COPASI API  4.16.103
CCopasiSpringLayout Member List

This is the complete list of members for CCopasiSpringLayout, including all inherited members.

addCompartmentVariables(CLCompartmentGlyph *cg)CCopasiSpringLayoutprotected
addPositionVariables(CLGraphicalObject *pGO)CCopasiSpringLayoutprotected
addReactionVariables(CLReactionGlyph *rg)CCopasiSpringLayoutprotected
borderProjection(CLGraphicalObject *go, const CLPoint &p, double d)CCopasiSpringLayoutprotected
bound_distance(const double &x1, const double &y1, const double &x2, const double &y2, const double &max)CCopasiSpringLayoutinlineprotectedstatic
CAbstractLayoutInterface()CAbstractLayoutInterfaceinline
CCopasiSpringLayout(CLayout *layout, Parameters *ppp=NULL)CCopasiSpringLayout
createLayout(CCopasiContainer *parent, const std::set< const CCompartment * > &compartments, const std::set< const CReaction * > &reactions, const std::set< const CMetab * > &metabs, const std::set< const CMetab * > &sideMetabs, Parameters *mParams=NULL)CCopasiSpringLayoutstatic
createVariables()CCopasiSpringLayout
distance(const double &x1, const double &y1, const double &x2, const double &y2)CCopasiSpringLayoutinlineprotectedstatic
finalizeState()CCopasiSpringLayout
findCompartmentForReactionNode(CLReactionGlyph &r)CCopasiSpringLayout
getInitialValues() const CCopasiSpringLayoutvirtual
getMassVector() const CAbstractLayoutInterfacevirtual
getNumVariables() const CAbstractLayoutInterface
getPotential()CCopasiSpringLayoutvirtual
getUpdateActions() const CCopasiSpringLayoutvirtual
getVariablesDescription() const CAbstractLayoutInterface
initFromLayout(CLayout *layout, Parameters *ppp)CCopasiSpringLayoutprotected
mCompartmentMapCCopasiSpringLayoutprotected
mFixedRelationsCCopasiSpringLayoutprotected
mInitialStateCCopasiSpringLayoutprotected
mMassVectorCAbstractLayoutInterfaceprotected
mpLayoutCCopasiSpringLayoutprotected
mpParCCopasiSpringLayoutprotected
mUpdateActionsCCopasiSpringLayoutprotected
mVarDescriptionCAbstractLayoutInterfaceprotected
potEdge(const CLMetabReferenceGlyph &e, const CLReactionGlyph &r) const CCopasiSpringLayoutprotected
potGeneralEdge(const CLReferenceGlyph &e, const CLGeneralGlyph &r) const CCopasiSpringLayoutprotected
potReactionCompartment(const CLReactionGlyph &r, const CLCompartmentGlyph &c) const CCopasiSpringLayoutprotected
potReactionReaction(const CLReactionGlyph &a, const CLReactionGlyph &b) const CCopasiSpringLayoutprotected
potSecondOrderEdge(const CLMetabReferenceGlyph &e1, const CLMetabReferenceGlyph &e2, double &dist) const CCopasiSpringLayoutprotected
potSpeciesCompartment(const CLMetabGlyph &s, const CLCompartmentGlyph &c) const CCopasiSpringLayoutprotected
potSpeciesReaction(const CLMetabGlyph &a, const CLReactionGlyph &b) const CCopasiSpringLayoutprotected
potSpeciesSpecies(const CLMetabGlyph &a, const CLMetabGlyph &b) const CCopasiSpringLayoutprotected
randomize()CCopasiSpringLayout
setState(const std::vector< double > &vars)CCopasiSpringLayoutvirtual
~CAbstractLayoutInterface()CAbstractLayoutInterfaceinlinevirtual