CCompartment Member List

This is the complete list of members for CCompartment, including all inherited members.

__SIZE enum value	CDataObject
add(CDataObject *pObject, const bool &adopt=true)	CDataContainer	virtual
addIssue(const CIssue &issue)	CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addMetabolite(CMetab *metabolite)	CCompartment
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addReference(const CDataContainer *pReference)	CDataObject
addUnsupportedAnnotation(const std::string &name, const std::string &xml)	CAnnotation
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
allocateMiriamInfo(CDataContainer *pParent)	CAnnotation	static
appendDeletedDependentData(CUndoData &undoData) const	CDataContainer	virtual
applyData(const CData &data, CUndoData::CChangeSet &changes)	CCompartment	virtual
Array enum value	CDataObject
calculate()	CModelEntity	virtual
calculateValue() override	CDataObject	virtual
CAnnotation()	CAnnotation
CAnnotation(const CAnnotation &src)	CAnnotation
castObject(CDataObject *pObject)	CAnnotation	static
castObject(const CDataObject *pObject)	CAnnotation	static
CCompartment(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT)	CCompartment
CCompartment(const CCompartment &src, const CDataContainer *pParent)	CCompartment
CDataContainer()	CDataContainer	private
CDataContainer(const CDataContainer &src)	CDataContainer	protected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)	CDataContainer
CDataObject()	CDataObject	protected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataObject	protected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)	CDataObject
cleanup()	CCompartment
CModelEntity(const CModelEntity &src)	CModelEntity	protected
CModelEntity(const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT, const std::string &type="ModelEntity", const CFlags< Flag > &flag=CFlags< Flag >::None)	CModelEntity
CModelEntity(const CModelEntity &src, const CDataContainer *pParent)	CModelEntity
CObjectInterface()	CObjectInterface
CObjectInterface(const CObjectInterface &src)	CObjectInterface
compile()	CModelEntity	virtual
Container enum value	CDataObject
Container2Info	CAnnotation	privatestatic
ContainerList typedef	CObjectInterface
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const	CCompartment	virtual
CUndoObjectInterface()	CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)	CUndoObjectInterface
DataModel enum value	CDataObject
DataObject(const CObjectInterface *pInterface)	CObjectInterface	static
DataObjectSet typedef	CDataObject
destruct() override	CDataObject	virtual
DisplayName enum value	CDataObject
EmptyList	CDataContainer	static
Flag enum name	CDataObject
freeMiriamInfo(CDataContainer *pParent)	CAnnotation	static
fromData(const CData &data, CUndoObjectInterface *pParent)	CCompartment	static
generateUuid()	CUndoObjectInterface
getChildObjectUnits(const CDataObject *pObject) const override	CModelEntity	virtual
getCN() const override	CDataObject	virtual
getDataObject() const override	CDataObject	virtual
getDefaultNoiseExpression() const	CModelEntity
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const	CDataContainer
getDimensionality() const	CCompartment
getExpression() const	CModelEntity
getExpressionPtr() const	CModelEntity
getExpressionPtr()	CModelEntity
getIndex(const CDataObject *pObject) const	CDataContainer	virtual
getInitialExpression() const	CModelEntity
getInitialExpressionPtr() const	CModelEntity
getInitialExpressionPtr()	CModelEntity
getInitialValue() const	CModelEntity
getInitialValueReference() const	CModelEntity
getKey() const override	CModelEntity	virtual
getMetabolites()	CCompartment
getMetabolites() const	CCompartment
getMiriamAnnotation() const	CAnnotation
getModel() const	CModelEntity
getNoiseExpression() const	CModelEntity
getNoiseExpressionPtr() const	CModelEntity
getNoiseExpressionPtr()	CModelEntity
getNoiseReference() const	CModelEntity
getNotes() const	CAnnotation
getObject(const CCommonName &cn) const override	CDataContainer	virtual
getObjectAncestor(const std::string &type) const	CDataObject
getObjectDataModel() const	CDataObject
getObjectDisplayName() const override	CDataObject	virtual
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)	CObjectInterface	static
getObjectFromCN(const CCommonName &cn) const	CDataObject
getObjectName() const	CDataObject
getObjectParent() const	CDataObject
getObjects() const	CDataContainer	virtual
getObjects()	CDataContainer	virtual
getObjectType() const	CDataObject
getPrerequisites() const override	CDataObject	virtual
getRate() const	CModelEntity
getRateReference() const	CModelEntity
getSBMLId() const	CModelEntity
getStatus() const	CModelEntity
getUnitExpression() const	CModelEntity	virtual
getUnits() const	CCompartment	virtual
getUnsupportedAnnotations()	CAnnotation
getUnsupportedAnnotations() const	CAnnotation
getUuid() const	CUndoObjectInterface
getValidity() const override	CDataObject	virtual
getValue() const	CModelEntity
getValueObject() const override	CModelEntity	virtual
getValuePointer() const override	CModelEntity	virtual
getValueReference() const	CModelEntity
Gui enum value	CDataObject
hasFlag(const Flag &flag) const	CDataObject
hasNoise() const	CModelEntity
initMiriamAnnotation(const std::string &newId)	CAnnotation
initObjects()	CCompartment	private
insert(const CData &data) override	CDataContainer	virtual
isFixed() const	CModelEntity	inline
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override	CDataObject	virtual
isUsed() const	CModelEntity
isValidXML(const std::string &xml)	CAnnotation	privatestatic
load(CReadConfig &configbuffer)	CCompartment
mAggregateValidity	CDataObject	private
Matrix enum value	CDataObject
mDimensionality	CCompartment	protected
mHasNoise	CModelEntity	protected
mIValue	CModelEntity	protected
mKey	CAnnotation	protected
mMetabolites	CCompartment	private
mMiriamAnnotation	CAnnotation	private
mNoise	CModelEntity	protected
mNotes	CAnnotation	private
mObjectDisplayName	CDataObject	mutableprivate
mObjectFlag	CDataObject	private
mObjectName	CDataObject	private
mObjects	CDataContainer	protected
mObjectType	CDataObject	private
ModelEntity enum value	CDataObject
mpExpression	CModelEntity	protected
mpInitialExpression	CModelEntity	protected
mpIValueReference	CModelEntity	protected
mpModel	CModelEntity	mutableprotected
mpNoiseExpression	CModelEntity	protected
mpNoiseReference	CModelEntity	protected
mpObjectDisplayName	CDataObject	mutableprivate
mpObjectName	CDataObject	mutableprivate
mpObjectParent	CDataObject	private
mpRateReference	CModelEntity	protected
mPrerequisits	CDataObject	protected
mpUuid	CUndoObjectInterface	private
mpValueReference	CModelEntity	protected
mRate	CModelEntity	protected
mReferencedValidities	CDataObject	private
mReferences	CDataObject	protected
mSBMLId	CModelEntity	mutableprotected
mStatus	CModelEntity	private
mUnitExpression	CModelEntity	protected
mUnsupportedAnnotations	CAnnotation	private
mUsed	CModelEntity	private
mUuidLocked	CUndoObjectInterface	private
mValidity	CObjectInterface	mutableprotected
mValue	CModelEntity	protected
mXMLId	CAnnotation	private
NameVector enum value	CDataObject
NonUniqueName enum value	CDataObject
objectMap typedef	CDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)	CDataContainer
ObjectSet typedef	CObjectInterface
operator<<(std::ostream &os, const CCompartment &d)	CCompartment	friend
operator==(const CAnnotation &rhs) const	CAnnotation
prerequisitsContains(const DataObjectSet &objects) const	CDataObject
print(std::ostream *ostream) const override	CDataObject	virtual
Reference enum value	CDataObject
refreshAggregateValidity()	CDataObject	private
remove(CDataObject *pObject)	CDataContainer	virtual
removeIssue(const CIssue &issue)	CDataObject
removeReference(const CDataContainer *pReference)	CDataObject
removeUnsupportedAnnotation(const std::string &name)	CAnnotation
replaceUnsupportedAnnotation(const std::string &name, const std::string &xml)	CAnnotation
Root enum value	CDataObject
sanitizeObjectName(std::string &name)	CDataObject	static
Separator enum value	CDataObject
setDimensionality(unsigned C_INT32 dim)	CCompartment
setExpression(const std::string &expression)	CModelEntity
setExpressionPtr(CExpression *pExpression)	CModelEntity
setHasNoise(const bool &hasNoise)	CModelEntity
setInitialExpression(const std::string &expression)	CModelEntity
setInitialExpressionPtr(CExpression *pExpression)	CModelEntity
setInitialValue(const C_FLOAT64 &initialValue)	CModelEntity	virtual
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId)	CAnnotation
setNoiseExpression(const std::string &expression)	CModelEntity
setNoiseExpressionPtr(CExpression *pExpression)	CModelEntity
setNotes(const std::string &notes)	CAnnotation
setObjectName(const std::string &name)	CDataObject
setObjectParent(const CDataContainer *pParent) override	CModelEntity	virtual
setRate(const C_FLOAT64 &rate)	CModelEntity
setSBMLId(const std::string &id) const	CModelEntity
setStatus(const CModelEntity::Status &status)	CModelEntity
setUnitExpression(std::string unitExpression)	CModelEntity	virtual
setUsed(const bool &used)	CModelEntity
setUuid(const xg::Guid &uuid)	CUndoObjectInterface
setUuid(const std::string &uuid)	CUndoObjectInterface
setValue(const C_FLOAT64 &value)	CModelEntity	virtual
StaticString enum value	CDataObject
Status enum name	CModelEntity
StatusName	CModelEntity	static
toData() const	CCompartment	virtual
UnsupportedAnnotation typedef	CAnnotation
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)	CUndoObjectInterface	virtual
validityChanged(const CValidity &changedValidity) override	CDataObject	virtual
validityRemoved(const CValidity &changedValidity)	CDataObject
ValueBool enum value	CDataObject
ValueDbl enum value	CDataObject
ValueInt enum value	CDataObject
ValueInt64 enum value	CDataObject
ValueString enum value	CDataObject
Vector enum value	CDataObject
XMLStatus	CModelEntity	static
~CAnnotation()	CAnnotation	virtual
~CCompartment()	CCompartment	virtual
~CDataContainer()	CDataContainer	virtual
~CDataObject()	CDataObject	virtual
~CModelEntity()	CModelEntity
~CObjectInterface()	CObjectInterface	virtual
~CUndoObjectInterface()	CUndoObjectInterface	virtual