test000104.cpp

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// Begin CVS Header
//   $Source: /Volumes/Home/Users/shoops/cvs/copasi_dev/copasi/sbml/unittests/test000104.cpp,v $
//   $Revision: 1.1 $
//   $Name:  $
//   $Author: gauges $
//   $Date: 2011/12/24 11:14:48 $
// End CVS Header

// Copyright (C) 2011 by Pedro Mendes, Virginia Tech Intellectual
// Properties, Inc., University of Heidelberg, and The University
// of Manchester.
// All rights reserved.

#include "test000104.h"

#include <string>
#include <iostream>

#include <copasi/report/CCopasiRootContainer.h>
#include <copasi/CopasiDataModel/CCopasiDataModel.h>

#include "sbml/xml/XMLNode.h"
#include "sbml/xml/XMLAttributes.h"
#include "sbml/xml/XMLInputStream.h"

// libsbml will not add units to unit definitions of Level 3 documents
// if not all attributes are explicitely set.
// Prior versions of the exporter did not set the multiplier on all units and therefore
// most units were not exported correctly to Level 3.

void test000104::setUp()
{
  // Create the root container.
  CCopasiRootContainer::init(0, NULL, false);
  pDataModel = CCopasiRootContainer::addDatamodel();
}

void test000104::tearDown()
{
  CCopasiRootContainer::destroy();
}



void test000104::test_bug1744()
{
  try
    {
      bool result = pDataModel->importSBMLFromString(SBML_STRING);
      CPPUNIT_ASSERT(result == true);
    }
  catch (...)
    {
      CPPUNIT_ASSERT_MESSAGE("Importing the model string failed with an exception.", false);
    }

  // the actual test was if the import leads to a crash, the rest is just sugar coating

  // check the error messages
  // since there are 6 unit ids used on the model, but none of these is defined as
  // a unit definiton, we should have at least 6 warnings and one should be MCSBML + 66
  unsigned int i, iMax = CCopasiMessage::size();
  CPPUNIT_ASSERT(iMax >= 6);
  CPPUNIT_ASSERT(CCopasiMessage::checkForMessage(MCSBML + 66) == true);
}

const char* test000104::SBML_STRING = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
                                      "<sbml xmlns=\"http://www.sbml.org/sbml/level3/version1/core\" xmlns:comp=\"http://www.sbml.org/sbml/level3/version1/comp/version1\" level=\"3\" version=\"1\" xmlns:html=\"http://www.w3.org/1999/xhtml\" xmlns:jigcell=\"http://www.sbml.org/2001/ns/jigcell\" xmlns:math=\"http://www.w3.org/1998/Math/MathML\">\n"
                                      "<comp:listOfModelDefinitions>\n"
                                      "</comp:listOfModelDefinitions>\n"
                                      "<model areaUnits=\"area\" extentUnits=\"substance\" id=\"Model_1\" lengthUnits=\"length\" metaid=\"COPASI1\" name=\"RootModel\" substanceUnits=\"substance\" timeUnits=\"time\" volumeUnits=\"volume\">\n"
                                      "  </model>\n"
                                      "</sbml>";