"4\" role=\"constant\"/>\n"
334  "<ParameterDescription key=\"FunctionParameter_129\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
335  "<ParameterDescription key=\"FunctionParameter_130\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
336  "<ParameterDescription key=\"FunctionParameter_131\" name=\"Kma\" order=\"7\" role=\"constant\"/>\n"
337  "<ParameterDescription key=\"FunctionParameter_132\" name=\"Kmb\" order=\"8\" role=\"constant\"/>\n"
338  "<ParameterDescription key=\"FunctionParameter_133\" name=\"Kmp\" order=\"9\" role=\"constant\"/>\n"
339  "<ParameterDescription key=\"FunctionParameter_134\" name=\"Kmq\" order=\"10\" role=\"constant\"/>\n"
340  "<ParameterDescription key=\"FunctionParameter_135\" name=\"Kia\" order=\"11\" role=\"constant\"/>\n"
341  "<ParameterDescription key=\"FunctionParameter_136\" name=\"Kib\" order=\"12\" role=\"constant\"/>\n"
342  "<ParameterDescription key=\"FunctionParameter_137\" name=\"Kip\" order=\"13\" role=\"constant\"/>\n"
343  "</ListOfParameterDescriptions>\n"
344  "</Function>\n"
345  "<Function key=\"Function_22\" name=\"Ordered Bi Uni\" type=\"PreDefined\" reversible=\"true\">\n"
346  "<Expression>\n"
347  "Vf*(substratea*substrateb-product/Keq)/(substratea*substrateb+Kma*substrateb+Kmb*substratea+Vf/(Vr*Keq)*(Kmp+product*(1+substratea/Kia)))\n"
348  "</Expression>"
349  "<ListOfParameterDescriptions>\n"
350  "<ParameterDescription key=\"FunctionParameter_138\" name=\"substratea\" order=\"0\" role=\"substrate\"/>\n"
351  "<ParameterDescription key=\"FunctionParameter_139\" name=\"substrateb\" order=\"1\" role=\"substrate\"/>\n"
352  "<ParameterDescription key=\"FunctionParameter_140\" name=\"product\" order=\"2\" role=\"product\"/>\n"
353  "<ParameterDescription key=\"FunctionParameter_141\" name=\"Kma\" order=\"3\" role=\"constant\"/>\n"
354  "<ParameterDescription key=\"FunctionParameter_142\" name=\"Kmb\" order=\"4\" role=\"constant\"/>\n"
355  "<ParameterDescription key=\"FunctionParameter_143\" name=\"Kmp\" order=\"5\" role=\"constant\"/>\n"
356  "<ParameterDescription key=\"FunctionParameter_144\" name=\"Kia\" order=\"6\" role=\"constant\"/>\n"
357  "<ParameterDescription key=\"FunctionParameter_145\" name=\"Keq\" order=\"7\" role=\"constant\"/>\n"
358  "<ParameterDescription key=\"FunctionParameter_146\" name=\"Vf\" order=\"8\" role=\"constant\"/>\n"
359  "<ParameterDescription key=\"FunctionParameter_147\" name=\"Vr\" order=\"9\" role=\"constant\"/>\n"
360  "</ListOfParameterDescriptions>\n"
361  "</Function>\n"
362  "<Function key=\"Function_23\" name=\"Ordered Uni Bi\" type=\"PreDefined\" reversible=\"true\">\n"
363  "<Expression>\n"
364  "Vf*(substrate-productp*productq/Keq)/(Kms+substrate*(1+productp/Kip)+Vf/(Vr*Keq)*(Kmq*productp+Kmp*productq+productp*productq))\n"
365  "</Expression>"
366  "<ListOfParameterDescriptions>\n"
367  "<ParameterDescription key=\"FunctionParameter_148\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
368  "<ParameterDescription key=\"FunctionParameter_149\" name=\"productp\" order=\"1\" role=\"product\"/>\n"
369  "<ParameterDescription key=\"FunctionParameter_150\" name=\"productq\" order=\"2\" role=\"product\"/>\n"
370  "<ParameterDescription key=\"FunctionParameter_151\" name=\"Kms\" order=\"3\" role=\"constant\"/>\n"
371  "<ParameterDescription key=\"FunctionParameter_152\" name=\"Kmq\" order=\"4\" role=\"constant\"/>\n"
372  "<ParameterDescription key=\"FunctionParameter_153\" name=\"Kmp\" order=\"5\" role=\"constant\"/>\n"
373  "<ParameterDescription key=\"FunctionParameter_154\" name=\"Kip\" order=\"6\" role=\"constant\"/>\n"
374  "<ParameterDescription key=\"FunctionParameter_155\" name=\"Keq\" order=\"7\" role=\"constant\"/>\n"
375  "<ParameterDescription key=\"FunctionParameter_156\" name=\"Vf\" order=\"8\" role=\"constant\"/>\n"
376  "<ParameterDescription key=\"FunctionParameter_157\" name=\"Vr\" order=\"9\" role=\"constant\"/>\n"
377  "</ListOfParameterDescriptions>\n"
378  "</Function>\n"
379  "<Function key=\"Function_24\" name=\"Ping Pong Bi Bi\" type=\"PreDefined\" reversible=\"true\">\n"
380  "<Expression>\n"
381  "Vf*(substratea*substrateb-productp*productq/Keq)/(substratea*substrateb+Kmb*substratea+Kma*substrateb*(1+productq/Kiq)+Vf/(Vr*Keq)*(Kmq*productp*(1+substratea/Kia)+productq*(Kmp+productp)))\n"
382  "</Expression>"
383  "<ListOfParameterDescriptions>\n"
384  "<ParameterDescription key=\"FunctionParameter_158\" name=\"substratea\" order=\"0\" role=\"substrate\"/>\n"
385  "<ParameterDescription key=\"FunctionParameter_159\" name=\"substrateb\" order=\"1\" role=\"substrate\"/>\n"
386  "<ParameterDescription key=\"FunctionParameter_160\" name=\"productp\" order=\"2\" role=\"product\"/>\n"
387  "<ParameterDescription key=\"FunctionParameter_161\" name=\"productq\" order=\"3\" role=\"product\"/>\n"
388  "<ParameterDescription key=\"FunctionParameter_162\" name=\"Keq\" order=\"4\" role=\"constant\"/>\n"
389  "<ParameterDescription key=\"FunctionParameter_163\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
390  "<ParameterDescription key=\"FunctionParameter_164\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
391  "<ParameterDescription key=\"FunctionParameter_165\" name=\"Kma\" order=\"7\" role=\"constant\"/>\n"
392  "<ParameterDescription key=\"FunctionParameter_166\" name=\"Kmb\" order=\"8\" role=\"constant\"/>\n"
393  "<ParameterDescription key=\"FunctionParameter_167\" name=\"Kmp\" order=\"9\" role=\"constant\"/>\n"
394  "<ParameterDescription key=\"FunctionParameter_168\" name=\"Kmq\" order=\"10\" role=\"constant\"/>\n"
395  "<ParameterDescription key=\"FunctionParameter_169\" name=\"Kia\" order=\"11\" role=\"constant\"/>\n"
396  "<ParameterDescription key=\"FunctionParameter_170\" name=\"Kiq\" order=\"12\" role=\"constant\"/>\n"
397  "</ListOfParameterDescriptions>\n"
398  "</Function>\n"
399  "<Function key=\"Function_25\" name=\"Reversible Hill 1 modifier\" type=\"PreDefined\" reversible=\"true\">\n"
400  "<Expression>\n"
401  "Vf*substrate/Shalve*(1-product/(substrate*Keq))*(substrate/Shalve+product/Phalve)^(h-1)/((1+(Modifier/Mhalve)^h)/(1+alpha*(Modifier/Mhalve)^h)+(substrate/Shalve+product/Phalve)^h)\n"
402  "</Expression>"
403  "<ListOfParameterDescriptions>\n"
404  "<ParameterDescription key=\"FunctionParameter_171\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
405  "<ParameterDescription key=\"FunctionParameter_172\" name=\"product\" order=\"1\" role=\"product\"/>\n"
406  "<ParameterDescription key=\"FunctionParameter_173\" name=\"Modifier\" order=\"2\" role=\"modifier\"/>\n"
407  "<ParameterDescription key=\"FunctionParameter_174\" name=\"Keq\" order=\"3\" role=\"constant\"/>\n"
408  "<ParameterDescription key=\"FunctionParameter_175\" name=\"Vf\" order=\"4\" role=\"constant\"/>\n"
409  "<ParameterDescription key=\"FunctionParameter_176\" name=\"Shalve\" order=\"5\" role=\"constant\"/>\n"
410  "<ParameterDescription key=\"FunctionParameter_177\" name=\"Phalve\" order=\"6\" role=\"constant\"/>\n"
411  "<ParameterDescription key=\"FunctionParameter_178\" name=\"h\" order=\"7\" role=\"constant\"/>\n"
412  "<ParameterDescription key=\"FunctionParameter_179\" name=\"Mhalve\" order=\"8\" role=\"constant\"/>\n"
413  "<ParameterDescription key=\"FunctionParameter_180\" name=\"alpha\" order=\"9\" role=\"constant\"/>\n"
414  "</ListOfParameterDescriptions>\n"
415  "</Function>\n"
416  "<Function key=\"Function_26\" name=\"Reversible Hill 2 modifiers\" type=\"PreDefined\" reversible=\"true\">\n"
417  "<Expression>\n"
418  "Vf*substrate/Shalve*(1-product/(substrate*Keq))*(substrate/Shalve+product/Phalve)^(h-1)/((1+(ModifierA/MAhalve)^h+(ModifierB/MBhalve)^h)/(1+alphaA*(ModifierA/MAhalve)^h+alphaB*(ModifierB/MBhalve)^h+alphaA*alphaB*alphaAB*(ModifierA/MAhalve)^h*(ModifierB/MBhalve)^h)+(substrate/Shalve+product/Phalve)^h)\n"
419  "</Expression>"
420  "<ListOfParameterDescriptions>\n"
421  "<ParameterDescription key=\"FunctionParameter_181\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
422  "<ParameterDescription key=\"FunctionParameter_182\" name=\"product\" order=\"1\" role=\"product\"/>\n"
423  "<ParameterDescription key=\"FunctionParameter_183\" name=\"ModifierA\" order=\"2\" role=\"modifier\"/>\n"
424  "<ParameterDescription key=\"FunctionParameter_184\" name=\"ModifierB\" order=\"3\" role=\"modifier\"/>\n"
425  "<ParameterDescription key=\"FunctionParameter_185\" name=\"Keq\" order=\"4\" role=\"constant\"/>\n"
426  "<ParameterDescription key=\"FunctionParameter_186\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
427  "<ParameterDescription key=\"FunctionParameter_187\" name=\"Shalve\" order=\"6\" role=\"constant\"/>\n"
428  "<ParameterDescription key=\"FunctionParameter_188\" name=\"Phalve\" order=\"7\" role=\"constant\"/>\n"
429  "<ParameterDescription key=\"FunctionParameter_189\" name=\"h\" order=\"8\" role=\"constant\"/>\n"
430  "<ParameterDescription key=\"FunctionParameter_190\" name=\"MAhalve\" order=\"9\" role=\"constant\"/>\n"
431  "<ParameterDescription key=\"FunctionParameter_191\" name=\"alphaA\" order=\"10\" role=\"constant\"/>\n"
432  "<ParameterDescription key=\"FunctionParameter_192\" name=\"MBhalve\" order=\"11\" role=\"constant\"/>\n"
433  "<ParameterDescription key=\"FunctionParameter_193\" name=\"alphaB\" order=\"12\" role=\"constant\"/>\n"
434  "<ParameterDescription key=\"FunctionParameter_194\" name=\"alphaAB\" order=\"13\" role=\"constant\"/>\n"
435  "</ListOfParameterDescriptions>\n"
436  "</Function>\n"
437  "<Function key=\"Function_27\" name=\"Reversible Hill\" type=\"PreDefined\" reversible=\"true\">\n"
438  "<Expression>\n"
439  "Vf*substrate/Shalve*(1-product/(substrate*Keq))*(substrate/Shalve+product/Phalve)^(h-1)/(1+(substrate/Shalve+product/Phalve)^h)\n"
440  "</Expression>"
441  "<ListOfParameterDescriptions>\n"
442  "<ParameterDescription key=\"FunctionParameter_195\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
443  "<ParameterDescription key=\"FunctionParameter_196\" name=\"product\" order=\"1\" role=\"product\"/>\n"
444  "<ParameterDescription key=\"FunctionParameter_197\" name=\"Keq\" order=\"2\" role=\"constant\"/>\n"
445  "<ParameterDescription key=\"FunctionParameter_198\" name=\"Vf\" order=\"3\" role=\"constant\"/>\n"
446  "<ParameterDescription key=\"FunctionParameter_199\" name=\"Shalve\" order=\"4\" role=\"constant\"/>\n"
447  "<ParameterDescription key=\"FunctionParameter_200\" name=\"Phalve\" order=\"5\" role=\"constant\"/>\n"
448  "<ParameterDescription key=\"FunctionParameter_201\" name=\"h\" order=\"6\" role=\"constant\"/>\n"
449  "</ListOfParameterDescriptions>\n"
450  "</Function>\n"
451  "<Function key=\"Function_28\" name=\"Reversible Michaelis-Menten\" type=\"PreDefined\" reversible=\"true\">\n"
452  "<Expression>\n"
453  "(Vf*substrate/Kms-Vr*product/Kmp)/(1+substrate/Kms+product/Kmp)\n"
454  "</Expression>"
455  "<ListOfParameterDescriptions>\n"
456  "<ParameterDescription key=\"FunctionParameter_202\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
457  "<ParameterDescription key=\"FunctionParameter_203\" name=\"product\" order=\"1\" role=\"product\"/>\n"
458  "<ParameterDescription key=\"FunctionParameter_204\" name=\"Kms\" order=\"2\" role=\"constant\"/>\n"
459  "<ParameterDescription key=\"FunctionParameter_205\" name=\"Kmp\" order=\"3\" role=\"constant\"/>\n"
460  "<ParameterDescription key=\"FunctionParameter_206\" name=\"Vf\" order=\"4\" role=\"constant\"/>\n"
461  "<ParameterDescription key=\"FunctionParameter_207\" name=\"Vr\" order=\"5\" role=\"constant\"/>\n"
462  "</ListOfParameterDescriptions>\n"
463  "</Function>\n"
464  "<Function key=\"Function_29\" name=\"Specific activation (irrev)\" type=\"PreDefined\" reversible=\"false\">\n"
465  "<Expression>\n"
466  "V*substrate*Activator/(Kms*Ka+(Kms+substrate)*Activator)\n"
467  "</Expression>"
468  "<ListOfParameterDescriptions>\n"
469  "<ParameterDescription key=\"FunctionParameter_208\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
470  "<ParameterDescription key=\"FunctionParameter_209\" name=\"Activator\" order=\"1\" role=\"modifier\"/>\n"
471  "<ParameterDescription key=\"FunctionParameter_210\" name=\"Kms\" order=\"2\" role=\"constant\"/>\n"
472  "<ParameterDescription key=\"FunctionParameter_211\" name=\"V\" order=\"3\" role=\"constant\"/>\n"
473  "<ParameterDescription key=\"FunctionParameter_212\" name=\"Ka\" order=\"4\" role=\"constant\"/>\n"
474  "</ListOfParameterDescriptions>\n"
475  "</Function>\n"
476  "<Function key=\"Function_30\" name=\"Specific activation (rev)\" type=\"PreDefined\" reversible=\"true\">\n"
477  "<Expression>\n"
478  "(Vf*substrate/Kms-Vr*product/Kmp)*Activator/(Ka+(1+substrate/Kms+product/Kmp)*Activator)\n"
479  "</Expression>"
480  "<ListOfParameterDescriptions>\n"
481  "<ParameterDescription key=\"FunctionParameter_213\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
482  "<ParameterDescription key=\"FunctionParameter_214\" name=\"product\" order=\"1\" role=\"product\"/>\n"
483  "<ParameterDescription key=\"FunctionParameter_215\" name=\"Activator\" order=\"2\" role=\"modifier\"/>\n"
484  "<ParameterDescription key=\"FunctionParameter_216\" name=\"Kms\" order=\"3\" role=\"constant\"/>\n"
485  "<ParameterDescription key=\"FunctionParameter_217\" name=\"Kmp\" order=\"4\" role=\"constant\"/>\n"
486  "<ParameterDescription key=\"FunctionParameter_218\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
487  "<ParameterDescription key=\"FunctionParameter_219\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
488  "<ParameterDescription key=\"FunctionParameter_220\" name=\"Ka\" order=\"7\" role=\"constant\"/>\n"
489  "</ListOfParameterDescriptions>\n"
490  "</Function>\n"
491  "<Function key=\"Function_31\" name=\"Substrate activation (irr)\" type=\"PreDefined\" reversible=\"false\">\n"
492  "<Expression>\n"
493  "V*(substrate/Ksa)^2/(1+substrate/Ksc+substrate/Ksa+(substrate/Ksa)^2)\n"
494  "</Expression>"
495  "<ListOfParameterDescriptions>\n"
496  "<ParameterDescription key=\"FunctionParameter_221\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
497  "<ParameterDescription key=\"FunctionParameter_222\" name=\"V\" order=\"1\" role=\"constant\"/>\n"
498  "<ParameterDescription key=\"FunctionParameter_223\" name=\"Ksc\" order=\"2\" role=\"constant\"/>\n"
499  "<ParameterDescription key=\"FunctionParameter_224\" name=\"Ksa\" order=\"3\" role=\"constant\"/>\n"
500  "</ListOfParameterDescriptions>\n"
501  "</Function>\n"
502  "<Function key=\"Function_32\" name=\"Substrate inhibition (irr)\" type=\"PreDefined\" reversible=\"false\">\n"
503  "<Expression>\n"
504  "V*substrate/(Km+substrate+Km*(substrate/Ki)^2)\n"
505  "</Expression>"
506  "<ListOfParameterDescriptions>\n"
507  "<ParameterDescription key=\"FunctionParameter_225\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
508  "<ParameterDescription key=\"FunctionParameter_226\" name=\"Km\" order=\"1\" role=\"constant\"/>\n"
509  "<ParameterDescription key=\"FunctionParameter_227\" name=\"V\" order=\"2\" role=\"constant\"/>\n"
510  "<ParameterDescription key=\"FunctionParameter_228\" name=\"Ki\" order=\"3\" role=\"constant\"/>\n"
511  "</ListOfParameterDescriptions>\n"
512  "</Function>\n"
513  "<Function key=\"Function_33\" name=\"Substrate inhibition (rev)\" type=\"PreDefined\" reversible=\"true\">\n"
514  "<Expression>\n"
515  "(Vf*substrate/Kms-Vr*product/Kmp)/(1+substrate/Kms+product/Kmp+(substrate/Ki)^2)\n"
516  "</Expression>"
517  "<ListOfParameterDescriptions>\n"
518  "<ParameterDescription key=\"FunctionParameter_229\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
519  "<ParameterDescription key=\"FunctionParameter_230\" name=\"product\" order=\"1\" role=\"product\"/>\n"
520  "<ParameterDescription key=\"FunctionParameter_231\" name=\"Kms\" order=\"2\" role=\"constant\"/>\n"
521  "<ParameterDescription key=\"FunctionParameter_232\" name=\"Kmp\" order=\"3\" role=\"constant\"/>\n"
522  "<ParameterDescription key=\"FunctionParameter_233\" name=\"Vf\" order=\"4\" role=\"constant\"/>\n"
523  "<ParameterDescription key=\"FunctionParameter_234\" name=\"Vr\" order=\"5\" role=\"constant\"/>\n"
524  "<ParameterDescription key=\"FunctionParameter_235\" name=\"Ki\" order=\"6\" role=\"constant\"/>\n"
525  "</ListOfParameterDescriptions>\n"
526  "</Function>\n"
527  "<Function key=\"Function_34\" name=\"Uncompetitive inhibition (irr)\" type=\"PreDefined\" reversible=\"false\">\n"
528  "<Expression>\n"
529  "V*substrate/(Km+substrate*(1+Inhibitor/Ki))\n"
530  "</Expression>"
531  "<ListOfParameterDescriptions>\n"
532  "<ParameterDescription key=\"FunctionParameter_236\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
533  "<ParameterDescription key=\"FunctionParameter_237\" name=\"Inhibitor\" order=\"1\" role=\"modifier\"/>\n"
534  "<ParameterDescription key=\"FunctionParameter_238\" name=\"Km\" order=\"2\" role=\"constant\"/>\n"
535  "<ParameterDescription key=\"FunctionParameter_239\" name=\"V\" order=\"3\" role=\"constant\"/>\n"
536  "<ParameterDescription key=\"FunctionParameter_240\" name=\"Ki\" order=\"4\" role=\"constant\"/>\n"
537  "</ListOfParameterDescriptions>\n"
538  "</Function>\n"
539  "<Function key=\"Function_35\" name=\"Uncompetitive inhibition (rev)\" type=\"PreDefined\" reversible=\"true\">\n"
540  "<Expression>\n"
541  "(Vf*substrate/Kms-Vr*product/Kmp)/(1+(substrate/Kms+product/Kmp)*(1+Inhibitor/Ki))\n"
542  "</Expression>"
543  "<ListOfParameterDescriptions>\n"
544  "<ParameterDescription key=\"FunctionParameter_241\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
545  "<ParameterDescription key=\"FunctionParameter_242\" name=\"product\" order=\"1\" role=\"product\"/>\n"
546  "<ParameterDescription key=\"FunctionParameter_243\" name=\"Inhibitor\" order=\"2\" role=\"modifier\"/>\n"
547  "<ParameterDescription key=\"FunctionParameter_244\" name=\"Kms\" order=\"3\" role=\"constant\"/>\n"
548  "<ParameterDescription key=\"FunctionParameter_245\" name=\"Kmp\" order=\"4\" role=\"constant\"/>\n"
549  "<ParameterDescription key=\"FunctionParameter_246\" name=\"Vf\" order=\"5\" role=\"constant\"/>\n"
550  "<ParameterDescription key=\"FunctionParameter_247\" name=\"Vr\" order=\"6\" role=\"constant\"/>\n"
551  "<ParameterDescription key=\"FunctionParameter_248\" name=\"Ki\" order=\"7\" role=\"constant\"/>\n"
552  "</ListOfParameterDescriptions>\n"
553  "</Function>\n"
554  "<Function key=\"Function_36\" name=\"Uni Uni\" type=\"PreDefined\" reversible=\"true\">\n"
555  "<Expression>\n"
556  "Vf*(substrate-product/Keq)/(substrate+Kms*(1+product/Kmp))\n"
557  "</Expression>"
558  "<ListOfParameterDescriptions>\n"
559  "<ParameterDescription key=\"FunctionParameter_249\" name=\"substrate\" order=\"0\" role=\"substrate\"/>\n"
560  "<ParameterDescription key=\"FunctionParameter_250\" name=\"product\" order=\"1\" role=\"product\"/>\n"
561  "<ParameterDescription key=\"FunctionParameter_251\" name=\"Kms\" order=\"2\" role=\"constant\"/>\n"
562  "<ParameterDescription key=\"FunctionParameter_252\" name=\"Kmp\" order=\"3\" role=\"constant\"/>\n"
563  "<ParameterDescription key=\"FunctionParameter_253\" name=\"Vf\" order=\"4\" role=\"constant\"/>\n"
564  "<ParameterDescription key=\"FunctionParameter_254\" name=\"Keq\" order=\"5\" role=\"constant\"/>\n"
565  "</ListOfParameterDescriptions>\n"
566  "</Function>\n"
567  "<Function key=\"Function_37\" name=\"Bi (irreversible)\" type=\"PreDefined\" reversible=\"false\">\n"
568  " <MiriamAnnotation>\n"
569  "<rdf:RDF xmlns:CopasiMT=\"http://www.copasi.org/RDF/MiriamTerms#\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\">\n"
570  "<rdf:Description rdf:about=\"#Function_37\">\n"
571  "<CopasiMT:is rdf:resource=\"urn:miriam:obo.sbo:SBO:0000151\"/>\n"
572  "</rdf:Description>\n"
573  "</rdf:RDF>\n"
574  " </MiriamAnnotation>\n"
575  " <Comment>\n"
576  " enzymatic rate law for irreversible non-modulated non-interacting bireactant enzymes\n"
577  " </Comment>\n"
578  " <Expression>\n"
579  " vmax*A*B/(Kma*Kmb + A*Kmb + B*Kma + A*B)\n"
580  " </Expression>\n"
581  " <ListOfParameterDescriptions>\n"
582  " <ParameterDescription key=\"FunctionParameter_255\" name=\"vmax\" order=\"0\" role=\"constant\"/>\n"
583  " <ParameterDescription key=\"FunctionParameter_256\" name=\"A\" order=\"1\" role=\"substrate\"/>\n"
584  " <ParameterDescription key=\"FunctionParameter_257\" name=\"B\" order=\"2\" role=\"substrate\"/>\n"
585  " <ParameterDescription key=\"FunctionParameter_258\" name=\"Kma\" order=\"3\" role=\"constant\"/>\n"
586  " <ParameterDescription key=\"FunctionParameter_259\" name=\"Kmb\" order=\"4\" role=\"constant\"/>\n"
587  " </ListOfParameterDescriptions>\n"
588  "</Function>\n"
589  "</ListOfFunctions>\n"
590  "</COPASI>\n"
591  ;
FunctionDBxml
static char FunctionDBxml[]
Definition: FunctionDB.xml.h:18
Generated on Thu Jul 2 2015 14:50:42 for COPASI API by   doxygen 1.8.6