COPASI API
4.16.103
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#include <stdlib.h>
#include <sstream>
#include <string>
#include <iostream>
#include "copasi.h"
#include "CopasiDataModel/CCopasiDataModel.h"
#include "report/CCopasiRootContainer.h"
#include "utilities/CCopasiMessage.h"
#include "utilities/CCopasiException.h"
#include "utilities/CCopasiTask.h"
#include "utilities/CCopasiProblem.h"
#include "commandline/COptionParser.h"
#include "commandline/COptions.h"
#include "function/CFunctionDB.h"
#include "function/CEvaluationTree.h"
#include "function/CFunction.h"
#include "randomGenerator/CRandom.h"
#include "report/CCopasiTimer.h"
#include "report/CKeyFactory.h"
#include "utilities/CVersion.h"
#include "utilities/CDirEntry.h"
#include "utilities/CSparseMatrix.h"
#include "utilities/CProcessReport.h"
Go to the source code of this file.
Macros | |
#define | COPASI_MAIN |
Functions | |
int | exportSBML () |
int | main (int argc, char *argv[]) |
int | validate () |
void | writeLogo () |
#define COPASI_MAIN |
Definition at line 33 of file CopasiSE.cpp.
int exportSBML | ( | ) |
Definition at line 557 of file CopasiSE.cpp.
References CCopasiMessage::getAllMessageText(), CCopasiRootContainer::getDatamodelList(), COptions::getValue(), copasi::SBMLSchema_L1V1, copasi::SBMLSchema_L1V2, copasi::SBMLSchema_L2V1, copasi::SBMLSchema_L2V2, copasi::SBMLSchema_L2V3, copasi::SBMLSchema_L2V4, and copasi::SBMLSchema_L3V1.
Referenced by main().
int main | ( | int | argc, |
char * | argv[] | ||
) |
Definition at line 61 of file CopasiSE.cpp.
References CCopasiRootContainer::addDatamodel(), copasi::autothrow_help, CDirEntry::baseName(), C_FLOAT64, CFunction::calcValue(), CCopasiMessage::checkForMessage(), COptions::compareValue(), CRandom::createGenerator(), CCopasiRootContainer::destroy(), CCopasiDataModel::exportMathModel(), exportSBML(), CProcessReport::finish(), COutputHandler::finish(), copasi::autoexcept::get_autothrow_id(), copasi::option_error::get_help_comment(), CCopasiMessage::getAllMessageText(), CCopasiRootContainer::getDatamodelList(), CCopasiDataModel::getFileName(), CCopasiRootContainer::getLicenseTxt(), CCopasiException::getMessage(), CCopasiDataModel::getModel(), COptions::getNonOptions(), CCopasiContainer::getObject(), CCopasiObject::getObjectName(), CRandom::getRandomOO(), CCopasiDataModel::getTaskList(), CCopasiMessage::getText(), CEvaluationTree::getType(), COptions::getValue(), CCopasiDataModel::importSBML(), CCopasiRootContainer::init(), CCopasiDataModel::loadModel(), CEvaluationTree::MassAction, MCCopasiTask, CCopasiTask::OUTPUT_SE, copasi::COptionParser::parse(), pdelete, CCopasiTimer::refresh(), CCopasiDataModel::saveModel(), CCallParameters< Type >::size(), CCopasiVector< T >::size(), CCopasiVector< CType >::size(), validate(), and writeLogo().
int validate | ( | ) |
Definition at line 505 of file CopasiSE.cpp.
References CCopasiMessage::checkForMessage(), COptions::compareValue(), COutputHandler::finish(), CCopasiMessage::getAllMessageText(), CCopasiRootContainer::getDatamodelList(), CCopasiDataModel::getFileName(), CCopasiDataModel::getModel(), CCopasiObject::getObjectName(), CCopasiDataModel::getTaskList(), MCCopasiTask, CCopasiTask::OUTPUT_SE, and CCopasiVector< T >::size().
Referenced by main().
void writeLogo | ( | ) |
Definition at line 491 of file CopasiSE.cpp.
References COptions::getValue(), CVersion::getVersion(), and CVersion::VERSION.
Referenced by main().