__SIZE enum value | CDataObject | |
add(CDataObject *pObject, const bool &adopt=true) | CDataContainer | virtual |
addGroup(const std::string &name) | CCopasiParameterGroup | |
addIssue(const CIssue &issue) | CDataObject | |
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected |
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected |
addOptConstraint(const CCommonName &objectCN) | COptProblem | |
addOptItem(const CCommonName &objectCN) | COptProblem | |
addParameter(const CCopasiParameter ¶meter) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) | CCopasiParameterGroup | |
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) | CCopasiParameterGroup | inline |
addParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
addReference(const CDataContainer *pReference) | CDataObject | |
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | protected |
adjustForIntervals(C_FLOAT64 *pValue, const C_FLOAT64 &min, const C_FLOAT64 &max) | COptProblem | |
adjustStartValue(COptItem &optItem) | COptProblem | |
adjustStartValuesForIntervals() | COptProblem | |
allocateValidValues(const Type &type, void *&pValidValues) | CCopasiParameter | static |
allocateValue(const Type &type, void *&pValue) | CCopasiParameter | static |
appendDeletedDependentData(CUndoData &undoData) const | CDataContainer | virtual |
applyData(const CData &data, CUndoData::CChangeSet &changes) | CCopasiParameterGroup | virtual |
Array enum value | CDataObject | |
assertGroup(const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) | CCopasiParameterGroup | |
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) | CCopasiParameterGroup | inline |
assignDefault(const void *pDefault) | CCopasiParameter | private |
assignValidValues(const void *pValidValues) | CCopasiParameter | private |
assignValue(const Type &type, void *&pValue, const void *pNewValue) | CCopasiParameter | static |
assignValue(const void *pValue) | CCopasiParameter | private |
beginIndex() const | CCopasiParameterGroup | |
beginName() const | CCopasiParameterGroup | |
calculate() | CRealProblem | virtual |
calculateStatistics(const C_FLOAT64 &factor=1.0e-003, const C_FLOAT64 &resolution=1.0e-009) | COptProblem | virtual |
calculateValue() override | COptProblem | virtual |
CCopasiParameter(const CCopasiParameter &src) | CCopasiParameter | protected |
CCopasiParameter() | CCopasiParameter | private |
CCopasiParameter(const CCopasiParameter &src, const CDataContainer *pParent) | CCopasiParameter | |
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter") | CCopasiParameter | |
CCopasiParameterGroup() | CCopasiParameterGroup | protected |
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL) | CCopasiParameterGroup | |
CCopasiParameterGroup(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup") | CCopasiParameterGroup | |
CCopasiProblem() | CCopasiProblem | private |
CCopasiProblem(const CTaskEnum::Task &type, const CDataContainer *pParent) | CCopasiProblem | protected |
CCopasiProblem(const CCopasiProblem &src) | CCopasiProblem | protected |
CCopasiProblem(const CCopasiProblem &src, const CDataContainer *pParent) | CCopasiProblem | |
CDataContainer() | CDataContainer | private |
CDataContainer(const CDataContainer &src) | CDataContainer | protected |
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataContainer | |
CDataContainer(const CDataContainer &src, const CDataContainer *pParent) | CDataContainer | |
CDataObject() | CDataObject | protected |
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | CDataObject | protected |
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL) | CDataObject | |
checkFunctionalConstraints() | COptProblem | virtual |
checkIntervals() | COptProblem | |
checkParametricConstraints() | COptProblem | virtual |
clear() | CCopasiParameterGroup | |
clearCallBack() | CCopasiProblem | virtual |
CObjectInterface() | CObjectInterface | |
CObjectInterface(const CObjectInterface &src) | CObjectInterface | |
const_name_iterator typedef | CCopasiParameterGroup | |
Container enum value | CDataObject | |
ContainerList typedef | CObjectInterface | |
COptProblem(const CTaskEnum::Task &type=CTaskEnum::Task::optimization, const CDataContainer *pParent=NO_PARENT) | COptProblem | |
COptProblem(const COptProblem &src, const CDataContainer *pParent) | COptProblem | |
copy() const | CCopasiProblem | |
CRealProblem() | CRealProblem | |
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const | CCopasiParameterGroup | virtual |
createValue() | CCopasiParameter | private |
CUndoObjectInterface() | CUndoObjectInterface | |
CUndoObjectInterface(const CUndoObjectInterface &src) | CUndoObjectInterface | |
DataModel enum value | CDataObject | |
DataObject(const CObjectInterface *pInterface) | CObjectInterface | static |
DataObjectSet typedef | CDataObject | |
deleteValidValues(const Type &type, void *&pValidValues) | CCopasiParameter | static |
deleteValue(const Type &type, void *&pValue) | CCopasiParameter | static |
destruct() override | CDataObject | virtual |
DisplayName enum value | CDataObject | |
elements typedef | CCopasiParameterGroup | |
elevateChildren() override | COptProblem | virtual |
EmptyList | CDataContainer | static |
endIndex() const | CCopasiParameterGroup | |
endName() const | CCopasiParameterGroup | |
eUserInterfaceFlag enum name | CCopasiParameter | |
evalMinimizeIntervals(const C_FLOAT64 &value) | COptProblem | |
Flag enum name | CDataObject | |
fromData(const CData &data, CUndoObjectInterface *pParent) | CCopasiParameter | static |
geFailedConstraintCounter() const | COptProblem | |
generateUuid() | CUndoObjectInterface | |
getCalculateStatistics() const | COptProblem | |
getCalculateValue() const | COptProblem | |
getCallBack() const | CCopasiProblem | |
getChildObjectUnits(const CDataObject *pObject) const | CDataContainer | virtual |
getCN() const override | CCopasiParameter | virtual |
getConstraintEvaluations() const | COptProblem | |
getConstraintList() const | COptProblem | |
getContainerVariables(const bool &algorithmOrder=false) const | COptProblem | |
getCounters() const | COptProblem | |
getDataObject() const override | CDataObject | virtual |
getDefault() const | CCopasiParameter | inline |
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const | CDataContainer | |
getElementTemplates() | CCopasiParameterGroup | |
getElementTemplates() const | CCopasiParameterGroup | |
getExecutionTime() const | COptProblem | |
getFailedEvaluationsExc() const | COptProblem | |
getFailedEvaluationsNaN() const | COptProblem | |
getFunctionEvaluations() const | COptProblem | |
getGroup(const std::string &name) | CCopasiParameterGroup | |
getGroup(const std::string &name) const | CCopasiParameterGroup | |
getGroup(const size_t &index) | CCopasiParameterGroup | |
getGroup(const size_t &index) const | CCopasiParameterGroup | |
getIndex(const CDataObject *pObject) const | CCopasiParameterGroup | virtual |
getIndex(const std::string &name) const | CCopasiParameterGroup | |
getKey(const std::string &name) const | CCopasiParameterGroup | |
getKey(const size_t &index) const | CCopasiParameterGroup | |
CCopasiParameter::getKey() const override | CCopasiParameter | virtual |
getMathContainer() const | CCopasiProblem | |
getName(const size_t &index) const | CCopasiParameterGroup | virtual |
getObject(const CCommonName &cn) const | CCopasiParameterGroup | virtual |
getObjectAncestor(const std::string &type) const | CDataObject | |
getObjectDataModel() const | CDataObject | |
getObjectDisplayName() const override | CCopasiParameter | virtual |
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName) | CObjectInterface | static |
getObjectFromCN(const CCommonName &cn) const | CDataObject | |
getObjectiveFunction() | COptProblem | |
getObjectName() const | CDataObject | |
getObjectParent() const | CDataObject | |
getObjects() const | CDataContainer | virtual |
getObjects() | CDataContainer | virtual |
getObjectType() const | CDataObject | |
getOptConstraint(const size_t &index) | COptProblem | |
getOptConstraintSize() const | COptProblem | |
getOptItem(const size_t &index) | COptProblem | |
getOptItemList(const bool &algorithmOrder=false) const | COptProblem | |
getOptItemSize() const | COptProblem | |
getParameter(std::string name) | CCopasiParameterGroup | |
getParameter(std::string name) const | CCopasiParameterGroup | |
getParameter(const size_t &index) | CCopasiParameterGroup | |
getParameter(const size_t &index) const | CCopasiParameterGroup | |
getPrerequisites() const override | CDataObject | virtual |
getRandomizeStartValues() const | COptProblem | |
getSolutionValue() const | COptProblem | |
getSolutionVariables(const bool &algorithmOrder=false) const | COptProblem | |
getSubTask() const override | COptProblem | virtual |
getSubtaskType() const | COptProblem | |
getType() const | CCopasiProblem | |
CCopasiParameterGroup::getType(const std::string &name) const | CCopasiParameterGroup | |
CCopasiParameterGroup::getType(const size_t &index) const | CCopasiParameterGroup | |
getUniqueParameterName(const CCopasiParameter *pParameter) const | CCopasiParameterGroup | |
getUnits() const override | CDataContainer | virtual |
getUserInterfaceFlag() const | CCopasiParameter | |
getUuid() const | CUndoObjectInterface | |
getValidity() const override | CDataObject | virtual |
getValidValues() const | CCopasiParameter | inline |
getValidValues() | CCopasiParameter | inline |
getValidValuesPointer() const | CCopasiParameter | |
getValue(const std::string &name) const | CCopasiParameterGroup | inline |
getValue(const std::string &name) | CCopasiParameterGroup | inline |
getValue(const size_t &index) const | CCopasiParameterGroup | inline |
getValue(const size_t &index) | CCopasiParameterGroup | inline |
CCopasiParameter::getValue() const | CCopasiParameter | inline |
CCopasiParameter::getValue() | CCopasiParameter | inline |
getValueObject() const override | CDataContainer | virtual |
getValuePointer() const override | COptProblem | virtual |
getValueReference() const | CCopasiParameter | |
getVariableGradients() const | COptProblem | |
getVariableSize() const | COptProblem | |
Gui enum value | CDataObject | |
hasFlag(const Flag &flag) const | CDataObject | |
hasValidValues() const | CCopasiParameter | |
haveTemplate() const | CCopasiParameterGroup | |
incrementCounters(const sCounter &increment) | COptProblem | |
index_iterator typedef | CCopasiParameterGroup | |
initialize() override | COptProblem | virtual |
initializeParameter() | COptProblem | private |
initializeSubtaskBeforeOutput() | COptProblem | virtual |
initObjects() | COptProblem | private |
insert(const CData &data) | CCopasiParameterGroup | virtual |
inValidValues(const CType &value) const | CCopasiParameter | inlineprivate |
isBasic() const | CCopasiParameter | |
isDefault() const | CCopasiParameter | |
isEditable() const | CCopasiParameter | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override | CDataObject | virtual |
isUnsupported() const | CCopasiParameter | |
isValidValue(const C_FLOAT64 &value) const | CCopasiParameter | |
isValidValue(const C_INT32 &value) const | CCopasiParameter | |
isValidValue(const unsigned C_INT32 &value) const | CCopasiParameter | |
isValidValue(const bool &value) const | CCopasiParameter | |
isValidValue(const std::string &value) const | CCopasiParameter | |
isValidValue(const CCommonName &value) const | CCopasiParameter | |
isValidValue(const std::vector< CCopasiParameter * > &value) const | CCopasiParameter | |
isValidValue(const CType &) const | CCopasiParameter | inline |
mAdjustedItems | COptProblem | protected |
mAggregateValidity | CDataObject | private |
Matrix enum value | CDataObject | |
maximize() const | COptProblem | |
mCalculateValue | COptProblem | protected |
mContainerVariables | COptProblem | mutableprotected |
mContainerVariablesAlgorithm | COptProblem | mutableprotected |
mCounters | COptProblem | protected |
mCountInfluencingIntervals | COptProblem | protected |
mCPUTime | COptProblem | protected |
mGradient | COptProblem | protected |
mHaveStatistics | COptProblem | protected |
mhCounter | COptProblem | protected |
mhSolutionValue | COptProblem | protected |
mInitialRefreshSequence | COptProblem | protected |
MissingValue | COptProblem | privatestatic |
mKey | CCopasiParameter | protected |
mMinInterval | COptProblem | protected |
mObjectDisplayName | CDataObject | mutableprivate |
mObjectFlag | CDataObject | private |
mObjectName | CDataObject | private |
mObjects | CDataContainer | protected |
mObjectType | CDataObject | private |
ModelEntity enum value | CDataObject | |
mOptItem2Index | COptProblem | protected |
mOptItemAlgorithm | COptProblem | protected |
mOriginalVariables | COptProblem | protected |
mpAdjust | COptProblem | protected |
mpConstraintItems | COptProblem | protected |
mpContainer | CCopasiProblem | protected |
mpDefault | CCopasiParameter | protected |
mpElementTemplates | CCopasiParameterGroup | private |
mpGrpConstraints | COptProblem | protected |
mpGrpItems | COptProblem | protected |
mpMathObjectiveExpression | COptProblem | protected |
mpObjectDisplayName | CDataObject | mutableprivate |
mpObjectiveExpression | COptProblem | protected |
mpObjectName | CDataObject | mutableprivate |
mpObjectParent | CDataObject | private |
mpOptItems | COptProblem | protected |
mpParmCalculateStatistics | COptProblem | protected |
mpParmMaximize | COptProblem | protected |
mpParmObjectiveExpression | COptProblem | protected |
mpParmRandomizeStartValues | COptProblem | protected |
mpParmSubTaskCN | COptProblem | protected |
mpReport | CCopasiProblem | protected |
mPrerequisits | CDataObject | protected |
mProcessReport | CCopasiProblem | protected |
mpSubTask | COptProblem | mutableprotected |
mpSubTaskSrc | COptProblem | protected |
mpUuid | CUndoObjectInterface | private |
mpValidValues | CCopasiParameter | protected |
mpValue | CCopasiParameter | protected |
mpValueReference | CCopasiParameter | mutableprotected |
mReferencedValidities | CDataObject | private |
mReferences | CDataObject | protected |
mSolutionValue | COptProblem | protected |
mSolutionVariables | COptProblem | protected |
mSolutionVariablesAlgorithm | COptProblem | protected |
mStoreResults | COptProblem | protected |
mType | CCopasiProblem | private |
mUpdateConstraints | COptProblem | protected |
mUpdateIntervals | COptProblem | protected |
mUpdateObjectiveFunction | COptProblem | protected |
mUserInterfaceFlag | CCopasiParameter | protected |
mUuidLocked | CUndoObjectInterface | private |
mValidity | CObjectInterface | mutableprotected |
mWorstValue | COptProblem | protected |
name_iterator typedef | CCopasiParameterGroup | |
NameVector enum value | CDataObject | |
NonUniqueName enum value | CDataObject | |
objectMap typedef | CDataContainer | |
objectRenamed(CDataObject *pObject, const std::string &oldName) | CDataContainer | |
ObjectSet typedef | CObjectInterface | |
operator=(const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | |
CCopasiParameter::operator=(const CCopasiParameter &rhs) | CCopasiParameter | |
prerequisitsContains(const DataObjectSet &objects) const | CDataObject | |
print(std::ostream *ostream) const override | COptProblem | virtual |
printResult(std::ostream *ostream) const override | COptProblem | virtual |
randomizeStartValues() | COptProblem | |
Reference enum value | CDataObject | |
refreshAggregateValidity() | CDataObject | private |
rememberStartValues() | COptProblem | |
remove(CDataObject *pObject) | CCopasiParameterGroup | virtual |
removeIssue(const CIssue &issue) | CDataObject | |
removeOptConstraint(const size_t &index) | COptProblem | |
removeOptItem(const size_t &index) | COptProblem | |
removeParameter(const std::string &name) | CCopasiParameterGroup | |
removeParameter(const size_t &index) | CCopasiParameterGroup | |
removeParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
removeReference(const CDataContainer *pReference) | CDataObject | |
reset() | COptProblem | |
resetCounters() | COptProblem | |
restore(const bool &updateModel) override | COptProblem | virtual |
Root enum value | CDataObject | |
sanitizeObjectName(std::string &name) | CDataObject | static |
Separator enum value | CDataObject | |
setCalculateStatistics(const bool &calculate) | COptProblem | |
setCallBack(CProcessReportLevel callBack) override | COptProblem | virtual |
setDefault(const CType &defaultValue) | CCopasiParameter | inline |
setDefault(const std::vector< CCopasiParameter * > &defaultValue) | CCopasiParameter | |
setMathContainer(CMathContainer *pContainer) | CCopasiProblem | |
setMaximize(const bool &maximize) | COptProblem | |
setModel(CModel *model) | CCopasiProblem | virtual |
setObjectiveFunction(const std::string &infix) | COptProblem | |
setObjectName(const std::string &name) | CDataObject | |
setObjectParent(const CDataContainer *pParent) override | CCopasiParameter | virtual |
setParameters(const CVectorCore< C_FLOAT64 > ¶meters) | COptProblem | |
setRandomizeStartValues(const bool &randomize) | COptProblem | |
setSolution(const C_FLOAT64 &value, const CVector< C_FLOAT64 > &variables, const bool &algorithmOrder=false) | COptProblem | virtual |
setSubtaskType(const CTaskEnum::Task &subtaskType) | COptProblem | |
setUserInterfaceFlag(const UserInterfaceFlag &flag) | CCopasiParameterGroup | virtual |
setUuid(const xg::Guid &uuid) | CUndoObjectInterface | |
setUuid(const std::string &uuid) | CUndoObjectInterface | |
setValidValues(const std::vector< std::pair< CType, CType > > &validValues) | CCopasiParameter | inline |
setValidValues(const CEnumAnnotation< CType, Enum > &validValues) | CCopasiParameter | inline |
setValue(const std::string &name, const CType &value) | CCopasiParameterGroup | inline |
setValue(const size_t &index, const CType &value) | CCopasiParameterGroup | inline |
CCopasiParameter::setValue(const CType &value) | CCopasiParameter | inline |
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value) | CCopasiParameter | |
signalMathContainerChanged() | CCopasiProblem | protectedvirtual |
size(const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const | CCopasiParameterGroup | |
StaticString enum value | CDataObject | |
swap(const size_t &iFrom, const size_t &iTo) | CCopasiParameterGroup | |
swap(index_iterator &from, index_iterator &to) | CCopasiParameterGroup | |
swapOptItem(const size_t &iFrom, const size_t &iTo) | COptProblem | |
toData() const | CCopasiParameterGroup | virtual |
Type enum name | CCopasiParameter | |
TypeName | CCopasiParameter | static |
updateContainer(const bool &update) | COptProblem | protectedvirtual |
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject) | CCopasiParameterGroup | virtual |
UserInterfaceFlag typedef | CCopasiParameter | |
validityChanged(const CValidity &changedValidity) override | CDataObject | virtual |
validityRemoved(const CValidity &changedValidity) | CDataObject | |
ValidSubtasks | COptProblem | static |
ValueBool enum value | CDataObject | |
ValueDbl enum value | CDataObject | |
ValueInt enum value | CDataObject | |
ValueInt64 enum value | CDataObject | |
ValueString enum value | CDataObject | |
Vector enum value | CDataObject | |
XMLType | CCopasiParameter | static |
~CCopasiParameter() | CCopasiParameter | virtual |
~CCopasiParameterGroup() | CCopasiParameterGroup | virtual |
~CCopasiProblem() | CCopasiProblem | virtual |
~CDataContainer() | CDataContainer | virtual |
~CDataObject() | CDataObject | virtual |
~CObjectInterface() | CObjectInterface | virtual |
~COptProblem() | COptProblem | virtual |
~CRealProblem() | CRealProblem | |
~CUndoObjectInterface() | CUndoObjectInterface | virtual |