test000046 Class Reference

#include <test000046.h>

Inheritance diagram for test000046:

Collaboration diagram for test000046:

Public Member Functions
void	setUp ()
void	tearDown ()
void	test_stoichiometricExpression ()

Static Protected Attributes
static const char *	MODEL_STRING
static CCopasiDataModel *	pCOPASIDATAMODEL = NULL

Private Member Functions
	CPPUNIT_TEST (test_stoichiometricExpression)
	CPPUNIT_TEST_SUITE (test000046)
	CPPUNIT_TEST_SUITE_END ()

Detailed Description

Definition at line 24 of file test000046.h.

Member Function Documentation

test000046::CPPUNIT_TEST ( test_stoichiometricExpression  )

private

test000046::CPPUNIT_TEST_SUITE ( test000046  )

private

test000046::CPPUNIT_TEST_SUITE_END ( )

private

void test000046::setUp

(

)

Definition at line 28 of file test000046.cpp.

References CCopasiRootContainer::addDatamodel(), CCopasiRootContainer::init(), and pCOPASIDATAMODEL.

{
  // Create the root container.
  CCopasiRootContainer::init(0, NULL, false);
  // Create the global data model.
  pCOPASIDATAMODEL = CCopasiRootContainer::addDatamodel();
}

void test000046::tearDown

(

)

Definition at line 36 of file test000046.cpp.

References CCopasiRootContainer::destroy().

{
  CCopasiRootContainer::destroy();
}

void test000046::test_stoichiometricExpression

(

)

Definition at line 41 of file test000046.cpp.

References CModelEntity::FIXED, CChemEq::getCompartmentNumber(), CCopasiMessage::getLastMessage(), CCopasiDataModel::getModel(), CChemEq::getModifiers(), CChemEq::getProducts(), CChemEq::getSubstrates(), CCopasiDataModel::importSBMLFromString(), CModel::ml, CModel::mMol, MODEL_STRING, pCOPASIDATAMODEL, CModelEntity::REACTIONS, CModel::s, CCopasiVector< T >::size(), and CCopasiMessage::WARNING.

{
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;
  CPPUNIT_ASSERT(pDataModel->importSBMLFromString(MODEL_STRING));
  CModel* pModel = pDataModel->getModel();
  CPPUNIT_ASSERT(pModel != NULL);
  CPPUNIT_ASSERT(pModel->getQuantityUnitEnum() == CModel::mMol);
  CPPUNIT_ASSERT(pModel->getVolumeUnitEnum() == CModel::ml);
  CPPUNIT_ASSERT(pModel->getTimeUnitEnum() == CModel::s);
  CPPUNIT_ASSERT(pModel->getCompartments().size() == 1);
  const CCompartment* pCompartment = pModel->getCompartments()[0];
  CPPUNIT_ASSERT(pCompartment != NULL);
  CPPUNIT_ASSERT(pCompartment->getStatus() == CModelEntity::FIXED);
  CPPUNIT_ASSERT(pModel->getMetabolites().size() == 2);
  CMetab* pA = pModel->getMetabolites()[0];
  CPPUNIT_ASSERT(pA != NULL);
  CPPUNIT_ASSERT(pA->getStatus() == CModelEntity::REACTIONS);
  const CMetab* pB = pModel->getMetabolites()[1];
  CPPUNIT_ASSERT(pB != NULL);
  CPPUNIT_ASSERT(pB->getStatus() == CModelEntity::REACTIONS);
  CPPUNIT_ASSERT(pModel->getModelValues().size() == 1);
  const CModelValue* pModelValue = pModel->getModelValues()[0];
  CPPUNIT_ASSERT(pModelValue != NULL);
  CPPUNIT_ASSERT(pModelValue->getStatus() == CModelEntity::FIXED);
  CPPUNIT_ASSERT(fabs((pModelValue->getInitialValue() - 3.7) / 3.7) < 1e-3);

  CPPUNIT_ASSERT(pModel->getReactions().size() == 1);
  const CReaction* pReaction1 = pModel->getReactions()[0];
  CPPUNIT_ASSERT(pReaction1 != NULL);
  CPPUNIT_ASSERT(pReaction1->isReversible() == true);
  // check the kinetic law
  const CFunction* pKineticFunction = pReaction1->getFunction();
  CPPUNIT_ASSERT(pKineticFunction != NULL);
  const CMassAction* pMassAction = dynamic_cast<const CMassAction*>(pKineticFunction);
  CPPUNIT_ASSERT(pMassAction != NULL);
  const CChemEq* pChemEq = &pReaction1->getChemEq();
  CPPUNIT_ASSERT(pChemEq != NULL);
  CPPUNIT_ASSERT(pChemEq->getCompartmentNumber() == 1);
  CPPUNIT_ASSERT(pChemEq->getSubstrates().size() == 1);
  const CChemEqElement* pElement = pChemEq->getSubstrates()[0];
  CPPUNIT_ASSERT(pElement != NULL);
  CPPUNIT_ASSERT(fabs((pElement->getMultiplicity() - 1.85) / 1.85) < 1e-3);
  CPPUNIT_ASSERT(pElement->getMetabolite() == pA);
  CPPUNIT_ASSERT(pChemEq->getProducts().size() == 1);
  pElement = pChemEq->getProducts()[0];
  CPPUNIT_ASSERT(pElement != NULL);
  CPPUNIT_ASSERT(fabs((pElement->getMultiplicity() - 3.35) / 3.35) / 3.35 < 1e-3);
  CPPUNIT_ASSERT(pElement->getMetabolite() == pB);
  CPPUNIT_ASSERT(pChemEq->getModifiers().size() == 0);
  //CPPUNIT_ASSERT(CCopasiMessage::size() == 5);
  CCopasiMessage message = CCopasiMessage::getLastMessage();
  CPPUNIT_ASSERT(message.getType() == CCopasiMessage::WARNING);
  std::string s = message.getText();
  CPPUNIT_ASSERT(!s.empty());
  CPPUNIT_ASSERT(s.find(std::string("One or more stoichiometric expressions were evaluated and converted to constants values.")) != std::string::npos);
  // the other four messages are libSBML unit warnings I don't care about right
  // now.
}

Member Data Documentation

const char * test000046::MODEL_STRING

staticprotected

Definition at line 31 of file test000046.h.

Referenced by test_stoichiometricExpression().

CCopasiDataModel * test000046::pCOPASIDATAMODEL = NULL

staticprotected

Definition at line 32 of file test000046.h.

Referenced by setUp(), and test_stoichiometricExpression().

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The documentation for this class was generated from the following files:

• test000046.h
• test000046.cpp