CCopasiSpringLayout Member List

This is the complete list of members for CCopasiSpringLayout, including all inherited members.

addCompartmentVariables(CLCompartmentGlyph *cg)	CCopasiSpringLayout	protected
addPositionVariables(CLGraphicalObject *pGO)	CCopasiSpringLayout	protected
addReactionVariables(CLReactionGlyph *rg)	CCopasiSpringLayout	protected
borderProjection(CLGraphicalObject *go, const CLPoint &p, double d)	CCopasiSpringLayout	protected
bound_distance(const double &x1, const double &y1, const double &x2, const double &y2, const double &max)	CCopasiSpringLayout	inlineprotectedstatic
CAbstractLayoutInterface()	CAbstractLayoutInterface	inline
CCopasiSpringLayout(CLayout *layout, Parameters *ppp=NULL)	CCopasiSpringLayout
createLayout(CDataContainer *parent, const std::set< const CCompartment * > &compartments, const std::set< const CReaction * > &reactions, const std::set< const CMetab * > &metabs, const std::set< const CMetab * > &sideMetabs, Parameters *mParams=NULL)	CCopasiSpringLayout	static
createVariables()	CCopasiSpringLayout
distance(const double &x1, const double &y1, const double &x2, const double &y2)	CCopasiSpringLayout	inlineprotectedstatic
finalizeState()	CCopasiSpringLayout
findCompartmentForReactionNode(CLReactionGlyph &r)	CCopasiSpringLayout
getInitialValues() const	CCopasiSpringLayout	virtual
getMassVector() const	CAbstractLayoutInterface	virtual
getNumVariables() const	CAbstractLayoutInterface
getPotential()	CCopasiSpringLayout	virtual
getUpdateActions() const	CCopasiSpringLayout	virtual
getVariablesDescription() const	CAbstractLayoutInterface
initFromLayout(CLayout *layout, Parameters *ppp)	CCopasiSpringLayout	protected
mCompartmentMap	CCopasiSpringLayout	protected
mFixedRelations	CCopasiSpringLayout	protected
mInitialState	CCopasiSpringLayout	protected
mMassVector	CAbstractLayoutInterface	protected
mpLayout	CCopasiSpringLayout	protected
mpPar	CCopasiSpringLayout	protected
mUpdateActions	CCopasiSpringLayout	protected
mVarDescription	CAbstractLayoutInterface	protected
potEdge(const CLMetabReferenceGlyph &e, const CLReactionGlyph &r) const	CCopasiSpringLayout	protected
potGeneralEdge(const CLReferenceGlyph &e, const CLGeneralGlyph &r) const	CCopasiSpringLayout	protected
potReactionCompartment(const CLReactionGlyph &r, const CLCompartmentGlyph &c) const	CCopasiSpringLayout	protected
potReactionReaction(const CLReactionGlyph &a, const CLReactionGlyph &b) const	CCopasiSpringLayout	protected
potSecondOrderEdge(const CLMetabReferenceGlyph &e1, const CLMetabReferenceGlyph &e2, double &dist) const	CCopasiSpringLayout	protected
potSpeciesCompartment(const CLMetabGlyph &s, const CLCompartmentGlyph &c) const	CCopasiSpringLayout	protected
potSpeciesReaction(const CLMetabGlyph &a, const CLReactionGlyph &b) const	CCopasiSpringLayout	protected
potSpeciesSpecies(const CLMetabGlyph &a, const CLMetabGlyph &b) const	CCopasiSpringLayout	protected
randomize()	CCopasiSpringLayout
setState(const std::vector< double > &vars)	CCopasiSpringLayout	virtual
updateFixedRelations()	CCopasiSpringLayout
~CAbstractLayoutInterface()	CAbstractLayoutInterface	inlinevirtual