QConservedSpeciesAnimation Class Reference

Inheritance diagram for QConservedSpeciesAnimation:

Collaboration diagram for QConservedSpeciesAnimation:

Private Member Functions
virtual void	getScales (std::vector< qreal > &scales, int step)
virtual void	initialize (const CCopasiDataModel &dataModel)

Additional Inherited Members
Public Types inherited from CQCopasiAnimation
enum	ScaleMode { Global, Individual }
Public Member Functions inherited from CQCopasiAnimation
virtual void	applyToScene (CQLayoutScene &scene, int step)
	CQCopasiAnimation ()
std::vector < CQEffectDescription * > &	getEntries ()
virtual int	getNumSteps ()
ScaleMode	getScaleMode () const
virtual void	removeFromScene (CQLayoutScene &scene)
void	setScaleMode (ScaleMode mode)
virtual	~CQCopasiAnimation ()
Protected Attributes inherited from CQCopasiAnimation
std::vector < CQEffectDescription * >	mEntries
ScaleMode	mMode
int	mNumSteps
const CCopasiDataModel *	mpDataModel

Detailed Description

Definition at line 35 of file CQAnimationWindow.cpp.

Member Function Documentation

virtual void QConservedSpeciesAnimation::getScales ( std::vector< qreal > &  scales, int  step  )

inlineprivatevirtual

Reimplemented from CQCopasiAnimation.

Definition at line 55 of file CQAnimationWindow.cpp.

References CMoiety::getEquation(), CCopasiDataModel::getModel(), CModel::getMoieties(), CQCopasiAnimation::mEntries, CQCopasiAnimation::mNumSteps, CQCopasiAnimation::mpDataModel, and CCopasiVector< T >::size().

  {
    if (mpDataModel == NULL) return;

    const CModel& model = *mpDataModel->getModel();
    const CCopasiVector< CMoiety > & moieties = model.getMoieties();
    mNumSteps = moieties.size();

    if (moieties.size() <= (size_t)step) return;

    const CMoiety* moiety = moieties[step];
    const std::vector<std::pair< C_FLOAT64, CMetab * > > &eqn = moiety->getEquation();
    std::map<std::string, double> cnValueMap;
    std::vector<std::pair< C_FLOAT64, CMetab * > >::const_iterator it = eqn.begin();

    while (it != eqn.end())
      {
        cnValueMap[(*it).second->getCN()] = (*it).first;
        ++it;
      }

    for (size_t i = 0; i < mEntries.size(); ++i)
      scales.push_back(cnValueMap[mEntries[i]->getCN()]);
  }

virtual void QConservedSpeciesAnimation::initialize ( const CCopasiDataModel &  dataModel )

inlineprivatevirtual

Implements CQCopasiAnimation.

Definition at line 37 of file CQAnimationWindow.cpp.

References CCopasiVector< T >::begin(), CCopasiVector< T >::end(), CModel::getMetabolites(), CCopasiDataModel::getModel(), CModel::getMoieties(), CQCopasiAnimation::mEntries, CQCopasiAnimation::mNumSteps, CQCopasiAnimation::mpDataModel, and CCopasiVector< T >::size().

  {
    mpDataModel = &dataModel;
    const CModel& model = *dataModel.getModel();
    const CCopasiVector< CMetab > & metabs = model.getMetabolites();
    CCopasiVector< CMetab >::const_iterator it = metabs.begin();

    while (it != metabs.end())
      {
        mEntries.push_back(new CQEffectDescription((*it)->getCN()));
        ++it;
      }

    // initialize number of steps
    const CCopasiVector< CMoiety > & moieties = model.getMoieties();
    mNumSteps = moieties.size();
  }

---

The documentation for this class was generated from the following file:

• CQAnimationWindow.cpp