test000067 Class Reference

#include <test000067.h>

Inheritance diagram for test000067:

Collaboration diagram for test000067:

Public Member Functions
void	setUp ()
void	tearDown ()
void	test_bug1060 ()

Static Protected Attributes
static const char *	MODEL_STRING1
static CCopasiDataModel *	pCOPASIDATAMODEL = NULL

Private Member Functions
	CPPUNIT_TEST (test_bug1060)
	CPPUNIT_TEST_SUITE (test000067)
	CPPUNIT_TEST_SUITE_END ()

Detailed Description

This test is for Bug 1060.

Definition at line 29 of file test000067.h.

Member Function Documentation

test000067::CPPUNIT_TEST ( test_bug1060  )

private

test000067::CPPUNIT_TEST_SUITE ( test000067  )

private

test000067::CPPUNIT_TEST_SUITE_END ( )

private

void test000067::setUp

(

)

Definition at line 41 of file test000067.cpp.

References CCopasiRootContainer::addDatamodel(), CCopasiRootContainer::init(), and pCOPASIDATAMODEL.

{
  // Create the root container.
  CCopasiRootContainer::init(0, NULL, false);
  // Create the global data model.
  pCOPASIDATAMODEL = CCopasiRootContainer::addDatamodel();
}

void test000067::tearDown

(

)

Definition at line 49 of file test000067.cpp.

References CCopasiRootContainer::destroy().

{
  CCopasiRootContainer::destroy();
}

void test000067::test_bug1060

(

)

Definition at line 54 of file test000067.cpp.

References test000059::checkIfIdsUnique(), CCopasiDataModel::exportSBMLToString(), CFunctionDB::findFunction(), CCopasiDataModel::getCopasi2SBMLMap(), CCopasiDataModel::getCurrentSBMLDocument(), CCopasiRootContainer::getFunctionList(), CCopasiDataModel::getModel(), load_cps_model_from_stream(), MODEL_STRING1, and pCOPASIDATAMODEL.

{
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;
  std::istringstream iss(test000067::MODEL_STRING1);
  CPPUNIT_ASSERT(load_cps_model_from_stream(iss, *pDataModel) == true);
  CPPUNIT_ASSERT(pDataModel->getModel() != NULL);
  const SBMLDocument* pDocument = pDataModel->getCurrentSBMLDocument();
  CPPUNIT_ASSERT(pDocument == NULL);
  CPPUNIT_ASSERT(pDataModel->exportSBMLToString(NULL, 2, 3).empty() == false);
  pDocument = pDataModel->getCurrentSBMLDocument();
  const Model* pSBMLModel = pDocument->getModel();
  CPPUNIT_ASSERT(pSBMLModel != NULL);
  CPPUNIT_ASSERT(pSBMLModel->getNumFunctionDefinitions() == 3);
  CPPUNIT_ASSERT(pSBMLModel->getNumCompartments() == 1);
  CPPUNIT_ASSERT(pSBMLModel->getNumSpecies() == 3);
  CPPUNIT_ASSERT(pSBMLModel->getNumReactions() == 8);
  CPPUNIT_ASSERT(pSBMLModel->getNumRules() == 0);
  CPPUNIT_ASSERT(pSBMLModel->getNumParameters() == 0);
  CPPUNIT_ASSERT(test000059::checkIfIdsUnique(pSBMLModel) == true);
  // check if each reaction call the correct kinetic law
  CFunctionDB* pFunDB = CCopasiRootContainer::getFunctionList();
  CEvaluationTree* pModifiedMM = pFunDB->findFunction("Modified MM");
  CPPUNIT_ASSERT(pModifiedMM != NULL);
  CEvaluationTree* pModifiedCF = pFunDB->findFunction("modified constant flux");
  CPPUNIT_ASSERT(pModifiedCF != NULL);
  CEvaluationTree* pConstantFlux = pFunDB->findFunction("Constant flux (irreversible)");
  CPPUNIT_ASSERT(pConstantFlux != NULL);
  unsigned int i, iMax = pSBMLModel->getListOfReactions()->size();
  const Reaction* pReaction = NULL;
  const ASTNode* pRoot = NULL;
  const std::map<CCopasiObject*, SBase*>& copasi2sbmlmap = pDataModel->getCopasi2SBMLMap();
  std::map<CCopasiObject*, SBase*>::const_iterator mappos;

  for (i = 0; i < iMax; ++i)
    {
      pReaction = pSBMLModel->getReaction(i);
      CPPUNIT_ASSERT(pReaction != NULL);
      CPPUNIT_ASSERT(pReaction->getKineticLaw() != NULL);
      pRoot = pReaction->getKineticLaw()->getMath();
      CPPUNIT_ASSERT(pRoot != NULL);
      CPPUNIT_ASSERT(pRoot->getType() == AST_TIMES);

      if (pRoot->getChild(0)->getType() == AST_NAME && pRoot->getChild(0)->getName() == pSBMLModel->getCompartment(0)->getId())
        {
          pRoot = pRoot->getChild(1);
        }
      else
        {
          pRoot = pRoot->getChild(0);
        }

      if (pReaction->getName() == "y0Prod" || pReaction->getName() == "y1Prod" || pReaction->getName() == "xProdLin")
        {
          // uses modified constant flux
          CPPUNIT_ASSERT(pRoot->getType() == AST_FUNCTION);
          mappos = copasi2sbmlmap.find(pModifiedCF);
          CPPUNIT_ASSERT(mappos != copasi2sbmlmap.end());
          CPPUNIT_ASSERT(mappos->second != NULL);
          CPPUNIT_ASSERT(pRoot->getName() == mappos->second->getId());
        }
      else if (pReaction->getName() == "xDegMM")
        {
          // uses modifed MM
          CPPUNIT_ASSERT(pRoot->getType() == AST_FUNCTION);
          mappos = copasi2sbmlmap.find(pModifiedMM);
          CPPUNIT_ASSERT(mappos != copasi2sbmlmap.end());
          CPPUNIT_ASSERT(mappos->second != NULL);
          CPPUNIT_ASSERT(pRoot->getName() == mappos->second->getId());
        }
      else if (pReaction->getName() == "xProd")
        {
          // constant flux
          CPPUNIT_ASSERT(pRoot->getType() == AST_FUNCTION);
          mappos = copasi2sbmlmap.find(pConstantFlux);
          CPPUNIT_ASSERT(mappos != copasi2sbmlmap.end());
          CPPUNIT_ASSERT(mappos->second != NULL);
          CPPUNIT_ASSERT(pRoot->getName() == mappos->second->getId());
        }
      else
        {
          // must be mass action
          CPPUNIT_ASSERT(pRoot->getType() == AST_TIMES);
        }
    }
}

Member Data Documentation

const char * test000067::MODEL_STRING1

staticprotected

Definition at line 36 of file test000067.h.

Referenced by test_bug1060().

CCopasiDataModel * test000067::pCOPASIDATAMODEL = NULL

staticprotected

Definition at line 37 of file test000067.h.

Referenced by setUp(), and test_bug1060().

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The documentation for this class was generated from the following files:

• test000067.h
• test000067.cpp