COPASI API
4.16.103
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Public Member Functions | |
CReactionDependencies () | |
CReactionDependencies (const CReactionDependencies &src) | |
CReactionDependencies & | operator= (const CReactionDependencies &rhs) |
~CReactionDependencies () | |
Public Attributes | |
std::vector< Refresh * > | mCalculations |
CVector< size_t > | mDependentReactions |
CVector< C_FLOAT64 * > | mMethodSpecies |
CVector< size_t > | mMethodSpeciesIndex |
CVector< C_FLOAT64 * > | mMethodSubstrates |
CVector< C_FLOAT64 * > | mModelSpecies |
CVector< C_FLOAT64 * > | mModelSubstrates |
C_FLOAT64 * | mpParticleFlux |
CVector< C_FLOAT64 > | mSpeciesMultiplier |
CVector< C_FLOAT64 > | mSubstrateMultiplier |
Definition at line 42 of file CTrajAdaptiveSA.h.
CTrajAdaptiveSA::CReactionDependencies::CReactionDependencies | ( | ) |
Default constructor
Definition at line 32 of file CTrajAdaptiveSA.cpp.
CTrajAdaptiveSA::CReactionDependencies::CReactionDependencies | ( | const CReactionDependencies & | src | ) |
Copy constructor
const | CReactionDependencies & src |
Definition at line 45 of file CTrajAdaptiveSA.cpp.
CTrajAdaptiveSA::CReactionDependencies::~CReactionDependencies | ( | ) |
CTrajAdaptiveSA::CReactionDependencies & CTrajAdaptiveSA::CReactionDependencies::operator= | ( | const CReactionDependencies & | rhs | ) |
Assignment operator
const | CReactionDependencies & rhs |
Definition at line 61 of file CTrajAdaptiveSA.cpp.
References mCalculations, mDependentReactions, mMethodSpecies, mMethodSubstrates, mModelSpecies, mModelSubstrates, mpParticleFlux, mSpeciesMultiplier, and mSubstrateMultiplier.
std::vector< Refresh * > CTrajAdaptiveSA::CReactionDependencies::mCalculations |
Vector of refresh methods which need to be executed to update all values required for simulation
Definition at line 93 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::doSingleSSAStep(), and operator=().
CVector< size_t > CTrajAdaptiveSA::CReactionDependencies::mDependentReactions |
A vector of indexes of reaction which propensities have to be recalculated.
Definition at line 98 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::doSingleSSAStep(), and operator=().
Vector of pointers to method internal species values to calculate the new state.
Definition at line 83 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::doSingleSSAStep(), and operator=().
CVector< size_t > CTrajAdaptiveSA::CReactionDependencies::mMethodSpeciesIndex |
Species Index
Definition at line 73 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::doSingleTauLeapStep().
Vector of pointers to method internal species values to calculate the new propensity.
Definition at line 108 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::calculateAmu(), and operator=().
Vector of pointers to model species values to calculate the new state.
Definition at line 88 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::doSingleSSAStep(), and operator=().
Vector of pointers to model species values to calculate the new propensity.
Definition at line 113 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::calculateAmu(), and operator=().
C_FLOAT64* CTrajAdaptiveSA::CReactionDependencies::mpParticleFlux |
A pointer to the particle flux of the reaction.
Definition at line 118 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::calculateAmu(), and operator=().
Vector of multiplier to calculate the new state
Definition at line 78 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::doSingleSSAStep(), CTrajAdaptiveSA::doSingleTauLeapStep(), and operator=().
Vector of multiplier to calculate the new propensity.
Definition at line 103 of file CTrajAdaptiveSA.h.
Referenced by CTrajAdaptiveSA::calculateAmu(), and operator=().