test000047 Class Reference

#include <test000047.h>

Inheritance diagram for test000047:

Collaboration diagram for test000047:

Public Member Functions
void	setUp ()
void	tearDown ()
void	test_delay ()

Static Protected Attributes
static const char *	MODEL_STRING
static CCopasiDataModel *	pCOPASIDATAMODEL = NULL

Private Member Functions
	CPPUNIT_TEST (test_delay)
	CPPUNIT_TEST_SUITE (test000047)
	CPPUNIT_TEST_SUITE_END ()

Detailed Description

Definition at line 24 of file test000047.h.

Member Function Documentation

test000047::CPPUNIT_TEST ( test_delay  )

private

test000047::CPPUNIT_TEST_SUITE ( test000047  )

private

test000047::CPPUNIT_TEST_SUITE_END ( )

private

void test000047::setUp

(

)

Definition at line 28 of file test000047.cpp.

References CCopasiRootContainer::addDatamodel(), CCopasiRootContainer::init(), and pCOPASIDATAMODEL.

{
  // Create the root container.
  CCopasiRootContainer::init(0, NULL, false);
  // Create the global data model.
  pCOPASIDATAMODEL = CCopasiRootContainer::addDatamodel();
}

void test000047::tearDown

(

)

Definition at line 36 of file test000047.cpp.

References CCopasiRootContainer::destroy().

{
  CCopasiRootContainer::destroy();
}

void test000047::test_delay

(

)

Definition at line 41 of file test000047.cpp.

References CModelEntity::ASSIGNMENT, CEvaluationNodeNumber::DOUBLE, CModelEntity::FIXED, CCopasiNode< _Data >::getChild(), CCopasiMessage::getLastMessage(), CCopasiDataModel::getModel(), CEvaluationNodeObject::getObjectCN(), CCopasiObject::getObjectName(), CCopasiObject::getObjectParent(), CCopasiNode< _Data >::getSibling(), CCopasiDataModel::importSBMLFromString(), CCopasiObject::isReference(), CModel::ml, CModel::mMol, MODEL_STRING, CCopasiDataModel::ObjectFromName(), pCOPASIDATAMODEL, CModel::s, CEvaluationNode::subType(), and CCopasiMessage::WARNING.

{
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;
  CPPUNIT_ASSERT(pDataModel->importSBMLFromString(MODEL_STRING));
  CModel* pModel = pDataModel->getModel();
  CPPUNIT_ASSERT(pModel != NULL);
  CPPUNIT_ASSERT(pModel->getQuantityUnitEnum() == CModel::mMol);
  CPPUNIT_ASSERT(pModel->getVolumeUnitEnum() == CModel::ml);
  CPPUNIT_ASSERT(pModel->getTimeUnitEnum() == CModel::s);
  CPPUNIT_ASSERT(pModel->getCompartments().size() == 1);
  const CCompartment* pCompartment = pModel->getCompartments()[0];
  CPPUNIT_ASSERT(pCompartment != NULL);
  CPPUNIT_ASSERT(pCompartment->getStatus() == CModelEntity::FIXED);
  CPPUNIT_ASSERT(pModel->getMetabolites().size() == 2);
  const CMetab* pB = pModel->getMetabolites()[1];
  CPPUNIT_ASSERT(pB != NULL);
  CPPUNIT_ASSERT(pB->getStatus() == CModelEntity::FIXED);
  CMetab* pA = pModel->getMetabolites()[0];
  CPPUNIT_ASSERT(pA != NULL);
  CPPUNIT_ASSERT(pA->getStatus() == CModelEntity::ASSIGNMENT);
  const CExpression* pExpr = pA->getExpressionPtr();
  CPPUNIT_ASSERT(pExpr != NULL);
  const CEvaluationNode* pNode = pExpr->getRoot();
  CPPUNIT_ASSERT(pNode != NULL);
  const CEvaluationNodeDelay* pDelayNode = dynamic_cast<const CEvaluationNodeDelay*>(pNode);
  CPPUNIT_ASSERT(pDelayNode != NULL);
  const CEvaluationNodeObject* pObjectNode = dynamic_cast<const CEvaluationNodeObject*>(pDelayNode->getChild());
  CPPUNIT_ASSERT(pObjectNode != NULL);
  CCopasiObjectName objectCN = pObjectNode->getObjectCN();
  CPPUNIT_ASSERT(!objectCN.empty());
  std::vector<CCopasiContainer*> listOfContainers;
  listOfContainers.push_back(pModel);
  const CCopasiObject* pObject = pCOPASIDATAMODEL->ObjectFromName(listOfContainers, objectCN);
  CPPUNIT_ASSERT(pObject != NULL);
  CPPUNIT_ASSERT(pObject->isReference() == true);
  CPPUNIT_ASSERT(pObject->getObjectName() == std::string("Concentration"));
  CPPUNIT_ASSERT(pObject->getObjectParent() == pB);
  const CEvaluationNodeNumber* pNumberNode = dynamic_cast<const CEvaluationNodeNumber*>(pObjectNode->getSibling());
  CPPUNIT_ASSERT(pNumberNode != NULL);
  CPPUNIT_ASSERT(((CEvaluationNodeNumber::SubType)CEvaluationNode::subType(pNumberNode->getType())) == CEvaluationNodeNumber::DOUBLE);
  CPPUNIT_ASSERT(fabs((pNumberNode->getValue() - 0.5) / 0.5) < 1e-3);

  CPPUNIT_ASSERT(pNumberNode->getSibling() == NULL);

  CPPUNIT_ASSERT(pModel->getModelValues().size() == 1);
  const CModelValue* pModelValue = pModel->getModelValues()[0];
  CPPUNIT_ASSERT(pModelValue != NULL);
  CPPUNIT_ASSERT(pModelValue->getStatus() == CModelEntity::FIXED);
  CPPUNIT_ASSERT(pModel->getReactions().size() == 0);
  //CPPUNIT_ASSERT(CCopasiMessage::size() == 2);
  CCopasiMessage message = CCopasiMessage::getLastMessage();
  CPPUNIT_ASSERT(message.getType() == CCopasiMessage::WARNING);
  std::string s = message.getText();
  CPPUNIT_ASSERT(!s.empty());
  CPPUNIT_ASSERT(s.find(std::string("COPASI does not support time delays. Calculations on this model will most likely lead to unusable results.")) != std::string::npos);
  // right now, we don't care about the last message since it is a units
  // warning from libSBML
}

Member Data Documentation

const char * test000047::MODEL_STRING

staticprotected

Definition at line 31 of file test000047.h.

Referenced by test_delay().

CCopasiDataModel * test000047::pCOPASIDATAMODEL = NULL

staticprotected

Definition at line 32 of file test000047.h.

Referenced by setUp(), and test_delay().

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The documentation for this class was generated from the following files:

• test000047.h
• test000047.cpp