- a -
- abort_handler()
: test000101
- about()
: CopasiUI3Window
- AboutDialog()
: AboutDialog
- aboutQt()
: CopasiUI3Window
- accept()
: CQNameSelectionDialog
, CQProgressDialog
, CQReportDefinitionSelect
, CQScreenshotOptionsDialog
- acoth()
: CEvaluationNodeFunction
- acsch()
: CEvaluationNodeFunction
- adaptCurveForCircle()
: CQGLNetworkPainter
- adaptCurveForRectangles()
: CQGLNetworkPainter
- adaptToHeight()
: CLabel
- add()
: CCopasiContainer
, CCopasiVector< T >
, CCopasiVectorN< CType >
, CFunctionDB
, CFunctionParameters
, CKeyFactory
, CKeyFactory::HashTable
, CLyapWolfMethod
, CModelExpansion::ElementsMap
, CModelParameterGroup
, CMoiety
, CNormalCall
, CNormalLcm
, CNormalSum
, CompartmentInfo
, CQBrowserPaneDM
, CStateTemplate
, CStepMatrix
, CXMLAttributeList
, SBMLReference
- addAllPositions()
: CCellDesignerImporter
- addAndAdaptName()
: CFunctionDB
- addAnnotation()
: CMiaseBase
- addAssignment()
: CMathEventN
, CProcessQueue
- addCalculation()
: CProcessQueue
- addCallParameter()
: CFunctionParameterMap
- addChange()
: CMiaseModel
- addChannel()
: CPlotItem
- addChild()
: CCopasiNode< _Data >
, CEvaluationNodeCall
, CEvaluationNodeVector
- addChildElement()
: CLGroup
- addChildren()
: CEvaluationNode
- addColorDefinition()
: CLRenderInformationBase
- addColumn()
: CMiaseOutput
, CStepMatrix
- addCompartment()
: CModelExpansion::SetOfModelElements
- addCompartmentGlyph()
: CLayout
- addCompartments()
: CModelAdd
- addCompartmentsExpressions()
: CModelAdd
- addCompartmentVariables()
: CCopasiSpringLayout
- addContent()
: CMiaseParser
- addCrossValidation()
: CFitItem
- addCurve2D()
: CQPlotSubwidget
- addCurveElement()
: CLRenderCurve
- addCurveSegment()
: CLCurve
- addCurveSlot()
: CQPlotSubwidget
- addCurveTab()
: CQPlotSubwidget
- addDatamodel()
: CCopasiRootContainer
- addDefaultRenderInfoItemsToList()
: CQNewMainWindow
- addDefaultReports()
: CCopasiDataModel
- addDefaultTasks()
: CCopasiDataModel
- addDependency()
: CCellDesignerImporter
- addDependent()
: CDependencyGraph
, CDependencyGraphNode
, CMathDependencyNode
- addDeprecatedURL()
: CMIRIAMResource
- addDirectDependency()
: CCopasiObject
- addEdge()
: CRDFNode
- addElement()
: CChemEq
, CLPolygon
- addElementReference()
: CArrayAnnotation
- addEvent()
: CModelExpansion::SetOfModelElements
- addEvents()
: CModelAdd
- addExperiment()
: CExperimentSet
, CFitItem
- addFile()
: CRecentFiles
- addFix()
: CKeyFactory
, CKeyFactory::HashTable
, CXMLElementHandler< CType, CCommon >
- addGeneralGlyph()
: CLayout
- addGlobalQuantity()
: CModelExpansion::SetOfModelElements
- addGlobalRenderInfoItemsToList()
: CQNewMainWindow
- addGlobalRenderInformation()
: CListOfLayouts
, test000097
- addGlyph()
: CQLayoutScene
- addGradientDefinition()
: CLRenderInformationBase
- addGradientStop()
: CLGradientBase
- addGroup()
: CCopasiParameterGroup
- addHisto1D()
: CQPlotSubwidget
- addHisto1DTab()
: CQPlotSubwidget
- addHistoSlot()
: CQPlotSubwidget
- addInterface()
: COutputHandler
- addItem()
: CProcessReport
, CProgressBar
- addItemInAnimation()
: CQLayoutMainWindow
- AdditionalGOElement()
: CCopasiXMLParser::AdditionalGOElement
- addKey()
: CLLocalStyle
- addLayout()
: CListOfLayouts
- addLine()
: CTableauMatrix
- addLineEnding()
: CLRenderInformationBase
- addLocalRenderInformation()
: CLayout
, test000097
- addMatrixReference()
: CCopasiContainer
- addMeasurement()
: CMiaseTask
- addMetab()
: CModelExpansion::SetOfModelElements
- addMetabolite()
: CChemEq
, CCompartment
- addMetaboliteForAnimation()
: CQGLNetworkPainter
- addMetaboliteGlyph()
: CLayout
- addMetabolites()
: CModelAdd
- addMetabolitesExpressions()
: CModelAdd
- addMetabReferenceGlyph()
: CLReactionGlyph
- addMIRIAMResource()
: CMIRIAMResources
- addMode()
: CBitPatternMethod
, CBitPatternTreeMethod
- addModel()
: CMiaseSed
- addModelValues()
: CModelAdd
- addModelValuesExpressions()
: CModelAdd
- addModifier()
: CChemEqInterface
, CReaction
- addNameSpace()
: CRDFGraph
- addNode()
: CDependencyGraph
- addNotes()
: CMiaseBase
- addObject()
: CMathDependencyGraph
, CModelExpansion::SetOfModelElements
- addObjectReference()
: CCopasiContainer
- addOptItem()
: COptProblem
- addOutput()
: CMiaseSed
- addParameter()
: CCopasiParameterGroup
- addParameterMapping()
: CReaction
- addPlot()
: CQPlotSubwidget
- addPlot2D()
: CMiaseOutput
- addPlotItem()
: CQPlotSubwidget
- addPositionVariables()
: CCopasiSpringLayout
- addPrerequisite()
: CMathDependencyNode
- addProduct()
: CReaction
- addReaction()
: CModelExpansion::SetOfModelElements
- addReactionGlyph()
: CLayout
- addReactions()
: CModelAdd
- addReactionVariables()
: CCopasiSpringLayout
- addReferenceGlyph()
: CLGeneralGlyph
- addReport()
: CCopasiDataModel
- addRole()
: CLStyle
- addSBMLAttributes()
: CLGradientBase
, CLGraphicalPrimitive1D
, CLGraphicalPrimitive2D
, CLRenderInformationBase
, CLRenderPoint
, CLStyle
, CLTransformation2D
- addScanItem()
: CScanProblem
- addSibling()
: CCopasiNode< _Data >
- addSimulation()
: CMiaseSed
- addSlider()
: SliderDialog
- addSpecies()
: CModelParameterCompartment
- addStyle()
: CLGlobalRenderInformation
, CLLocalRenderInformation
- addSubglyph()
: CLGeneralGlyph
- addSubstrate()
: CReaction
- addTableElement()
: CReportDefinition
- addTask()
: CCopasiDataModel
, CMiaseSed
- addTextGlyph()
: CLayout
- addToHistory()
: CQTaskMethodWidget
- addToMainWindow()
: CWindowInterface
- addToMultiplicity()
: CChemEqElement
- addToSelection()
: CLLayoutRenderer
- addTriplet()
: CRDFGraph
- addTripletToGraph()
: CRDFNode
- addType()
: CLStyle
- addUnsupportedAnnotation()
: CAnnotation
- addVariable()
: CFunction
- addVariables()
: CSensProblem
- addVectorReference()
: CCopasiContainer
- addWidget()
: CScanContainerWidget
- addWindow()
: CopasiUI3Window
- adjust_value()
: CLGradientStops
- adjustForEmptyLines()
: CExperimentFileInfo
- adjustTable()
: TaskWidget
- allocate()
: CMathContainer
, CMathEventN
, CMathEventN::CTrigger
, CTimeSeries
- allocateDiscontinuous()
: CMathEventN::CTrigger
- allPositive()
: CSteadyStateMethod
- analyse_render_information()
: CLLayoutRenderer
- angle()
: CCellDesignerImporter
- append()
: CReport
- appendDependentCompartments()
: CModel
- appendDependentEvents()
: CModel
- appendDependentFunctions()
: CFunctionDB
- appendDependentMetabolites()
: CModel
- appendDependentModelObjects()
: CModel
- appendDependentModelValues()
: CModel
- appendDependentReactions()
: CModel
- appendDependentTasks()
: CCopasiDataModel
- appendElementReferences()
: CArrayAnnotation
- applyActiveParameterSet()
: CModel
- applyColumnPivot()
: CLinkMatrix
- applyDefaults()
: CCopasiSpringLayout::Parameters
- applyDelayRefreshes()
: CMathEvent
- applyDependentRefreshes()
: CMathEvent
- applyExponent()
: CSBMLunit
- applyInitialValues()
: CMathContainer
, CMathModel
, CMathTrigger
, CMathTrigger::CRootFinder
, CModel
- applyInverseExponent()
: CSBMLunit
- applyPivot()
: CMatrix< CType >
, CVectorCore< CType >
- applyRowPivot()
: CLinkMatrix
- applyStoichiometricExpressions()
: SBMLImporter
- applyStyle()
: CQRenderConverter
- applyTo()
: CLayoutState
- applyToScene()
: CQCopasiAnimation
, CQEffectDescription
- applyUpdateSequence()
: CMathContainer
- applyValueRefreshes()
: CMathEvent
- arccot()
: CEvaluationNodeFunction
- arccsc()
: CEvaluationNodeFunction
- arcsec()
: CEvaluationNodeFunction
- areApproximatelyEqual()
: SBMLImporter
, SEDMLImporter
- areEqual()
: CNormalBase
- areEqualFunctions()
: SBMLImporter
- areEqualSubtrees()
: SBMLImporter
- areOfSameType()
: CQPlotSubwidget
- areRulesUnique()
: SBMLImporter
- areSBMLUnitDefinitionsIdentical()
: SBMLImporter
- Arguments()
: Arguments
- array()
: CArrayAnnotation
, CMatrix< CType >
, CVectorCore< CType >
- ArrayOf_USCORExsd_USCOREstring()
: ArrayOf_USCORExsd_USCOREstring
- asech()
: CEvaluationNodeFunction
- assembleSubTreeForMassAction()
: CODEExporter
- assertGroup()
: CCopasiParameterGroup
- assertParameter()
: CCopasiParameterGroup
- assignGroupContent()
: CModelParameterGroup
- assignmentData()
: CQParameterOverviewDM
- AssignmentElement()
: CCopasiXMLParser::AssignmentElement
- assignSBMLIdsToReactions()
: CSBMLExporter
- assignSetContent()
: CModelParameterSet
- assistantBtnClicked()
: TaskWidget
- attachKey()
: ObjectBrowserItem
- attachNode()
: CCopasiTree< _Node >
- autoexcept()
: copasi::autoexcept
- autoSave()
: CCopasiDataModel
, CopasiUI3Window
- autoscale()
: ValueScale
- autoUpdateMIRIAMResources()
: CMIRIAMResources
- averageDivergence()
: CLyapTask
- CAbstractLayoutInterface()
: CAbstractLayoutInterface
- CAction()
: CProcessQueue::CAction
- CalculateKernel()
: CBitPatternMethod
, CBitPatternTreeMethod
- CalculateLNA()
: CLNAMethod
- CalculateMCA()
: CMCAMethod
- CAllocation()
: CMath::CAllocationStack::CAllocation
- CAllocationStack()
: CMath::CAllocationStack
- CallParameterElement()
: CCopasiXMLParser::CallParameterElement
- CAnnotation()
: CAnnotation
- CArrayAnnotation()
: CArrayAnnotation
- CArrayElementReference()
: CArrayElementReference
- CArrow()
: CArrow
- CAssignment()
: CMathEvent::CAssignment
, CMathEventN::CAssignment
- CCopasiArray()
: CCopasiArray