COPASI API
4.40.278
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This is the complete list of members for CFunction, including all inherited members.
__SIZE enum value | CDataObject | |
add(CDataObject *pObject, const bool &adopt=true) | CDataContainer | virtual |
addIssue(const CIssue &issue) | CDataObject | |
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected |
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected |
addReference(const CDataContainer *pReference) | CDataObject | |
addUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
addVariable(const std::string &name, CFunctionParameter::Role usage=CFunctionParameter::Role::VARIABLE, const CFunctionParameter::DataType &type=CFunctionParameter::DataType::FLOAT64) | CFunction | |
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected |
allocateMiriamInfo(CDataContainer *pParent) | CAnnotation | static |
appendDeletedDependentData(CUndoData &undoData) const | CDataContainer | virtual |
applyData(const CData &data, CUndoData::CChangeSet &changes) | CFunction | virtual |
Array enum value | CDataObject | |
buildCalculationSequence() | CEvaluationTree | protected |
calculate() | CEvaluationTree | protected |
calculateValue() override | CDataObject | virtual |
calcValue(const CCallParameters< C_FLOAT64 > &callParameters) | CFunction | virtual |
calls(std::set< std::string > &list) const | CEvaluationTree | |
CAnnotation() | CAnnotation | |
CAnnotation(const CAnnotation &src) | CAnnotation | |
castObject(CDataObject *pObject) | CAnnotation | static |
castObject(const CDataObject *pObject) | CAnnotation | static |
CDataContainer() | CDataContainer | private |
CDataContainer(const CDataContainer &src) | CDataContainer | protected |
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | |
CDataContainer(const CDataContainer &src, const CDataContainer *pParent) | CDataContainer | |
CDataObject() | CDataObject | protected |
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataObject | protected |
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL) | CDataObject | |
CEvaluationTree(const CEvaluationTree &src) | CEvaluationTree | protected |
CEvaluationTree(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT, const Type &type=Function) | CEvaluationTree | |
CEvaluationTree(const CEvaluationTree &src, const CDataContainer *pParent) | CEvaluationTree | |
CFunction(const CFunction &src) | CFunction | protected |
CFunction(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT, const Type &type=Function) | CFunction | |
CFunction(const CFunction &src, const CDataContainer *pParent) | CFunction | |
clearNodes() | CEvaluationTree | protected |
CObjectInterface() | CObjectInterface | |
CObjectInterface(const CObjectInterface &src) | CObjectInterface | |
compile() | CEvaluationTree | virtual |
compileNodes() | CEvaluationTree | protected |
completeFunctionList(std::vector< const CFunction * > &list, const size_t &added=0) | CFunction | static |
Container enum value | CDataObject | |
Container2Info | CAnnotation | privatestatic |
ContainerList typedef | CObjectInterface | |
containsCN(const DataObjectSet &elements) const | CEvaluationTree | |
copy(const CEvaluationTree &src) | CEvaluationTree | static |
create(CEvaluationTree::Type type) | CEvaluationTree | static |
createCopy() const | CFunction | |
createListOfParametersForMathML(std::vector< std::vector< std::string > > &env) | CFunction | |
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const | CFunction | virtual |
CUndoObjectInterface() | CUndoObjectInterface | |
CUndoObjectInterface(const CUndoObjectInterface &src) | CUndoObjectInterface | |
DataModel enum value | CDataObject | |
DataObject(const CObjectInterface *pInterface) | CObjectInterface | static |
DataObjectSet typedef | CDataObject | |
destruct() override | CDataObject | virtual |
DisplayName enum value | CDataObject | |
EmptyList | CDataContainer | static |
Expression enum value | CEvaluationTree | |
Flag enum name | CDataObject | |
freeMiriamInfo(CDataContainer *pParent) | CAnnotation | static |
fromAST(const ASTNode *pASTNode, bool isFunction) | CEvaluationTree | static |
fromData(const CData &data, CUndoObjectInterface *pParent) | CFunction | static |
Function enum value | CEvaluationTree | |
generateUuid() | CUndoObjectInterface | |
getChildObjectUnits(const CDataObject *pObject) const | CDataContainer | virtual |
getCN() const override | CDataObject | virtual |
getDataObject() const override | CDataObject | virtual |
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const | CDataContainer | |
getErrorPosition() const | CEvaluationTree | |
getIndex(const CDataObject *pObject) const | CDataContainer | virtual |
getInfix() const | CEvaluationTree | |
getKey() const | CFunction | virtual |
getMiriamAnnotation() const | CAnnotation | |
getNodeList() const | CEvaluationTree | |
getNodeObject(const CCommonName &CN) const | CEvaluationTree | virtual |
getNotes() const | CAnnotation | |
getObject(const CCommonName &cn) const override | CDataContainer | virtual |
getObjectAncestor(const std::string &type) const | CDataObject | |
getObjectDataModel() const | CDataObject | |
getObjectDisplayName() const override | CDataObject | virtual |
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName) | CObjectInterface | static |
getObjectFromCN(const CCommonName &cn) const | CDataObject | |
getObjectName() const | CDataObject | |
getObjectParent() const | CDataObject | |
getObjects() const | CDataContainer | virtual |
getObjects() | CDataContainer | virtual |
getObjectType() const | CDataObject | |
getPrerequisites() const override | CDataObject | virtual |
getRoot() | CEvaluationTree | |
getRoot() const | CEvaluationTree | |
getSBMLId() const | CFunction | |
getType() const | CEvaluationTree | |
getUnits() const override | CDataContainer | virtual |
getUnsupportedAnnotations() | CAnnotation | |
getUnsupportedAnnotations() const | CAnnotation | |
getUuid() const | CUndoObjectInterface | |
getValidity() const override | CDataObject | virtual |
getValueObject() const override | CDataContainer | virtual |
getValuePointer() const override | CDataObject | virtual |
getVariableIndex(const std::string &name) const | CFunction | virtual |
getVariables() | CFunction | |
getVariables() const | CFunction | |
getVariableValue(const size_t &index) const | CFunction | virtual |
Gui enum value | CDataObject | |
hasCircularDependency() const | CEvaluationTree | |
hasDiscontinuity() const | CEvaluationTree | |
hasFlag(const Flag &flag) const | CDataObject | |
initMiriamAnnotation(const std::string &newId) | CAnnotation | |
initObjects() | CEvaluationTree | private |
initVariables() | CFunction | protected |
insert(const CData &data) override | CDataContainer | virtual |
isBoolean() const | CEvaluationTree | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override | CDataObject | virtual |
isReadOnly() const | CFunction | virtual |
isReversible() const | CFunction | |
isSuitable(const size_t noSubstrates, const size_t noProducts, const TriLogic reversible) | CFunction | |
isValidXML(const std::string &xml) | CAnnotation | privatestatic |
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH) | CFunction | virtual |
mAggregateValidity | CDataObject | private |
mapObjectNodes(const CDataContainer *pSrc, const CDataContainer *pTarget) | CEvaluationTree | |
MassAction enum value | CEvaluationTree | |
MathExpression enum value | CEvaluationTree | |
Matrix enum value | CDataObject | |
mCalculationSequence | CEvaluationTree | protected |
mCallParametersBegin | CFunction | private |
mErrorPosition | CEvaluationTree | private |
mInfix | CEvaluationTree | protected |
mKey | CAnnotation | protected |
mMiriamAnnotation | CAnnotation | private |
mNotes | CAnnotation | private |
mObjectDisplayName | CDataObject | mutableprivate |
mObjectFlag | CDataObject | private |
mObjectName | CDataObject | private |
mObjects | CDataContainer | protected |
mObjectType | CDataObject | private |
ModelEntity enum value | CDataObject | |
mpNodeList | CEvaluationTree | protected |
mpObjectDisplayName | CDataObject | mutableprivate |
mpObjectName | CDataObject | mutableprivate |
mpObjectParent | CDataObject | private |
mPrerequisits | CDataObject | protected |
mpRootNode | CEvaluationTree | private |
mpRootValue | CEvaluationTree | protected |
mpUuid | CUndoObjectInterface | private |
mReferencedValidities | CDataObject | private |
mReferences | CDataObject | protected |
mReversible | CFunction | private |
mSBMLId | CFunction | private |
mType | CEvaluationTree | protected |
mUnsupportedAnnotations | CAnnotation | private |
mUuidLocked | CUndoObjectInterface | private |
mValidity | CObjectInterface | mutableprotected |
mValue | CEvaluationTree | protected |
mVariables | CFunction | private |
mXMLId | CAnnotation | private |
NameVector enum value | CDataObject | |
NonUniqueName enum value | CDataObject | |
objectMap typedef | CDataContainer | |
objectRenamed(CDataObject *pObject, const std::string &oldName) | CDataContainer | |
ObjectSet typedef | CObjectInterface | |
operator<<(std::ostream &os, const CFunction &f) | CFunction | friend |
operator==(const CFunction &rhs) const | CFunction | |
CEvaluationTree::operator==(const CEvaluationTree &rhs) const | CEvaluationTree | |
CAnnotation::operator==(const CAnnotation &rhs) const | CAnnotation | |
parse() | CEvaluationTree | protected |
PreDefined enum value | CEvaluationTree | |
prerequisitsContains(const DataObjectSet &objects) const | CDataObject | |
print(std::ostream *ostream) const override | CDataObject | virtual |
Reference enum value | CDataObject | |
refreshAggregateValidity() | CDataObject | private |
remove(CDataObject *pObject) | CDataContainer | virtual |
removeIssue(const CIssue &issue) | CDataObject | |
removeReference(const CDataContainer *pReference) | CDataObject | |
removeUnsupportedAnnotation(const std::string &name) | CAnnotation | |
replaceUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
Root enum value | CDataObject | |
sanitizeObjectName(std::string &name) | CDataObject | static |
Separator enum value | CDataObject | |
setInfix(const std::string &infix) | CFunction | virtual |
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
setNotes(const std::string ¬es) | CAnnotation | |
setObjectName(const std::string &name) | CDataObject | |
setObjectParent(const CDataContainer *pParent) | CDataObject | virtual |
setReversible(const TriLogic &reversible) | CFunction | |
setRoot(CEvaluationNode *pRootNode) | CEvaluationTree | virtual |
setSBMLId(const std::string &id) | CFunction | |
setTree(const ASTNode &pRootNode, bool isFunction) | CEvaluationTree | |
setType(const CEvaluationTree::Type &type) | CEvaluationTree | protected |
setUuid(const xg::Guid &uuid) | CUndoObjectInterface | |
setUuid(const std::string &uuid) | CUndoObjectInterface | |
size() const | CEvaluationTree | |
splitFunction(const CEvaluationNode *node, const std::string &name1, const std::string &name2) const | CFunction | |
StaticString enum value | CDataObject | |
toAST(const CDataModel *pDataModel) const | CEvaluationTree | virtual |
toData() const | CFunction | virtual |
Type enum name | CEvaluationTree | |
TypeName | CEvaluationTree | static |
UnsupportedAnnotation typedef | CAnnotation | |
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject) | CUndoObjectInterface | virtual |
updateTree() | CEvaluationTree | |
UserDefined enum value | CEvaluationTree | |
validityChanged(const CValidity &changedValidity) override | CDataObject | virtual |
validityRemoved(const CValidity &changedValidity) | CDataObject | |
ValueBool enum value | CDataObject | |
ValueDbl enum value | CDataObject | |
ValueInt enum value | CDataObject | |
ValueInt64 enum value | CDataObject | |
ValueString enum value | CDataObject | |
Vector enum value | CDataObject | |
writeMathML(std::ostream &out, size_t l=0) const | CFunction | virtual |
writeMathML(const std::vector< std::vector< std::string > > &variables, bool expand=true, bool fullExpand=true) const | CFunction | virtual |
XMLType | CEvaluationTree | static |
~CAnnotation() | CAnnotation | virtual |
~CDataContainer() | CDataContainer | virtual |
~CDataObject() | CDataObject | virtual |
~CEvaluationTree() | CEvaluationTree | virtual |
~CFunction() | CFunction | virtual |
~CObjectInterface() | CObjectInterface | virtual |
~CUndoObjectInterface() | CUndoObjectInterface | virtual |