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4.11 (Build 65) Oct 25, 2013

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Changelog

Version 4.8 (Build 35)

Release Date: December 20, 2011

New Features since 4.7 (Build 34)

  • Graphical User Interface (CopasiUI)
    • Added plots and reports for parameter scans to the output assistant.
    • Only applicable plots and reports are shown in the output assistant by default.
  • Simulation Engine
    • Time Scale Separation Analysis can now handle multi compartment models.
    • The Time Scale Separation Analysis can now be applied to the full as well as the reduced model.
    • It is now possible to calculate the sensitivities of Eigen values.
    • Add kinetic function Bi (irreversible) to the builtin functions.

Bug Fixes since COPASI 4.6.33 (development)

  • Graphical User Interface (CopasiUI)
    • Fixed crash in the species table when clicking the comportment cell for a newly created model.
    • Fixed editing problem in the species table when creating a new species in a multi compartment model.
    • All sub windows are no closed automatically.
    • Fixed reaction interface to handle reactions with non integer stoichiometries correctly.
    • Fixed crash when creating a new model and canceling the save of the modified open model.
    • Fixed crash caused by sliders of a previous model in a single COPASI session.
    • Modifying sliders in a model triggers the save model dialog when closing COPASI.
    • Fixed crash caused by notes when creating a new model in an existing COPASI session and inserting a reaction in the reaction table.
    • Enabled resizing of columns in the EFM results.
    • Fixed problem caused by an ampersand '&' in an object name in the ODE display.
    • Enabled the Save button int the Time Scale Separation Analysis result.
    • Sliders for species are now always displayed in the current selected frame work (concentration or particle number).
    • The update model button in the optimization and parameter estimation results be have now similar to the update model check box in the task.
  • Simulation Engine
    • Improved event detection during cascading events.
    • The deterministic integration is now only restarted after events if the ODEs have changed discontinuously improving performance and avoiding restart failures.
    • Improved the modulo operator '%' to handle zero as the second argument.
    • Fixed Time Scale Separation Analysis methods ILDM and ILDM modified to return the same results as in Build-32
    • Prevent crash caused by invalid reactions in a CopasiML file.
    • Fixed unreported numeric overflow in the Ï„-Leap and Adaptive SSA/Ï„-Leap methods.
    • Fixed Gibson and Bruck method to correctly handle output of non integer particle number as initial values.
    • Improved error message for invalid parameter intervals in optimization and parameter estimation.
  • SBML
    • Fixed problem exporting empty reaction L3V1.
    • Corrected unit export for L3V1.
  • Language Bindings
    • Improved handling of spaces in function names.
    • Fixed crash in CModelEntity::setExpression.



Created by: shoops. Last Modification: Thursday 16 of May, 2013 17:09:44 EDT by shoops.